Wall clock time and date at job start Tue Mar 31 2020 21:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99569 * 2 1 4 4 O 1.21289 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00709 * 0.02562 * 3 2 1 6 6 S 1.80996 * 109.47555 * 179.97438 * 5 3 2 7 7 C 1.76193 * 99.99997 * 179.97438 * 6 5 3 8 8 H 1.08007 * 120.00574 * 0.02562 * 7 6 5 9 9 C 1.38803 * 120.00036 * 180.02562 * 7 6 5 10 10 N 1.31629 * 119.99995 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99870 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46926 * 90.00114 * 11 9 7 13 13 H 1.48498 * 109.46770 * 210.00336 * 11 9 7 14 14 H 1.48494 * 109.47053 * 330.00185 * 11 9 7 15 15 C 1.46497 * 119.99924 * 179.97438 * 2 1 3 16 16 C 1.53500 * 114.17431 * 300.00112 * 15 2 1 17 17 N 1.47479 * 87.93598 * 87.81164 * 16 15 2 18 18 C 1.46904 * 111.00098 * 138.70174 * 17 16 15 19 19 C 1.53000 * 109.46748 * 170.00343 * 18 17 16 20 20 C 1.53954 * 113.57852 * 272.71913 * 19 18 17 21 21 C 1.52914 * 86.77860 * 220.66549 * 20 19 18 22 22 C 1.52910 * 121.13241 * 150.62315 * 21 20 19 23 23 C 1.53947 * 86.78382 * 100.81841 * 22 21 20 24 24 C 1.52905 * 121.13770 * 259.17478 * 21 20 19 25 25 C 1.52904 * 88.04490 * 24.90311 * 21 20 19 26 26 C 1.47483 * 87.83223 * 27.01368 * 17 16 15 27 27 H 1.09002 * 109.47399 * 269.99764 * 1 2 3 28 28 H 1.08996 * 109.47428 * 29.99877 * 1 2 3 29 29 H 1.09002 * 109.47224 * 150.00215 * 1 2 3 30 30 H 1.09005 * 109.46855 * 300.00527 * 5 3 2 31 31 H 1.09005 * 109.46980 * 59.99417 * 5 3 2 32 32 H 0.96998 * 120.00008 * 179.97438 * 10 9 7 33 33 H 1.09003 * 113.25366 * 167.04673 * 15 2 1 34 34 H 1.09002 * 113.47626 * 333.04418 * 16 15 2 35 35 H 1.09000 * 113.53454 * 202.58653 * 16 15 2 36 36 H 1.08995 * 109.46783 * 50.00634 * 18 17 16 37 37 H 1.08997 * 109.46785 * 290.00184 * 18 17 16 38 38 H 1.09000 * 112.88176 * 43.86336 * 19 18 17 39 39 H 1.08993 * 113.66420 * 335.13737 * 20 19 18 40 40 H 1.08992 * 113.66083 * 106.19809 * 20 19 18 41 41 H 1.09003 * 113.66021 * 215.29352 * 22 21 20 42 42 H 1.09001 * 113.66716 * 346.34206 * 22 21 20 43 43 H 1.09003 * 113.57959 * 270.12744 * 23 22 21 44 44 H 1.08997 * 113.65032 * 139.34996 * 23 22 21 45 45 H 1.09004 * 113.66112 * 13.66238 * 24 21 20 46 46 H 1.09000 * 113.66196 * 144.70512 * 24 21 20 47 47 H 1.09003 * 113.66244 * 220.62943 * 25 21 20 48 48 H 1.08997 * 113.75201 * 89.58186 * 25 21 20 49 49 H 1.08994 * 113.48007 * 87.75873 * 26 17 16 50 50 H 1.09003 * 113.47492 * 218.22915 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4724 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0010 8 1 0.3760 5.0305 0.0011 9 6 1.9281 6.5081 0.0009 10 7 1.0913 7.5242 0.0012 11 14 3.7706 6.8155 0.0015 12 1 4.2594 6.8966 -1.3984 13 1 4.0590 8.0931 0.7014 14 1 4.4581 5.7012 0.7021 15 6 2.1975 -1.2687 0.0006 16 6 1.9054 -2.1627 1.2137 17 7 0.7752 -2.7310 0.4556 18 6 0.6942 -4.1858 0.6429 19 6 -0.6196 -4.7034 0.0539 20 6 -1.7992 -4.6539 1.0421 21 6 -2.2089 -6.0188 0.4874 22 6 -2.9523 -7.0343 1.3558 23 6 -4.2349 -6.5826 0.6341 24 6 -3.3356 -6.1497 -0.5380 25 6 -0.7487 -6.2371 0.0899 26 6 1.5088 -2.3974 -0.7796 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7583 2.5302 -0.8891 31 1 0.7589 2.5299 0.8908 32 1 1.4314 8.4326 0.0015 33 1 3.2579 -1.1535 -0.2240 34 1 1.5981 -1.6062 2.0992 35 1 2.6949 -2.8845 1.4226 36 1 0.7315 -4.4177 1.7073 37 1 1.5327 -4.6645 0.1371 38 1 -0.8478 -4.2693 -0.9195 39 1 -1.4949 -4.6804 2.0883 40 1 -2.5163 -3.8616 0.8279 41 1 -2.6768 -8.0690 1.1519 42 1 -2.9403 -6.7930 2.4187 43 1 -4.7418 -5.7517 1.1248 44 1 -4.9092 -7.4024 0.3867 45 1 -3.6299 -5.2015 -0.9881 46 1 -3.1679 -6.9356 -1.2743 47 1 -0.6266 -6.7093 -0.8849 48 1 -0.1478 -6.7086 0.8675 49 1 2.1930 -3.1815 -1.1036 50 1 0.8655 -2.0396 -1.5835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499631959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:16 Heat of formation + Delta-G solvation = 50.024433 kcal Electronic energy + Delta-G solvation = -26689.263100 eV Core-core repulsion = 23038.534413 eV Total energy + Delta-G solvation = -3650.728687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19807 -40.50770 -38.67032 -35.76588 -34.51439 -32.42114 -30.68262 -28.82437 -26.99772 -26.30035 -26.15183 -26.08980 -25.61327 -24.97794 -22.77620 -20.88433 -20.41046 -18.62405 -18.30027 -17.69645 -17.02153 -16.40023 -16.03087 -15.79043 -15.66485 -15.50790 -15.07399 -14.91417 -14.76059 -14.24176 -13.61959 -13.45245 -13.26036 -13.17819 -13.05227 -12.78690 -12.66727 -12.48366 -12.41435 -12.17276 -12.00538 -11.82131 -11.79754 -11.34453 -11.25538 -11.23590 -11.06644 -10.99011 -10.81610 -10.57689 -10.48307 -10.38997 -10.02313 -9.83982 -9.49616 -9.11813 -8.98704 -8.53379 -8.46731 -6.90029 -6.27208 -3.98729 2.70311 2.91427 3.18980 3.34408 3.51889 3.59465 3.67127 4.02125 4.06369 4.26629 4.28972 4.34674 4.41994 4.43607 4.45937 4.61254 4.69622 4.77227 5.01090 5.05907 5.07924 5.11591 5.12726 5.14220 5.24144 5.29750 5.31863 5.35701 5.39049 5.40538 5.45153 5.47448 5.53055 5.55401 5.61025 5.63111 5.66874 5.74667 5.78405 5.83702 5.94305 5.98220 6.01769 6.06277 6.11125 6.23617 6.64144 6.73569 7.50828 7.95874 8.43522 8.45271 9.19026 10.81996 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.001891 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.171642 B =14803.296080 C =15584.416334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.534 3.466 4 O -0.520 6.520 5 C -0.119 4.119 6 S -0.144 6.144 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.095 3.905 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.122 3.878 16 C -0.015 4.015 17 N -0.464 5.464 18 C 0.028 3.972 19 C -0.094 4.094 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.013 4.013 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.270 0.730 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 -31.648 0.615 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.331 5.331 3 C 0.322 3.678 4 O -0.395 6.395 5 C -0.269 4.269 6 S 0.082 5.918 7 C -0.668 4.668 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.016 3.984 16 C -0.146 4.146 17 N -0.186 5.186 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.167 4.167 23 C -0.178 4.178 24 C -0.155 4.155 25 C -0.163 4.163 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.059 -31.219 0.738 31.810 hybrid contribution -0.126 -0.123 -0.073 0.190 sum -6.185 -31.342 0.666 31.953 Atomic orbital electron populations 1.21790 0.78733 1.03106 1.02203 1.47389 1.07111 1.04087 1.74531 1.20348 0.87886 0.84562 0.75009 1.90684 1.13773 1.86870 1.48182 1.23299 1.02996 0.94912 1.05697 1.84768 1.12040 0.97569 1.97419 1.22314 0.94893 0.90880 1.58690 0.89375 1.24714 0.98521 0.94878 0.93212 1.69938 1.34772 0.98859 1.48133 0.86732 0.85405 0.79790 0.79911 1.19231 1.19970 1.15930 1.21888 0.97589 0.83294 0.95643 1.24304 0.93333 0.97680 0.99253 1.68978 1.33710 1.11558 1.04350 1.22714 0.97117 0.89304 1.00900 1.22358 0.94314 0.94945 0.99607 1.22641 0.97407 0.94953 0.98730 1.22450 0.93564 0.96922 0.97814 1.22751 0.96225 0.98762 0.98932 1.22810 0.96330 1.01061 0.97574 1.22636 0.95205 1.01606 0.96014 1.22850 0.95930 0.96071 1.01405 1.24364 0.96965 0.97407 0.95564 0.92696 0.91300 0.89992 0.88476 0.88442 0.91967 0.86940 0.89260 0.90613 0.90937 0.93624 0.89213 0.90073 0.91275 0.90251 0.91536 0.90209 0.91677 0.91312 0.90088 0.91616 0.90127 0.90296 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 9.34 59.85 0.56 1.51 16 2 N -0.60 -8.23 3.11 -173.63 -0.54 -8.77 16 3 C 0.53 9.76 7.69 -10.99 -0.08 9.68 16 4 O -0.52 -11.28 15.37 5.55 0.09 -11.20 16 5 C -0.12 -2.34 4.71 36.01 0.17 -2.18 16 6 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.23 16 9 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 10 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 11 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 15 C 0.12 1.40 4.66 -67.72 -0.32 1.09 16 16 C -0.02 -0.15 7.31 -7.56 -0.06 -0.20 16 17 N -0.46 -4.01 4.92 -244.68 -1.20 -5.21 16 18 C 0.03 0.20 4.65 -3.82 -0.02 0.18 16 19 C -0.09 -0.64 3.97 -89.63 -0.36 -0.99 16 20 C -0.10 -0.70 7.39 -26.28 -0.19 -0.90 16 21 C -0.11 -0.68 1.11 -154.71 -0.17 -0.85 16 22 C -0.13 -0.77 7.84 -26.28 -0.21 -0.98 16 23 C -0.14 -0.82 8.08 -25.76 -0.21 -1.03 16 24 C -0.12 -0.72 7.84 -26.29 -0.21 -0.93 16 25 C -0.12 -0.76 7.40 -26.28 -0.19 -0.96 16 26 C -0.01 -0.12 6.73 -7.55 -0.05 -0.17 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 29 H 0.08 0.81 5.70 -51.93 -0.30 0.51 16 30 H 0.10 1.79 7.40 -51.91 -0.38 1.41 16 31 H 0.10 1.82 8.11 -51.91 -0.42 1.40 16 32 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.11 1.45 7.28 -51.93 -0.38 1.07 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.62 7.91 -51.93 -0.41 0.20 16 36 H 0.07 0.52 7.78 -51.93 -0.40 0.12 16 37 H 0.05 0.31 7.30 -51.93 -0.38 -0.07 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 49 H 0.08 0.58 7.42 -51.93 -0.39 0.20 16 50 H 0.09 0.81 7.27 -51.93 -0.38 0.43 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -32.55 403.40 -11.46 -44.01 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.83 Total: -1.77 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.12 Total: -8.76 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.97 Total: -39.84 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.55 -11.46 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499631959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.031 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds