Wall clock time and date at job start Tue Mar 31 2020 21:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99569 * 2 1 4 4 O 1.21289 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00709 * 0.02562 * 3 2 1 6 6 S 1.80996 * 109.47555 * 179.97438 * 5 3 2 7 7 C 1.76193 * 99.99997 * 179.97438 * 6 5 3 8 8 H 1.08007 * 120.00574 * 0.02562 * 7 6 5 9 9 C 1.38803 * 120.00036 * 180.02562 * 7 6 5 10 10 N 1.31629 * 119.99995 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99870 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46926 * 90.00114 * 11 9 7 13 13 H 1.48498 * 109.46770 * 210.00336 * 11 9 7 14 14 H 1.48494 * 109.47053 * 330.00185 * 11 9 7 15 15 C 1.46497 * 119.99924 * 179.97438 * 2 1 3 16 16 C 1.53500 * 114.17431 * 300.00112 * 15 2 1 17 17 N 1.47479 * 87.93598 * 87.81164 * 16 15 2 18 18 C 1.46904 * 111.00098 * 138.70174 * 17 16 15 19 19 C 1.53000 * 109.46748 * 170.00343 * 18 17 16 20 20 C 1.53954 * 113.57852 * 272.71913 * 19 18 17 21 21 C 1.52914 * 86.77860 * 220.66549 * 20 19 18 22 22 C 1.52910 * 121.13241 * 150.62315 * 21 20 19 23 23 C 1.53947 * 86.78382 * 100.81841 * 22 21 20 24 24 C 1.52905 * 121.13770 * 259.17478 * 21 20 19 25 25 C 1.52904 * 88.04490 * 24.90311 * 21 20 19 26 26 C 1.47483 * 87.83223 * 27.01368 * 17 16 15 27 27 H 1.09002 * 109.47399 * 269.99764 * 1 2 3 28 28 H 1.08996 * 109.47428 * 29.99877 * 1 2 3 29 29 H 1.09002 * 109.47224 * 150.00215 * 1 2 3 30 30 H 1.09005 * 109.46855 * 300.00527 * 5 3 2 31 31 H 1.09005 * 109.46980 * 59.99417 * 5 3 2 32 32 H 0.96998 * 120.00008 * 179.97438 * 10 9 7 33 33 H 1.09003 * 113.25366 * 167.04673 * 15 2 1 34 34 H 1.09002 * 113.47626 * 333.04418 * 16 15 2 35 35 H 1.09000 * 113.53454 * 202.58653 * 16 15 2 36 36 H 1.08995 * 109.46783 * 50.00634 * 18 17 16 37 37 H 1.08997 * 109.46785 * 290.00184 * 18 17 16 38 38 H 1.09000 * 112.88176 * 43.86336 * 19 18 17 39 39 H 1.08993 * 113.66420 * 335.13737 * 20 19 18 40 40 H 1.08992 * 113.66083 * 106.19809 * 20 19 18 41 41 H 1.09003 * 113.66021 * 215.29352 * 22 21 20 42 42 H 1.09001 * 113.66716 * 346.34206 * 22 21 20 43 43 H 1.09003 * 113.57959 * 270.12744 * 23 22 21 44 44 H 1.08997 * 113.65032 * 139.34996 * 23 22 21 45 45 H 1.09004 * 113.66112 * 13.66238 * 24 21 20 46 46 H 1.09000 * 113.66196 * 144.70512 * 24 21 20 47 47 H 1.09003 * 113.66244 * 220.62943 * 25 21 20 48 48 H 1.08997 * 113.75201 * 89.58186 * 25 21 20 49 49 H 1.08994 * 113.48007 * 87.75873 * 26 17 16 50 50 H 1.09003 * 113.47492 * 218.22915 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4724 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0010 8 1 0.3760 5.0305 0.0011 9 6 1.9281 6.5081 0.0009 10 7 1.0913 7.5242 0.0012 11 14 3.7706 6.8155 0.0015 12 1 4.2594 6.8966 -1.3984 13 1 4.0590 8.0931 0.7014 14 1 4.4581 5.7012 0.7021 15 6 2.1975 -1.2687 0.0006 16 6 1.9054 -2.1627 1.2137 17 7 0.7752 -2.7310 0.4556 18 6 0.6942 -4.1858 0.6429 19 6 -0.6196 -4.7034 0.0539 20 6 -1.7992 -4.6539 1.0421 21 6 -2.2089 -6.0188 0.4874 22 6 -2.9523 -7.0343 1.3558 23 6 -4.2349 -6.5826 0.6341 24 6 -3.3356 -6.1497 -0.5380 25 6 -0.7487 -6.2371 0.0899 26 6 1.5088 -2.3974 -0.7796 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7583 2.5302 -0.8891 31 1 0.7589 2.5299 0.8908 32 1 1.4314 8.4326 0.0015 33 1 3.2579 -1.1535 -0.2240 34 1 1.5981 -1.6062 2.0992 35 1 2.6949 -2.8845 1.4226 36 1 0.7315 -4.4177 1.7073 37 1 1.5327 -4.6645 0.1371 38 1 -0.8478 -4.2693 -0.9195 39 1 -1.4949 -4.6804 2.0883 40 1 -2.5163 -3.8616 0.8279 41 1 -2.6768 -8.0690 1.1519 42 1 -2.9403 -6.7930 2.4187 43 1 -4.7418 -5.7517 1.1248 44 1 -4.9092 -7.4024 0.3867 45 1 -3.6299 -5.2015 -0.9881 46 1 -3.1679 -6.9356 -1.2743 47 1 -0.6266 -6.7093 -0.8849 48 1 -0.1478 -6.7086 0.8675 49 1 2.1930 -3.1815 -1.1036 50 1 0.8655 -2.0396 -1.5835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499631959.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:15 Heat of formation + Delta-G solvation = 30.927596 kcal Electronic energy + Delta-G solvation = -26690.091201 eV Core-core repulsion = 23038.534413 eV Total energy + Delta-G solvation = -3651.556788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97906 -41.17790 -39.89917 -36.47004 -35.54417 -34.66832 -31.71508 -30.03470 -27.96938 -27.85683 -27.01226 -26.64409 -26.59554 -25.76367 -23.36981 -21.98974 -20.94181 -19.99331 -19.42539 -18.79000 -18.30227 -17.34642 -17.08403 -16.91486 -16.75270 -16.41859 -16.18122 -15.98083 -15.67156 -15.46461 -14.99107 -14.75734 -14.52347 -14.21926 -13.77502 -13.61039 -13.56957 -13.48493 -13.36810 -13.24401 -13.01589 -12.93696 -12.90553 -12.66391 -12.46776 -12.38699 -12.02503 -11.90282 -11.84525 -11.70148 -11.36890 -11.16775 -11.00740 -10.95418 -10.89746 -10.52974 -10.51247 -9.81179 -9.66189 -9.00126 -8.51124 -6.22222 0.97154 1.31653 1.45641 1.48708 1.53933 2.04022 2.25481 2.68678 2.86929 2.94981 3.45630 3.52707 3.56721 3.63198 3.74690 3.80551 3.92976 3.96224 4.01291 4.13052 4.15685 4.27953 4.38201 4.43222 4.46784 4.57945 4.60922 4.62649 4.66455 4.72070 4.82730 4.83846 4.84726 4.87052 4.88907 4.93684 4.97882 5.05796 5.07985 5.13109 5.15594 5.21121 5.37521 5.52354 5.58675 5.61183 5.71169 5.72329 6.05716 6.11720 6.27520 6.93836 7.07171 8.61232 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.001891 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.171642 B =14803.296080 C =15584.416334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.583 5.583 3 C 0.535 3.465 4 O -0.562 6.562 5 C -0.105 4.105 6 S -0.175 6.175 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.046 3.954 10 N -0.916 5.916 11 Si 0.915 3.085 12 H -0.262 1.262 13 H -0.259 1.259 14 H -0.237 1.237 15 C 0.102 3.898 16 C -0.005 4.005 17 N -0.468 5.468 18 C 0.031 3.969 19 C -0.089 4.089 20 C -0.102 4.102 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.118 4.118 25 C -0.118 4.118 26 C 0.002 3.998 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.277 0.723 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -34.054 0.480 34.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.315 5.315 3 C 0.322 3.678 4 O -0.440 6.440 5 C -0.255 4.255 6 S 0.052 5.948 7 C -0.677 4.677 8 H 0.080 0.920 9 C -0.160 4.160 10 N -0.554 5.554 11 Si 0.737 3.263 12 H -0.186 1.186 13 H -0.183 1.183 14 H -0.161 1.161 15 C -0.003 4.003 16 C -0.135 4.135 17 N -0.191 5.191 18 C -0.097 4.097 19 C -0.108 4.108 20 C -0.139 4.139 21 C -0.109 4.109 22 C -0.166 4.166 23 C -0.179 4.179 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.128 4.128 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.903 -33.665 0.605 34.184 hybrid contribution -0.339 0.474 -0.024 0.583 sum -6.243 -33.192 0.582 33.779 Atomic orbital electron populations 1.21957 0.76959 1.04082 1.02919 1.47340 1.08130 1.03665 1.72399 1.20019 0.87242 0.85175 0.75316 1.90667 1.15218 1.87410 1.50719 1.23267 1.01737 0.93555 1.06965 1.84668 1.13737 0.98836 1.97561 1.22451 0.94382 0.92507 1.58313 0.91989 1.25567 1.02801 0.94740 0.92879 1.70015 1.36772 0.99517 1.49094 0.85862 0.80159 0.80076 0.80241 1.18641 1.18282 1.16118 1.22124 0.96917 0.82892 0.98334 1.24223 0.94122 0.97372 0.97831 1.68970 1.33282 1.12808 1.03991 1.22723 0.97600 0.88193 1.01214 1.22291 0.93957 0.95495 0.99056 1.22628 0.97449 0.95120 0.98718 1.22458 0.93927 0.96603 0.97949 1.22763 0.96099 0.98994 0.98748 1.22819 0.96466 1.01153 0.97449 1.22658 0.95211 1.01550 0.96146 1.22818 0.95616 0.95441 1.01754 1.24314 0.96836 0.96339 0.95290 0.92054 0.91250 0.88125 0.87065 0.87315 0.91360 0.88504 0.90514 0.88757 0.90754 0.92575 0.89855 0.90280 0.92301 0.89617 0.91739 0.90612 0.91059 0.91870 0.89484 0.91265 0.89613 0.88299 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.70 9.34 127.77 1.19 2.89 16 2 N -0.58 -15.31 3.11 -821.62 -2.56 -17.86 16 3 C 0.53 19.26 7.69 87.66 0.67 19.93 16 4 O -0.56 -24.40 15.37 -3.06 -0.05 -24.44 16 5 C -0.10 -4.09 4.71 71.24 0.34 -3.75 16 6 S -0.17 -8.96 18.55 -56.49 -1.05 -10.01 16 7 C -0.53 -31.10 10.04 67.96 0.68 -30.42 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 9 C 0.05 2.69 5.50 84.86 0.47 3.16 16 10 N -0.92 -56.03 13.97 21.65 0.30 -55.73 16 11 Si 0.91 45.29 27.74 68.60 1.90 47.19 16 12 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 15 C 0.10 2.20 4.66 45.44 0.21 2.41 16 16 C -0.01 -0.09 7.31 83.57 0.61 0.52 16 17 N -0.47 -6.89 4.92 -928.02 -4.57 -11.46 16 18 C 0.03 0.36 4.65 86.30 0.40 0.76 16 19 C -0.09 -1.02 3.97 -10.15 -0.04 -1.06 16 20 C -0.10 -1.28 7.39 30.89 0.23 -1.05 16 21 C -0.11 -1.20 1.11 -52.31 -0.06 -1.26 16 22 C -0.13 -1.33 7.84 30.88 0.24 -1.09 16 23 C -0.14 -1.48 8.08 31.23 0.25 -1.22 16 24 C -0.12 -1.28 7.84 30.88 0.24 -1.04 16 25 C -0.12 -1.17 7.40 30.89 0.23 -0.94 16 26 C 0.00 0.02 6.73 83.57 0.56 0.59 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.44 6.44 -2.39 -0.02 1.43 16 29 H 0.10 1.73 5.70 -2.39 -0.01 1.72 16 30 H 0.11 4.03 7.40 -2.39 -0.02 4.01 16 31 H 0.11 4.00 8.11 -2.39 -0.02 3.98 16 32 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.10 2.42 7.28 -2.39 -0.02 2.41 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.28 7.91 -2.39 -0.02 1.26 16 36 H 0.07 0.87 7.78 -2.39 -0.02 0.85 16 37 H 0.06 0.56 7.30 -2.39 -0.02 0.54 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.02 7.90 -2.39 -0.02 1.00 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.09 0.78 8.10 -2.39 -0.02 0.76 16 49 H 0.10 1.12 7.42 -2.39 -0.02 1.10 16 50 H 0.09 1.38 7.27 -2.39 -0.02 1.36 16 Total: -1.00 -70.43 403.40 1.08 -69.34 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.86 Total: 14.54 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 6.23 Total: -11.57 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -6.82 Total: -85.05 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -70.43 1.08 -69.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499631959.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.272 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds