Wall clock time and date at job start Tue Mar 31 2020 21:38:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.34766 * 119.99664 * 2 1
4 4 O 1.21284 * 120.00125 * 179.97438 * 3 2 1
5 5 C 1.50704 * 120.00288 * 359.97438 * 3 2 1
6 6 S 1.81001 * 109.47264 * 180.02562 * 5 3 2
7 7 C 1.76198 * 99.99974 * 180.02562 * 6 5 3
8 8 H 1.08005 * 120.00092 * 359.97438 * 7 6 5
9 9 C 1.38798 * 120.00128 * 180.02562 * 7 6 5
10 10 N 1.31627 * 120.00612 * 180.02562 * 9 7 6
11 11 Si 1.86806 * 119.99962 * 359.97438 * 9 7 6
12 12 H 1.48507 * 109.46664 * 90.00183 * 11 9 7
13 13 H 1.48495 * 109.47597 * 210.00468 * 11 9 7
14 14 H 1.48501 * 109.47146 * 330.00716 * 11 9 7
15 15 C 1.46492 * 120.00020 * 179.97438 * 2 1 3
16 16 C 1.53780 * 113.61534 * 60.00148 * 15 2 1
17 17 C 1.53781 * 87.08370 * 220.01513 * 16 15 2
18 18 N 1.46901 * 113.61443 * 139.97760 * 17 16 15
19 19 C 1.46905 * 110.99870 * 156.53183 * 18 17 16
20 20 C 1.50697 * 109.47066 * 180.02562 * 19 18 17
21 21 C 1.29447 * 117.95933 * 94.73486 * 20 19 18
22 22 C 1.50072 * 124.07303 * 180.23418 * 21 20 19
23 23 C 1.53016 * 110.20229 * 343.32333 * 22 21 20
24 24 C 1.53388 * 108.44125 * 49.24488 * 23 22 21
25 25 C 1.50070 * 117.96515 * 274.99898 * 20 19 18
26 26 C 1.53784 * 87.17203 * 25.39189 * 17 16 15
27 27 H 1.09004 * 109.47057 * 270.00119 * 1 2 3
28 28 H 1.08997 * 109.47329 * 30.00093 * 1 2 3
29 29 H 1.09002 * 109.46731 * 150.00583 * 1 2 3
30 30 H 1.08999 * 109.47254 * 300.00070 * 5 3 2
31 31 H 1.08999 * 109.46848 * 60.00283 * 5 3 2
32 32 H 0.96995 * 120.00697 * 179.97438 * 10 9 7
33 33 H 1.08997 * 112.90886 * 191.25011 * 15 2 1
34 34 H 1.08999 * 113.61874 * 105.46930 * 16 15 2
35 35 H 1.09003 * 113.61663 * 334.56443 * 16 15 2
36 36 H 1.09002 * 113.61844 * 270.80342 * 17 16 15
37 37 H 1.00901 * 111.00067 * 280.48359 * 18 17 16
38 38 H 1.09001 * 109.46798 * 300.00327 * 19 18 17
39 39 H 1.08998 * 109.46961 * 60.00043 * 19 18 17
40 40 H 1.07994 * 117.96572 * 0.46819 * 21 20 19
41 41 H 1.09001 * 109.47763 * 222.99922 * 22 21 20
42 42 H 1.09004 * 109.17353 * 103.45367 * 22 21 20
43 43 H 1.09005 * 109.64038 * 289.55961 * 23 22 21
44 44 H 1.09001 * 109.63956 * 168.93284 * 23 22 21
45 45 H 1.08998 * 109.64602 * 172.87844 * 24 23 22
46 46 H 1.08998 * 109.64046 * 52.24897 * 24 23 22
47 47 H 1.08994 * 109.35563 * 283.05875 * 25 20 19
48 48 H 1.09007 * 109.35359 * 42.77880 * 25 20 19
49 49 H 1.08990 * 113.61829 * 89.15728 * 26 17 16
50 50 H 1.09003 * 113.61510 * 220.06500 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1388 1.1672 0.0000
4 8 3.3517 1.1672 0.0005
5 6 1.3853 2.4723 -0.0006
6 16 2.5615 3.8481 -0.0012
7 6 1.4413 5.2082 -0.0010
8 1 0.3760 5.0304 -0.0011
9 6 1.9280 6.5080 -0.0019
10 7 1.0913 7.5242 -0.0013
11 14 3.7706 6.8155 -0.0026
12 1 4.2583 6.8962 -1.4030
13 1 4.0595 8.0933 0.6966
14 1 4.4586 5.7014 0.6978
15 6 2.1975 -1.2687 0.0006
16 6 1.8955 -2.1549 -1.2193
17 6 1.9131 -3.3526 -0.2549
18 7 0.8690 -4.3478 -0.5333
19 6 1.2427 -5.6655 -0.0023
20 6 0.1503 -6.6580 -0.3069
21 6 0.2668 -7.3800 -1.3749
22 6 -0.7395 -8.4042 -1.8113
23 6 -1.6677 -8.7619 -0.6486
24 6 -2.1843 -7.4605 -0.0222
25 6 -1.0078 -6.7436 0.6437
26 6 1.5385 -2.3625 0.8606
27 1 -0.3633 0.0000 1.0277
28 1 -0.3634 0.8899 -0.5138
29 1 -0.3633 -0.8901 -0.5138
30 1 0.7590 2.5298 -0.8908
31 1 0.7584 2.5302 0.8892
32 1 1.4314 8.4325 -0.0016
33 1 3.2625 -1.1437 0.1964
34 1 2.6998 -2.1747 -1.9546
35 1 0.9183 -1.9671 -1.6643
36 1 2.9000 -3.7982 -0.1299
37 1 -0.0222 -4.0494 -0.1659
38 1 2.1720 -5.9944 -0.4675
39 1 1.3810 -5.5966 1.0766
40 1 1.1445 -7.2391 -1.9882
41 1 -0.2215 -9.3017 -2.1494
42 1 -1.3296 -7.9988 -2.6333
43 1 -1.1165 -9.3342 0.0976
44 1 -2.5081 -9.3495 -1.0181
45 1 -2.9440 -7.6898 0.7251
46 1 -2.6096 -6.8240 -0.7981
47 1 -0.7049 -7.2955 1.5333
48 1 -1.3154 -5.7377 0.9298
49 1 0.4637 -2.2314 0.9853
50 1 2.0552 -2.5494 1.8020
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001508096000.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:38:04
Heat of formation + Delta-G solvation = -11.576888 kcal
Electronic energy + Delta-G solvation = -26175.269604 eV
Core-core repulsion = 22521.869683 eV
Total energy + Delta-G solvation = -3653.399921 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.41978 -39.22734 -38.29301 -35.42974 -33.93391 -32.43461 -31.31195 -30.98198
-29.21837 -27.08413 -25.92810 -25.65988 -25.48101 -23.66978 -23.05702 -21.82995
-20.14800 -19.08843 -17.95360 -17.66735 -17.03816 -16.46893 -16.06142 -15.78981
-15.50838 -15.05865 -14.93092 -14.79032 -14.42606 -14.12541 -13.96618 -13.61841
-13.54949 -13.22157 -13.14370 -12.80529 -12.76067 -12.70201 -12.63572 -12.37686
-12.23385 -12.17543 -11.95818 -11.37510 -11.26257 -11.23702 -11.16924 -11.00640
-10.95937 -10.79969 -10.59050 -10.45699 -9.84811 -9.45548 -9.19832 -8.99883
-8.71749 -8.51111 -8.47841 -6.91369 -6.28486 -4.00162 1.84538 2.72238
2.92383 3.20213 3.33755 3.51121 3.59694 3.91364 4.21602 4.27427
4.31986 4.34206 4.44808 4.48247 4.61102 4.69605 4.72934 4.79510
4.84643 4.97159 5.01638 5.09804 5.10597 5.14068 5.16190 5.17552
5.32034 5.36733 5.39593 5.42241 5.46703 5.48262 5.50042 5.52523
5.60998 5.63937 5.75309 5.77063 5.78664 5.87789 5.88640 6.01571
6.03062 6.28505 6.61871 6.66226 6.71301 7.00681 7.47208 7.94475
8.41721 8.44767 9.17803 10.80699
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.034689 B = 0.001680 C = 0.001638
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 806.988320 B =16662.499572 C =17090.422808
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.610 5.610
3 C 0.532 3.468
4 O -0.519 6.519
5 C -0.121 4.121
6 S -0.144 6.144
7 C -0.521 4.521
8 H 0.088 0.912
9 C 0.096 3.904
10 N -0.880 5.880
11 Si 0.857 3.143
12 H -0.267 1.267
13 H -0.274 1.274
14 H -0.235 1.235
15 C 0.126 3.874
16 C -0.138 4.138
17 C 0.069 3.931
18 N -0.670 5.670
19 C 0.091 3.909
20 C -0.127 4.127
21 C -0.133 4.133
22 C -0.092 4.092
23 C -0.121 4.121
24 C -0.120 4.120
25 C -0.082 4.082
26 C -0.178 4.178
27 H 0.055 0.945
28 H 0.077 0.923
29 H 0.070 0.930
30 H 0.097 0.903
31 H 0.096 0.904
32 H 0.271 0.729
33 H 0.119 0.881
34 H 0.073 0.927
35 H 0.089 0.911
36 H 0.099 0.901
37 H 0.342 0.658
38 H 0.075 0.925
39 H 0.035 0.965
40 H 0.104 0.896
41 H 0.069 0.931
42 H 0.073 0.927
43 H 0.063 0.937
44 H 0.063 0.937
45 H 0.064 0.936
46 H 0.065 0.935
47 H 0.070 0.930
48 H 0.068 0.932
49 H 0.088 0.912
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.058 -33.542 0.091 34.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.345 5.345
3 C 0.320 3.680
4 O -0.394 6.394
5 C -0.271 4.271
6 S 0.082 5.918
7 C -0.669 4.669
8 H 0.106 0.894
9 C -0.113 4.113
10 N -0.517 5.517
11 Si 0.681 3.319
12 H -0.192 1.192
13 H -0.199 1.199
14 H -0.159 1.159
15 C 0.022 3.978
16 C -0.178 4.178
17 C -0.041 4.041
18 N -0.300 5.300
19 C -0.038 4.038
20 C -0.128 4.128
21 C -0.153 4.153
22 C -0.128 4.128
23 C -0.158 4.158
24 C -0.157 4.157
25 C -0.119 4.119
26 C -0.218 4.218
27 H 0.073 0.927
28 H 0.096 0.904
29 H 0.089 0.911
30 H 0.115 0.885
31 H 0.114 0.886
32 H 0.080 0.920
33 H 0.137 0.863
34 H 0.092 0.908
35 H 0.107 0.893
36 H 0.117 0.883
37 H 0.161 0.839
38 H 0.094 0.906
39 H 0.053 0.947
40 H 0.122 0.878
41 H 0.088 0.912
42 H 0.092 0.908
43 H 0.081 0.919
44 H 0.082 0.918
45 H 0.082 0.918
46 H 0.084 0.916
47 H 0.088 0.912
48 H 0.086 0.914
49 H 0.107 0.893
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -4.061 -33.463 -0.536 33.713
hybrid contribution -0.977 0.637 0.923 1.487
sum -5.038 -32.827 0.387 33.213
Atomic orbital electron populations
1.21764 0.79719 1.03324 1.01782 1.47737 1.06659 1.05217 1.74851
1.20337 0.87942 0.84685 0.75023 1.90681 1.13758 1.86871 1.48100
1.23320 1.03059 0.95182 1.05565 1.84786 1.12019 0.97552 1.97411
1.22312 0.94870 0.90909 1.58762 0.89410 1.24706 0.98524 0.94861
0.93168 1.69933 1.34794 0.98869 1.48104 0.86737 0.85389 0.79796
0.79944 1.19202 1.19945 1.15940 1.22368 0.97988 0.81316 0.96176
1.23539 1.03060 0.93867 0.97293 1.22849 0.95710 0.90434 0.95141
1.60503 1.05038 1.01573 1.62838 1.21086 0.96724 0.88472 0.97475
1.20710 0.96983 0.97867 0.97193 1.21932 0.99647 0.97123 0.96560
1.20459 0.96385 0.97772 0.98230 1.21603 0.98993 0.97369 0.97869
1.21591 0.97216 0.96806 1.00102 1.20372 0.93430 1.00741 0.97343
1.24197 1.01784 0.96978 0.98863 0.92678 0.90435 0.91136 0.88526
0.88551 0.91951 0.86325 0.90801 0.89251 0.88278 0.83888 0.90648
0.94713 0.87790 0.91201 0.90831 0.91864 0.91792 0.91763 0.91583
0.91163 0.91385 0.89337 0.91026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.78 8.85 59.85 0.53 1.31 16
2 N -0.61 -8.26 3.08 -172.89 -0.53 -8.79 16
3 C 0.53 9.78 7.69 -10.99 -0.08 9.69 16
4 O -0.52 -11.40 15.35 5.55 0.09 -11.32 16
5 C -0.12 -2.38 4.71 36.01 0.17 -2.21 16
6 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16
7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16
8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16
9 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16
10 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16
11 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16
12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
14 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16
15 C 0.13 1.46 4.20 -67.03 -0.28 1.18 16
16 C -0.14 -1.35 7.42 -25.92 -0.19 -1.54 16
17 C 0.07 0.55 4.16 -66.90 -0.28 0.28 16
18 N -0.67 -4.97 6.60 -107.13 -0.71 -5.68 16
19 C 0.09 0.62 5.54 -4.97 -0.03 0.59 16
20 C -0.13 -0.85 5.35 -100.94 -0.54 -1.39 16
21 C -0.13 -0.90 9.37 -35.90 -0.34 -1.24 16
22 C -0.09 -0.51 6.11 -28.18 -0.17 -0.68 16
23 C -0.12 -0.62 6.01 -26.52 -0.16 -0.78 16
24 C -0.12 -0.64 6.01 -26.52 -0.16 -0.80 16
25 C -0.08 -0.47 5.80 -28.18 -0.16 -0.63 16
26 C -0.18 -1.51 7.15 -25.82 -0.18 -1.70 16
27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16
29 H 0.07 0.56 6.34 -51.93 -0.33 0.23 16
30 H 0.10 1.78 7.40 -51.92 -0.38 1.39 16
31 H 0.10 1.78 8.11 -51.92 -0.42 1.36 16
32 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16
33 H 0.12 1.60 7.24 -51.93 -0.38 1.22 16
34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
35 H 0.09 0.87 6.92 -51.93 -0.36 0.52 16
36 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16
37 H 0.34 2.35 8.17 -39.29 -0.32 2.03 16
38 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16
39 H 0.03 0.23 8.11 -51.93 -0.42 -0.19 16
40 H 0.10 0.72 7.74 -52.49 -0.41 0.32 16
41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16
44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16
46 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16
47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
48 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16
49 H 0.09 0.68 6.42 -51.93 -0.33 0.35 16
50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 404.56 15.07 6.10 6.10
Total: -1.00 -33.25 404.56 -11.38 -44.63
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -8.72 Total: -0.63 kcal
Atomic # 6 Polarization: -8.31 SS G_CDS: -1.67 Total: -9.98 kcal
Atomic # 7 Polarization: -39.85 SS G_CDS: -0.47 Total: -40.31 kcal
Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.32 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal
Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.25 -11.38 -44.63 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001508096000.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.055 kcal
(2) G-P(sol) polarization free energy of solvation -33.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds