Wall clock time and date at job start Tue Mar 31 2020 20:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99228 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47449 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47477 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47455 * 54.99462 * 14 13 12 16 16 C 1.53003 * 109.47409 * 175.00232 * 14 13 12 17 17 N 1.46506 * 109.46529 * 294.99813 * 14 13 12 18 18 C 1.36938 * 119.99646 * 155.00128 * 17 14 13 19 19 H 1.08003 * 120.00128 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99770 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47230 * 90.00231 * 22 20 18 24 24 H 1.48502 * 109.47000 * 210.00011 * 22 20 18 25 25 H 1.48504 * 109.47119 * 329.99841 * 22 20 18 26 26 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 27 27 C 1.38326 * 120.03416 * 359.95854 * 26 6 5 28 28 F 1.35098 * 120.05006 * 179.97438 * 27 26 6 29 29 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 30 30 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 32 32 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 33 33 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 35 35 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 36 36 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 37 37 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 38 38 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47355 * 299.99571 * 12 11 9 40 40 H 1.09001 * 109.47445 * 59.99947 * 12 11 9 41 41 H 1.09004 * 109.47392 * 299.99641 * 13 12 11 42 42 H 1.08997 * 109.47345 * 59.99514 * 13 12 11 43 43 H 1.08995 * 109.47015 * 59.99352 * 16 14 13 44 44 H 1.08997 * 109.46824 * 180.02562 * 16 14 13 45 45 H 1.08999 * 109.46791 * 299.99383 * 16 14 13 46 46 H 0.96995 * 120.00223 * 334.99758 * 17 14 13 47 47 H 0.96999 * 120.00154 * 179.97438 * 21 20 18 48 48 H 1.08004 * 119.98065 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 6 4.9000 6.8124 -1.4673 10 8 5.1752 7.3572 -0.4192 11 7 5.2052 7.4081 -2.6370 12 6 5.8699 8.7136 -2.6427 13 6 6.1013 9.1619 -4.0871 14 6 6.7961 10.5250 -4.0930 15 1 7.7112 10.4690 -3.5035 16 6 7.1394 10.9163 -5.5318 17 7 5.9025 11.5310 -3.5134 18 6 6.4232 12.6616 -2.9426 19 1 7.4925 12.8116 -2.9195 20 6 5.5765 13.6151 -2.3939 21 7 4.2734 13.4326 -2.4226 22 14 6.2868 15.1571 -1.6147 23 1 6.4106 16.2200 -2.6443 24 1 5.3871 15.6223 -0.5287 25 1 7.6273 14.8548 -1.0516 26 6 4.0580 2.5196 -0.0058 27 6 3.4334 1.2855 -0.0001 28 9 4.1713 0.1538 0.0047 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 0.2138 2.3201 -0.0063 33 1 1.3344 4.5114 -0.0166 34 1 3.3564 5.7503 0.4934 35 1 4.9431 4.9440 0.4974 36 1 4.8456 4.7399 -1.9719 37 1 3.2588 5.5462 -1.9759 38 1 4.9855 6.9722 -3.4752 39 1 5.2420 9.4433 -2.1316 40 1 6.8282 8.6357 -2.1290 41 1 6.7296 8.4321 -4.5979 42 1 5.1434 9.2397 -4.6013 43 1 6.2243 10.9723 -6.1213 44 1 7.6348 11.8872 -5.5359 45 1 7.8042 10.1678 -5.9630 46 1 4.9422 11.3962 -3.5339 47 1 3.6818 14.0986 -2.0388 48 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567221459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:30 Heat of formation + Delta-G solvation = -101.768659 kcal Electronic energy + Delta-G solvation = -27749.865239 eV Core-core repulsion = 23526.341134 eV Total energy + Delta-G solvation = -4223.524105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.07777 -40.50072 -39.59048 -38.18325 -36.59815 -34.36559 -33.72496 -32.24453 -31.13406 -30.11570 -29.10505 -28.17591 -27.58313 -24.86211 -23.73496 -23.17766 -22.45196 -21.40534 -20.44777 -19.57780 -18.72310 -17.43981 -17.32709 -17.16509 -16.66318 -16.52751 -15.72836 -15.65868 -15.40632 -15.21951 -14.97631 -14.65813 -14.53782 -14.16899 -13.78269 -13.56907 -13.46107 -13.16927 -12.99182 -12.59718 -12.55109 -12.47867 -12.32508 -12.04004 -11.81175 -11.54086 -11.53436 -11.33204 -11.20594 -11.04608 -10.90564 -10.73769 -10.61749 -10.28870 -9.99919 -9.66452 -9.61005 -9.32532 -8.91124 -8.78469 -8.48948 -6.93988 -5.74045 -3.02568 0.73140 0.81532 2.69282 2.79270 3.09180 3.38630 3.45883 3.51347 3.52890 3.83886 4.25645 4.34334 4.52954 4.61990 4.66256 4.73222 4.77892 4.84732 4.93249 4.99125 5.04330 5.12148 5.30768 5.40314 5.40960 5.49890 5.54811 5.57512 5.69020 5.70066 5.78119 5.88833 5.94125 6.07869 6.18384 6.19064 6.24406 6.35661 6.40412 6.49749 6.69396 6.72509 6.83431 6.87215 7.06733 7.66482 7.73174 8.39409 8.44395 9.55799 10.12477 10.47078 11.48616 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.001656 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.195816 B =16899.879191 C =17476.478770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.088 3.912 4 C -0.179 4.179 5 C -0.084 4.084 6 C -0.086 4.086 7 C -0.063 4.063 8 C -0.135 4.135 9 C 0.506 3.494 10 O -0.538 6.538 11 N -0.730 5.730 12 C 0.121 3.879 13 C -0.132 4.132 14 C 0.174 3.826 15 H 0.049 0.951 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.112 4.112 27 C 0.070 3.930 28 F -0.134 7.134 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.396 0.604 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -28.051 0.858 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.102 4.102 6 C -0.087 4.087 7 C -0.101 4.101 8 C -0.175 4.175 9 C 0.292 3.708 10 O -0.415 6.415 11 N -0.381 5.381 12 C -0.002 4.002 13 C -0.171 4.171 14 C 0.063 3.937 15 H 0.067 0.933 16 C -0.223 4.223 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.131 4.131 27 C 0.050 3.950 28 F -0.112 7.112 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.229 0.771 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.472 -27.743 1.712 28.540 hybrid contribution -0.284 0.594 -0.131 0.671 sum -6.756 -27.149 1.582 28.022 Atomic orbital electron populations 1.23123 0.77846 1.04312 1.01591 1.86129 1.21782 1.25861 1.88779 1.19021 0.90839 0.85674 1.00248 1.21152 1.00340 0.91415 1.06856 1.20998 0.94001 0.97439 0.97781 1.19713 0.93340 0.94851 1.00751 1.20311 1.01820 0.92129 0.95829 1.21664 1.02156 0.94906 0.98811 1.20592 0.79185 0.87110 0.83951 1.90746 1.53476 1.65798 1.31455 1.46150 1.61627 1.22152 1.08183 1.21448 0.97844 0.83031 0.97838 1.22053 1.01404 0.98477 0.95132 1.20162 0.93728 0.87046 0.92752 0.93303 1.22423 1.00226 1.00663 0.99025 1.42446 1.05076 1.20039 1.68951 1.19230 0.91931 0.96189 1.29532 0.91204 1.24725 0.95351 0.99001 1.01857 1.69652 1.01413 1.36023 1.51032 0.86214 0.77885 0.83519 0.78725 1.21836 1.21827 1.20769 1.20962 1.01184 0.89656 1.01300 1.16958 0.85924 0.82991 1.09087 1.91502 1.76405 1.49031 1.94283 0.92352 0.87944 0.92369 0.84429 0.84696 0.89547 0.89777 0.88919 0.88784 0.77082 0.89764 0.91920 0.91984 0.91649 0.93539 0.92741 0.94592 0.78311 0.93581 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.84 10.36 -19.58 -0.20 -3.04 16 3 C 0.09 0.82 6.69 -39.17 -0.26 0.56 16 4 C -0.18 -1.31 9.04 -39.45 -0.36 -1.66 16 5 C -0.08 -0.63 9.69 -39.60 -0.38 -1.01 16 6 C -0.09 -0.71 5.13 -104.61 -0.54 -1.25 16 7 C -0.06 -0.58 4.63 -27.88 -0.13 -0.71 16 8 C -0.14 -1.18 5.68 -27.88 -0.16 -1.34 16 9 C 0.51 6.81 7.83 -10.99 -0.09 6.72 16 10 O -0.54 -9.84 15.98 5.55 0.09 -9.76 16 11 N -0.73 -9.20 5.56 -60.30 -0.33 -9.53 16 12 C 0.12 1.96 5.56 -4.04 -0.02 1.94 16 13 C -0.13 -1.97 4.87 -26.73 -0.13 -2.10 16 14 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 17 N -0.72 -17.59 4.57 -53.42 -0.24 -17.83 16 18 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.11 -0.97 9.67 -39.54 -0.38 -1.36 16 27 C 0.07 0.71 7.31 -39.30 -0.29 0.42 16 28 F -0.13 -1.53 17.11 2.25 0.04 -1.49 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.19 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 32 H 0.14 0.67 6.30 -52.48 -0.33 0.34 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.09 0.86 8.04 -51.93 -0.42 0.45 16 35 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.40 3.61 8.47 -40.82 -0.35 3.27 16 39 H 0.08 1.72 7.75 -51.93 -0.40 1.32 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -34.48 406.60 -8.30 -42.78 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.64 Total: 7.82 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.83 Total: -5.22 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.15 Total: -54.82 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.11 Total: -12.80 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.48 -8.30 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567221459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.984 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds