Wall clock time and date at job start Tue Mar 31 2020 20:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99228 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47449 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47477 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47455 * 54.99462 * 14 13 12 16 16 C 1.53003 * 109.47409 * 175.00232 * 14 13 12 17 17 N 1.46506 * 109.46529 * 294.99813 * 14 13 12 18 18 C 1.36938 * 119.99646 * 155.00128 * 17 14 13 19 19 H 1.08003 * 120.00128 * 359.97438 * 18 17 14 20 20 C 1.38815 * 119.99770 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47230 * 90.00231 * 22 20 18 24 24 H 1.48502 * 109.47000 * 210.00011 * 22 20 18 25 25 H 1.48504 * 109.47119 * 329.99841 * 22 20 18 26 26 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 27 27 C 1.38326 * 120.03416 * 359.95854 * 26 6 5 28 28 F 1.35098 * 120.05006 * 179.97438 * 27 26 6 29 29 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 30 30 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 32 32 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 33 33 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 35 35 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 36 36 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 37 37 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 38 38 H 0.97001 * 120.00529 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47355 * 299.99571 * 12 11 9 40 40 H 1.09001 * 109.47445 * 59.99947 * 12 11 9 41 41 H 1.09004 * 109.47392 * 299.99641 * 13 12 11 42 42 H 1.08997 * 109.47345 * 59.99514 * 13 12 11 43 43 H 1.08995 * 109.47015 * 59.99352 * 16 14 13 44 44 H 1.08997 * 109.46824 * 180.02562 * 16 14 13 45 45 H 1.08999 * 109.46791 * 299.99383 * 16 14 13 46 46 H 0.96995 * 120.00223 * 334.99758 * 17 14 13 47 47 H 0.96999 * 120.00154 * 179.97438 * 21 20 18 48 48 H 1.08004 * 119.98065 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 6 4.9000 6.8124 -1.4673 10 8 5.1752 7.3572 -0.4192 11 7 5.2052 7.4081 -2.6370 12 6 5.8699 8.7136 -2.6427 13 6 6.1013 9.1619 -4.0871 14 6 6.7961 10.5250 -4.0930 15 1 7.7112 10.4690 -3.5035 16 6 7.1394 10.9163 -5.5318 17 7 5.9025 11.5310 -3.5134 18 6 6.4232 12.6616 -2.9426 19 1 7.4925 12.8116 -2.9195 20 6 5.5765 13.6151 -2.3939 21 7 4.2734 13.4326 -2.4226 22 14 6.2868 15.1571 -1.6147 23 1 6.4106 16.2200 -2.6443 24 1 5.3871 15.6223 -0.5287 25 1 7.6273 14.8548 -1.0516 26 6 4.0580 2.5196 -0.0058 27 6 3.4334 1.2855 -0.0001 28 9 4.1713 0.1538 0.0047 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 0.2138 2.3201 -0.0063 33 1 1.3344 4.5114 -0.0166 34 1 3.3564 5.7503 0.4934 35 1 4.9431 4.9440 0.4974 36 1 4.8456 4.7399 -1.9719 37 1 3.2588 5.5462 -1.9759 38 1 4.9855 6.9722 -3.4752 39 1 5.2420 9.4433 -2.1316 40 1 6.8282 8.6357 -2.1290 41 1 6.7296 8.4321 -4.5979 42 1 5.1434 9.2397 -4.6013 43 1 6.2243 10.9723 -6.1213 44 1 7.6348 11.8872 -5.5359 45 1 7.8042 10.1678 -5.9630 46 1 4.9422 11.3962 -3.5339 47 1 3.6818 14.0986 -2.0388 48 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567221459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:29 Heat of formation + Delta-G solvation = -124.596075 kcal Electronic energy + Delta-G solvation = -27750.855110 eV Core-core repulsion = 23526.341134 eV Total energy + Delta-G solvation = -4224.513976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.84358 -41.13997 -40.64392 -38.83512 -38.10781 -35.79386 -34.50629 -34.08835 -31.73831 -31.28044 -30.43715 -29.39972 -28.17275 -25.99287 -25.42473 -23.78514 -23.67871 -22.18895 -21.67780 -20.90655 -19.30555 -19.26219 -18.18862 -17.98033 -17.53518 -17.15897 -17.00292 -16.79104 -16.53496 -16.05185 -15.82541 -15.80186 -15.36004 -15.26697 -15.18148 -14.93003 -14.57947 -14.19657 -14.09963 -13.69371 -13.55514 -13.51880 -13.22015 -13.05515 -12.89055 -12.81229 -12.61828 -12.42743 -12.27062 -12.20153 -12.12205 -12.10263 -11.88097 -11.87562 -11.62263 -11.58303 -10.95622 -10.80526 -10.02222 -9.94735 -9.13245 -8.96341 -7.91940 -5.18308 0.11137 0.18527 1.46417 1.47928 1.55791 1.72922 2.19886 2.26705 2.55406 2.57693 3.19943 3.42171 3.61559 3.73674 3.92110 3.94011 4.03489 4.05395 4.18303 4.23840 4.29023 4.35059 4.38941 4.39054 4.42045 4.52429 4.68753 4.72114 4.73134 4.80428 4.86389 4.91203 4.92915 5.05151 5.09184 5.13099 5.17630 5.22256 5.27174 5.41779 5.53606 5.54899 5.55507 5.63224 5.65692 6.28468 6.31359 6.66487 7.37186 7.37868 8.15640 8.36915 9.31550 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.001656 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.195816 B =16899.879191 C =17476.478770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.080 3.920 4 C -0.174 4.174 5 C -0.080 4.080 6 C -0.088 4.088 7 C -0.059 4.059 8 C -0.122 4.122 9 C 0.501 3.499 10 O -0.594 6.594 11 N -0.716 5.716 12 C 0.132 3.868 13 C -0.115 4.115 14 C 0.162 3.838 15 H 0.041 0.959 16 C -0.153 4.153 17 N -0.734 5.734 18 C -0.233 4.233 19 H 0.073 0.927 20 C -0.078 4.078 21 N -0.969 5.969 22 Si 0.966 3.034 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.272 1.272 26 C -0.111 4.111 27 C 0.041 3.959 28 F -0.149 7.149 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.417 0.583 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.372 0.628 47 H 0.248 0.752 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 -29.492 -0.594 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.034 3.966 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.088 4.088 7 C -0.096 4.096 8 C -0.162 4.162 9 C 0.289 3.711 10 O -0.475 6.475 11 N -0.369 5.369 12 C 0.008 3.992 13 C -0.153 4.153 14 C 0.054 3.946 15 H 0.059 0.941 16 C -0.213 4.213 17 N -0.375 5.375 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.796 3.204 23 H -0.214 1.214 24 H -0.226 1.226 25 H -0.197 1.197 26 C -0.130 4.130 27 C 0.021 3.979 28 F -0.128 7.128 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.255 0.745 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.204 0.796 47 H 0.057 0.943 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.737 -29.237 0.197 30.004 hybrid contribution -0.185 0.946 0.307 1.012 sum -6.922 -28.291 0.504 29.129 Atomic orbital electron populations 1.23426 0.75715 1.05834 1.02779 1.86102 1.24104 1.26122 1.88751 1.19232 0.90780 0.86474 1.00098 1.21413 1.01554 0.90525 1.05768 1.21258 0.93766 0.98275 0.96538 1.19604 0.93747 0.93971 1.01491 1.20204 1.01123 0.92335 0.95975 1.21673 1.03232 0.92147 0.99115 1.21489 0.78259 0.88313 0.83051 1.90727 1.55739 1.67526 1.33459 1.45961 1.60848 1.20734 1.09311 1.21056 0.96244 0.83747 0.98182 1.21900 1.02151 0.96878 0.94400 1.20478 0.92938 0.87901 0.93311 0.94110 1.22260 1.00807 1.00670 0.97539 1.42636 1.05214 1.20417 1.69224 1.19606 0.92093 0.96841 1.28021 0.90889 1.25482 0.95785 1.02180 1.03602 1.69800 1.02506 1.36879 1.52830 0.85238 0.77321 0.80225 0.77622 1.21365 1.22574 1.19735 1.21046 1.01728 0.89353 1.00885 1.17279 0.86616 0.82971 1.11027 1.91452 1.76840 1.49849 1.94625 0.91011 0.86455 0.91210 0.81854 0.82874 0.90704 0.90976 0.86194 0.86239 0.74544 0.94770 0.93434 0.87742 0.90936 0.93591 0.94970 0.90617 0.79620 0.94284 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.81 10.36 -92.97 -0.96 -6.77 16 3 C 0.08 1.40 6.69 22.53 0.15 1.55 16 4 C -0.17 -2.15 9.04 22.36 0.20 -1.95 16 5 C -0.08 -1.01 9.69 22.26 0.22 -0.79 16 6 C -0.09 -1.31 5.13 -19.85 -0.10 -1.41 16 7 C -0.06 -1.00 4.63 29.85 0.14 -0.87 16 8 C -0.12 -1.84 5.68 29.85 0.17 -1.67 16 9 C 0.50 13.03 7.83 87.66 0.69 13.72 16 10 O -0.59 -22.28 15.98 -3.04 -0.05 -22.33 16 11 N -0.72 -16.89 5.56 -463.07 -2.57 -19.46 16 12 C 0.13 4.25 5.56 86.38 0.48 4.73 16 13 C -0.11 -3.17 4.87 30.59 0.15 -3.02 16 14 C 0.16 5.96 2.89 44.99 0.13 6.09 16 15 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 16 C -0.15 -4.94 9.49 71.98 0.68 -4.25 16 17 N -0.73 -36.10 4.57 -322.92 -1.48 -37.58 16 18 C -0.23 -13.00 9.93 84.03 0.83 -12.17 16 19 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 22 Si 0.97 47.22 29.55 68.60 2.03 49.24 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 26 C -0.11 -1.84 9.67 22.29 0.22 -1.62 16 27 C 0.04 0.81 7.31 22.45 0.16 0.97 16 28 F -0.15 -3.48 17.11 44.97 0.77 -2.71 16 29 H 0.07 0.32 7.65 -2.39 -0.02 0.31 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.34 7.67 -2.39 -0.02 0.32 16 32 H 0.16 1.08 6.30 -2.91 -0.02 1.06 16 33 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.07 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.42 6.24 8.47 -92.71 -0.79 5.46 16 39 H 0.03 1.45 7.75 -2.39 -0.02 1.43 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.37 19.74 7.80 -92.71 -0.72 19.02 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -78.68 406.60 3.18 -75.50 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.53 Total: 27.43 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.70 Total: -3.56 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.77 Total: -116.80 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.01 Total: -29.10 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.77 Total: -2.71 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -78.68 3.18 -75.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567221459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.100 kcal (2) G-P(sol) polarization free energy of solvation -78.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds