Wall clock time and date at job start Tue Mar 31 2020 20:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 C 1.53002 * 109.47415 * 239.99931 * 2 1 3 5 5 C 1.53001 * 109.47280 * 174.99677 * 4 2 1 6 6 N 1.46500 * 109.47078 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00022 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99941 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00093 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.46959 * 304.99611 * 9 7 6 11 11 C 1.52997 * 109.47078 * 64.99522 * 9 7 6 12 12 O 1.42898 * 109.46964 * 184.99640 * 9 7 6 13 13 C 1.42902 * 113.99874 * 150.00106 * 12 9 7 14 14 C 1.50698 * 109.47243 * 180.02562 * 13 12 9 15 15 C 1.38248 * 119.97308 * 269.72565 * 14 13 12 16 16 C 1.38195 * 120.02407 * 179.72592 * 15 14 13 17 17 C 1.38461 * 119.97475 * 0.56639 * 16 15 14 18 18 F 1.35109 * 120.02433 * 179.68246 * 17 16 15 19 19 C 1.38457 * 119.95007 * 359.70561 * 17 16 15 20 20 C 1.38197 * 119.96975 * 0.02562 * 19 17 16 21 21 N 1.46507 * 109.47235 * 120.00215 * 2 1 3 22 22 C 1.36936 * 119.99663 * 275.00138 * 21 2 1 23 23 H 1.07998 * 120.00133 * 359.97438 * 22 21 2 24 24 C 1.38814 * 119.99645 * 179.97438 * 22 21 2 25 25 N 1.31613 * 120.00231 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99503 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47242 * 90.00112 * 26 24 22 28 28 H 1.48507 * 109.46992 * 209.99925 * 26 24 22 29 29 H 1.48501 * 109.47410 * 329.99828 * 26 24 22 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47624 * 299.99624 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00093 * 1 2 3 33 33 H 1.09008 * 109.46873 * 54.99887 * 4 2 1 34 34 H 1.08997 * 109.47047 * 295.00198 * 4 2 1 35 35 H 1.08999 * 109.46729 * 60.00258 * 5 4 2 36 36 H 1.08996 * 109.47226 * 300.00711 * 5 4 2 37 37 H 0.96999 * 120.00112 * 0.02562 * 6 5 4 38 38 H 1.08996 * 109.47853 * 300.00179 * 11 9 7 39 39 H 1.09002 * 109.47153 * 60.00207 * 11 9 7 40 40 H 1.08998 * 109.47533 * 179.97438 * 11 9 7 41 41 H 1.09002 * 109.47082 * 300.00110 * 13 12 9 42 42 H 1.08997 * 109.47374 * 59.99540 * 13 12 9 43 43 H 1.08005 * 119.98601 * 359.97438 * 15 14 13 44 44 H 1.08003 * 120.01467 * 180.25144 * 16 15 14 45 45 H 1.07998 * 120.01366 * 179.97438 * 19 17 16 46 46 H 1.08004 * 119.98586 * 180.02562 * 20 19 17 47 47 H 0.96997 * 120.00022 * 95.00053 * 21 2 1 48 48 H 0.96998 * 119.99629 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 7 4.0532 -1.3033 -2.5102 7 6 5.3741 -1.3394 -2.7754 8 8 6.1584 -0.8001 -2.0238 9 6 5.8763 -2.0488 -4.0065 10 1 5.5126 -3.0763 -4.0075 11 6 5.3668 -1.3261 -5.2550 12 8 7.3053 -2.0493 -4.0062 13 6 7.8863 -3.1794 -4.6600 14 6 9.3886 -3.0773 -4.5996 15 6 10.0784 -2.4354 -5.6112 16 6 11.4556 -2.3363 -5.5540 17 6 12.1455 -2.8903 -4.4890 18 9 13.4925 -2.7995 -4.4354 19 6 11.4540 -3.5378 -3.4792 20 6 10.0763 -3.6308 -3.5358 21 7 2.0184 -0.6907 1.1962 22 6 2.1491 -0.0075 2.3758 23 1 1.8926 1.0404 2.4242 24 6 2.6113 -0.6621 3.5093 25 7 2.9244 -1.9391 3.4502 26 14 2.7890 0.2697 5.1185 27 1 1.5209 0.1784 5.8860 28 1 3.8933 -0.3236 5.9147 29 1 3.0940 1.6949 4.8343 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7517 -1.7715 -1.2056 35 1 3.9995 -1.0727 -0.4260 36 1 3.8532 0.4370 -1.3572 37 1 3.4258 -1.7343 -3.1115 38 1 4.2768 -1.3256 -5.2553 39 1 5.7305 -0.2986 -5.2540 40 1 5.7304 -1.8389 -6.1455 41 1 7.5642 -4.0932 -4.1606 42 1 7.5648 -3.2018 -5.7012 43 1 9.5405 -2.0079 -6.4444 44 1 11.9941 -1.8312 -6.3424 45 1 11.9911 -3.9706 -2.6483 46 1 9.5366 -4.1355 -2.7481 47 1 2.2491 -1.6318 1.1526 48 1 3.2470 -2.3964 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567238082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:00 Heat of formation + Delta-G solvation = -100.221422 kcal Electronic energy + Delta-G solvation = -28066.184366 eV Core-core repulsion = 23842.727354 eV Total energy + Delta-G solvation = -4223.457012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.19748 -40.05650 -39.41141 -37.67667 -36.48688 -34.37906 -32.75855 -32.16298 -31.49489 -30.95628 -29.14102 -28.02530 -26.33983 -24.62566 -23.66767 -23.41218 -22.32441 -21.83523 -20.54363 -19.64161 -18.04730 -17.55042 -17.25430 -17.11422 -16.79508 -15.97403 -15.88442 -15.65679 -15.26339 -15.11064 -14.67228 -14.53329 -14.11213 -13.90125 -13.77770 -13.56558 -13.48128 -13.30819 -13.02579 -12.65156 -12.55713 -12.50496 -12.45143 -12.04195 -11.89706 -11.54312 -11.41729 -11.35319 -11.06534 -10.90912 -10.73873 -10.61691 -10.28641 -10.16165 -9.96348 -9.62826 -9.45305 -9.42478 -8.99377 -8.91120 -8.80304 -6.93695 -5.73516 -3.02073 0.69681 0.89737 2.73985 2.77845 3.27942 3.46560 3.52144 3.53727 3.84659 3.92465 4.31680 4.41471 4.54568 4.60580 4.62618 4.68046 4.75783 4.84295 4.85933 5.02605 5.19177 5.24634 5.29873 5.39622 5.40030 5.55171 5.57355 5.61508 5.68269 5.76672 5.78866 5.87175 5.88215 6.06698 6.14072 6.17898 6.34364 6.39604 6.47809 6.51843 6.64857 6.69730 6.81725 6.86768 7.06398 7.63299 7.73793 8.37649 8.44952 9.56398 10.12801 10.47304 11.49200 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.002006 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.635476 B =13952.109235 C =15782.890319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.131 4.131 5 C 0.123 3.877 6 N -0.727 5.727 7 C 0.508 3.492 8 O -0.514 6.514 9 C 0.070 3.930 10 H 0.086 0.914 11 C -0.169 4.169 12 O -0.349 6.349 13 C 0.100 3.900 14 C -0.099 4.099 15 C -0.068 4.068 16 C -0.158 4.158 17 C 0.103 3.897 18 F -0.140 7.140 19 C -0.156 4.156 20 C -0.064 4.064 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.353 -5.140 -25.109 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.380 5.380 7 C 0.291 3.709 8 O -0.388 6.388 9 C 0.009 3.991 10 H 0.104 0.896 11 C -0.227 4.227 12 O -0.267 6.267 13 C 0.024 3.976 14 C -0.100 4.100 15 C -0.086 4.086 16 C -0.177 4.177 17 C 0.084 3.916 18 F -0.119 7.119 19 C -0.174 4.174 20 C -0.083 4.083 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.139 -4.455 -24.308 26.712 hybrid contribution -0.082 -0.257 0.601 0.659 sum 10.057 -4.712 -23.707 26.180 Atomic orbital electron populations 1.22423 0.99134 1.00809 0.99958 1.20160 0.91874 0.95618 0.86037 0.93272 1.22057 0.93839 1.01780 0.99347 1.21466 0.94370 0.97193 0.86917 1.46043 1.06693 1.57558 1.27718 1.20262 0.82736 0.81305 0.86563 1.90771 1.55102 1.44159 1.48728 1.21932 0.83048 0.99993 0.94165 0.89599 1.22227 1.01704 1.02289 0.96500 1.88159 1.17138 1.43466 1.77927 1.21400 0.89449 0.89466 0.97293 1.19610 0.94439 1.00245 0.95663 1.20915 0.93040 0.96224 0.98470 1.21127 0.95003 1.02833 0.98759 1.17789 0.77010 1.00216 0.96627 1.91509 1.29485 1.94444 1.96445 1.21179 0.95016 1.02033 0.99220 1.21003 0.93097 0.97289 0.96863 1.42446 1.78092 1.10639 1.05345 1.19220 1.36482 0.93844 0.87319 0.91205 1.24724 1.02155 0.95978 0.98063 1.69649 1.50972 1.08686 1.28818 0.86218 0.77205 0.78902 0.84040 1.21841 1.21811 1.20757 0.93540 0.92730 0.94584 0.91925 0.91605 0.89676 0.91790 0.77164 0.90834 0.90997 0.91366 0.91904 0.92008 0.84824 0.84574 0.84419 0.84576 0.78308 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.12 2.01 5.56 -4.04 -0.02 1.98 16 6 N -0.73 -9.31 5.52 -60.30 -0.33 -9.64 16 7 C 0.51 7.51 7.18 -10.99 -0.08 7.43 16 8 O -0.51 -10.55 16.51 -14.30 -0.24 -10.78 16 9 C 0.07 0.72 3.13 -27.88 -0.09 0.63 16 10 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 11 C -0.17 -1.25 9.48 37.16 0.35 -0.89 16 12 O -0.35 -4.27 9.51 -55.09 -0.52 -4.80 16 13 C 0.10 0.84 5.87 36.00 0.21 1.05 16 14 C -0.10 -0.92 5.51 -104.62 -0.58 -1.49 16 15 C -0.07 -0.56 9.70 -39.59 -0.38 -0.94 16 16 C -0.16 -1.34 10.03 -39.52 -0.40 -1.74 16 17 C 0.10 1.00 7.30 -39.42 -0.29 0.72 16 18 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 19 C -0.16 -1.45 10.03 -39.52 -0.40 -1.85 16 20 C -0.06 -0.60 9.70 -39.60 -0.38 -0.99 16 21 N -0.72 -17.59 4.57 -53.42 -0.24 -17.83 16 22 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 26 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.76 7.75 -51.93 -0.40 1.36 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.39 3.52 8.26 -40.82 -0.34 3.18 16 38 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 41 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 42 H 0.06 0.36 7.81 -51.93 -0.41 -0.04 16 43 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 48 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -35.35 410.14 -9.41 -44.75 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.72 Total: 8.10 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.27 Total: -4.69 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.15 Total: -55.06 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.76 Total: -15.58 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.35 -9.41 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567238082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.467 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds