Wall clock time and date at job start Tue Mar 31 2020 20:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 C 1.53002 * 109.47415 * 239.99931 * 2 1 3 5 5 C 1.53001 * 109.47280 * 174.99677 * 4 2 1 6 6 N 1.46500 * 109.47078 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00022 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99941 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00093 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.46959 * 304.99611 * 9 7 6 11 11 C 1.52997 * 109.47078 * 64.99522 * 9 7 6 12 12 O 1.42898 * 109.46964 * 184.99640 * 9 7 6 13 13 C 1.42902 * 113.99874 * 150.00106 * 12 9 7 14 14 C 1.50698 * 109.47243 * 180.02562 * 13 12 9 15 15 C 1.38248 * 119.97308 * 269.72565 * 14 13 12 16 16 C 1.38195 * 120.02407 * 179.72592 * 15 14 13 17 17 C 1.38461 * 119.97475 * 0.56639 * 16 15 14 18 18 F 1.35109 * 120.02433 * 179.68246 * 17 16 15 19 19 C 1.38457 * 119.95007 * 359.70561 * 17 16 15 20 20 C 1.38197 * 119.96975 * 0.02562 * 19 17 16 21 21 N 1.46507 * 109.47235 * 120.00215 * 2 1 3 22 22 C 1.36936 * 119.99663 * 275.00138 * 21 2 1 23 23 H 1.07998 * 120.00133 * 359.97438 * 22 21 2 24 24 C 1.38814 * 119.99645 * 179.97438 * 22 21 2 25 25 N 1.31613 * 120.00231 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99503 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47242 * 90.00112 * 26 24 22 28 28 H 1.48507 * 109.46992 * 209.99925 * 26 24 22 29 29 H 1.48501 * 109.47410 * 329.99828 * 26 24 22 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47624 * 299.99624 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00093 * 1 2 3 33 33 H 1.09008 * 109.46873 * 54.99887 * 4 2 1 34 34 H 1.08997 * 109.47047 * 295.00198 * 4 2 1 35 35 H 1.08999 * 109.46729 * 60.00258 * 5 4 2 36 36 H 1.08996 * 109.47226 * 300.00711 * 5 4 2 37 37 H 0.96999 * 120.00112 * 0.02562 * 6 5 4 38 38 H 1.08996 * 109.47853 * 300.00179 * 11 9 7 39 39 H 1.09002 * 109.47153 * 60.00207 * 11 9 7 40 40 H 1.08998 * 109.47533 * 179.97438 * 11 9 7 41 41 H 1.09002 * 109.47082 * 300.00110 * 13 12 9 42 42 H 1.08997 * 109.47374 * 59.99540 * 13 12 9 43 43 H 1.08005 * 119.98601 * 359.97438 * 15 14 13 44 44 H 1.08003 * 120.01467 * 180.25144 * 16 15 14 45 45 H 1.07998 * 120.01366 * 179.97438 * 19 17 16 46 46 H 1.08004 * 119.98586 * 180.02562 * 20 19 17 47 47 H 0.96997 * 120.00022 * 95.00053 * 21 2 1 48 48 H 0.96998 * 119.99629 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 7 4.0532 -1.3033 -2.5102 7 6 5.3741 -1.3394 -2.7754 8 8 6.1584 -0.8001 -2.0238 9 6 5.8763 -2.0488 -4.0065 10 1 5.5126 -3.0763 -4.0075 11 6 5.3668 -1.3261 -5.2550 12 8 7.3053 -2.0493 -4.0062 13 6 7.8863 -3.1794 -4.6600 14 6 9.3886 -3.0773 -4.5996 15 6 10.0784 -2.4354 -5.6112 16 6 11.4556 -2.3363 -5.5540 17 6 12.1455 -2.8903 -4.4890 18 9 13.4925 -2.7995 -4.4354 19 6 11.4540 -3.5378 -3.4792 20 6 10.0763 -3.6308 -3.5358 21 7 2.0184 -0.6907 1.1962 22 6 2.1491 -0.0075 2.3758 23 1 1.8926 1.0404 2.4242 24 6 2.6113 -0.6621 3.5093 25 7 2.9244 -1.9391 3.4502 26 14 2.7890 0.2697 5.1185 27 1 1.5209 0.1784 5.8860 28 1 3.8933 -0.3236 5.9147 29 1 3.0940 1.6949 4.8343 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7517 -1.7715 -1.2056 35 1 3.9995 -1.0727 -0.4260 36 1 3.8532 0.4370 -1.3572 37 1 3.4258 -1.7343 -3.1115 38 1 4.2768 -1.3256 -5.2553 39 1 5.7305 -0.2986 -5.2540 40 1 5.7304 -1.8389 -6.1455 41 1 7.5642 -4.0932 -4.1606 42 1 7.5648 -3.2018 -5.7012 43 1 9.5405 -2.0079 -6.4444 44 1 11.9941 -1.8312 -6.3424 45 1 11.9911 -3.9706 -2.6483 46 1 9.5366 -4.1355 -2.7481 47 1 2.2491 -1.6318 1.1526 48 1 3.2470 -2.3964 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567238082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:00 Heat of formation + Delta-G solvation = -123.296239 kcal Electronic energy + Delta-G solvation = -28067.184965 eV Core-core repulsion = 23842.727354 eV Total energy + Delta-G solvation = -4224.457611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96028 -41.05669 -40.19467 -38.60214 -37.96768 -35.84303 -34.22121 -33.30877 -32.14644 -31.81420 -30.79822 -29.41109 -26.99511 -25.97178 -25.26057 -24.07236 -23.56832 -22.50553 -21.80751 -21.02248 -19.29328 -18.75753 -18.38493 -18.06313 -17.51039 -17.03932 -16.76238 -16.65127 -16.47820 -16.31872 -15.89924 -15.56907 -15.34396 -15.27837 -14.87279 -14.59313 -14.48122 -14.20462 -14.10593 -13.98134 -13.55953 -13.37776 -13.27036 -13.23222 -13.08560 -12.81934 -12.63486 -12.57946 -12.28013 -12.23322 -12.12739 -12.06207 -11.99687 -11.61739 -11.57785 -11.01244 -10.93169 -10.46767 -10.10689 -10.09123 -9.70164 -8.96868 -7.92810 -5.18924 -0.00075 0.23822 1.45217 1.47094 1.54753 1.61175 1.88067 2.49047 2.56930 3.11447 3.23485 3.41578 3.66347 3.70442 3.83218 3.93473 3.93722 3.99020 4.03110 4.11561 4.19398 4.25504 4.25672 4.39390 4.46452 4.58915 4.68616 4.76793 4.79416 4.85564 4.91757 4.93102 4.96418 5.04917 5.10477 5.12762 5.20126 5.23610 5.27285 5.42009 5.46176 5.48751 5.54811 5.63911 5.85943 6.09093 6.30777 6.62612 7.30436 7.36710 8.15403 8.36139 9.30830 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.002006 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.635476 B =13952.109235 C =15782.890319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.133 3.867 6 N -0.707 5.707 7 C 0.499 3.501 8 O -0.584 6.584 9 C 0.076 3.924 10 H 0.121 0.879 11 C -0.163 4.163 12 O -0.386 6.386 13 C 0.097 3.903 14 C -0.111 4.111 15 C -0.068 4.068 16 C -0.160 4.160 17 C 0.082 3.918 18 F -0.149 7.149 19 C -0.166 4.166 20 C -0.080 4.080 21 N -0.735 5.735 22 C -0.232 4.232 23 H 0.073 0.927 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.272 1.272 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.419 0.581 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.372 0.628 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -5.029 -28.270 29.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.361 5.361 7 C 0.285 3.715 8 O -0.463 6.463 9 C 0.015 3.985 10 H 0.138 0.862 11 C -0.220 4.220 12 O -0.305 6.305 13 C 0.022 3.978 14 C -0.112 4.112 15 C -0.086 4.086 16 C -0.178 4.178 17 C 0.063 3.937 18 F -0.127 7.127 19 C -0.185 4.185 20 C -0.098 4.098 21 N -0.376 5.376 22 C -0.364 4.364 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.197 1.197 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.257 0.743 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.178 0.822 44 H 0.174 0.826 45 H 0.163 0.837 46 H 0.157 0.843 47 H 0.204 0.796 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.316 -4.332 -27.546 29.098 hybrid contribution 0.451 -0.251 1.498 1.584 sum 8.767 -4.584 -26.048 27.863 Atomic orbital electron populations 1.22253 0.96999 1.01100 1.00859 1.20490 0.93244 0.95179 0.85776 0.94148 1.21907 0.92157 1.02228 0.98900 1.21085 0.95499 0.95984 0.86517 1.45792 1.06927 1.56698 1.26716 1.21339 0.82498 0.80319 0.87320 1.90738 1.56848 1.47287 1.51382 1.22043 0.82536 1.01377 0.92533 0.86159 1.22238 1.03056 1.00969 0.95759 1.88115 1.18247 1.45198 1.78943 1.21619 0.88558 0.88678 0.98993 1.19905 0.95367 1.00155 0.95744 1.21241 0.92956 0.95519 0.98900 1.21417 0.95431 1.02290 0.98693 1.18054 0.76835 1.01279 0.97564 1.91481 1.30084 1.94620 1.96564 1.21343 0.95304 1.02262 0.99604 1.21187 0.93249 0.97931 0.97473 1.42647 1.78375 1.10241 1.06286 1.19597 1.34237 0.94063 0.88483 0.90877 1.25478 1.03419 0.96906 1.01323 1.69798 1.53031 1.10136 1.29145 0.85251 0.76836 0.78038 0.80372 1.21261 1.22661 1.19746 0.93521 0.95027 0.90471 0.87348 0.90701 0.94884 0.93427 0.74299 0.88574 0.93019 0.88509 0.90908 0.88685 0.82184 0.82637 0.83723 0.84280 0.79624 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.49 71.98 0.68 -4.15 16 2 C 0.16 5.90 2.89 44.99 0.13 6.03 16 3 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 4 C -0.11 -3.07 4.87 30.60 0.15 -2.92 16 5 C 0.13 4.35 5.56 86.38 0.48 4.83 16 6 N -0.71 -17.04 5.52 -463.07 -2.55 -19.59 16 7 C 0.50 14.52 7.18 87.66 0.63 15.15 16 8 O -0.58 -25.02 16.51 15.96 0.26 -24.76 16 9 C 0.08 1.37 3.13 29.85 0.09 1.46 16 10 H 0.12 1.33 7.79 -2.39 -0.02 1.31 16 11 C -0.16 -1.78 9.48 71.98 0.68 -1.10 16 12 O -0.39 -8.91 9.51 -129.99 -1.24 -10.15 16 13 C 0.10 1.40 5.87 71.24 0.42 1.82 16 14 C -0.11 -1.93 5.51 -19.86 -0.11 -2.04 16 15 C -0.07 -1.00 9.70 22.26 0.22 -0.78 16 16 C -0.16 -2.54 10.03 22.31 0.22 -2.32 16 17 C 0.08 1.61 7.30 22.38 0.16 1.77 16 18 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 19 C -0.17 -3.20 10.03 22.31 0.22 -2.98 16 20 C -0.08 -1.52 9.70 22.26 0.22 -1.31 16 21 N -0.73 -36.21 4.57 -322.93 -1.48 -37.69 16 22 C -0.23 -12.96 9.93 84.03 0.83 -12.13 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 26 Si 0.97 47.68 29.55 68.60 2.03 49.71 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 28 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 29 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.03 1.43 7.75 -2.39 -0.02 1.41 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 5.95 8.26 -92.71 -0.77 5.19 16 38 H 0.10 0.61 7.92 -2.39 -0.02 0.59 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.55 7.87 -2.39 -0.02 0.53 16 41 H 0.07 0.87 8.03 -2.39 -0.02 0.86 16 42 H 0.10 0.71 7.81 -2.39 -0.02 0.69 16 43 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 45 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 47 H 0.37 19.79 7.80 -92.71 -0.72 19.07 16 48 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -82.58 410.14 3.06 -79.52 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.52 Total: 28.58 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.50 Total: -2.85 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -3.75 Total: -117.65 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.97 Total: -34.91 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -82.58 3.06 -79.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567238082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.779 kcal (2) G-P(sol) polarization free energy of solvation -82.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds