Wall clock time and date at job start Tue Mar 31 2020 21:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47467 * 270.00430 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00817 * 3 2 1 6 6 H 1.48507 * 109.47018 * 150.00364 * 3 2 1 7 7 C 1.38812 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00849 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.65185 * 14.63308 * 9 7 2 11 11 C 1.54911 * 104.83140 * 155.90722 * 10 9 7 12 12 C 1.55161 * 101.58005 * 37.01348 * 11 10 9 13 13 C 1.47024 * 125.64675 * 194.67731 * 9 7 2 14 14 H 1.08994 * 109.88477 * 300.59251 * 13 9 7 15 15 C 1.52998 * 109.88155 * 61.60717 * 13 9 7 16 16 C 1.52999 * 109.47224 * 185.23867 * 15 13 9 17 17 C 1.53006 * 109.47419 * 174.94627 * 16 15 13 18 18 N 1.46497 * 109.47217 * 179.97438 * 17 16 15 19 19 C 1.34774 * 119.99818 * 180.02562 * 18 17 16 20 20 O 1.21609 * 120.00312 * 359.97438 * 19 18 17 21 21 C 1.47431 * 120.00149 * 180.02562 * 19 18 17 22 22 C 1.41290 * 126.41149 * 359.97438 * 21 19 18 23 23 N 1.30453 * 108.02131 * 180.02562 * 22 21 19 24 24 N 1.39932 * 108.89678 * 0.02562 * 23 22 21 25 25 C 1.46494 * 125.75230 * 180.02562 * 24 23 22 26 26 C 1.53000 * 109.47487 * 304.97126 * 25 24 23 27 27 F 1.39894 * 109.47789 * 180.02562 * 26 25 24 28 28 C 1.34260 * 108.49173 * 359.97438 * 24 23 22 29 29 H 0.97005 * 119.99728 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36744 * 274.75104 * 10 9 7 31 31 H 1.09005 * 110.36163 * 37.07058 * 10 9 7 32 32 H 1.09000 * 110.99974 * 155.08546 * 11 10 9 33 33 H 1.08998 * 111.00567 * 278.90052 * 11 10 9 34 34 H 1.09003 * 110.71726 * 206.13198 * 12 11 10 35 35 H 1.09002 * 110.71801 * 82.85814 * 12 11 10 36 36 H 1.09001 * 109.47595 * 65.23633 * 15 13 9 37 37 H 1.09003 * 109.47247 * 305.24019 * 15 13 9 38 38 H 1.08997 * 109.46927 * 54.94936 * 16 15 13 39 39 H 1.08996 * 109.47092 * 294.94564 * 16 15 13 40 40 H 1.09003 * 109.47069 * 59.99884 * 17 16 15 41 41 H 1.09001 * 109.47197 * 300.00407 * 17 16 15 42 42 H 0.96997 * 119.99953 * 0.02562 * 18 17 16 43 43 H 1.08000 * 125.99095 * 359.75512 * 22 21 19 44 44 H 1.09001 * 109.47399 * 64.97316 * 25 24 23 45 45 H 1.09004 * 109.47225 * 184.97377 * 25 24 23 46 46 H 1.09001 * 109.46956 * 300.00461 * 26 25 24 47 47 H 1.09004 * 109.46683 * 59.99920 * 26 25 24 48 48 H 1.08000 * 126.28814 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1081 -2.5525 -0.3027 11 6 -0.2479 -4.0214 -0.7745 12 6 0.7642 -4.7442 0.1533 13 6 1.8981 -3.7080 0.3017 14 1 2.7024 -3.9324 -0.3988 15 6 2.4356 -3.7265 1.7340 16 6 3.1445 -5.0569 1.9956 17 6 3.7903 -5.0267 3.3824 18 7 4.4685 -6.3007 3.6331 19 6 5.1115 -6.5036 4.8001 20 8 5.1290 -5.6289 5.6448 21 6 5.7946 -7.7855 5.0522 22 6 5.8606 -8.8882 4.1713 23 7 6.5504 -9.8296 4.7540 24 7 6.9524 -9.3812 6.0171 25 6 7.7463 -10.1440 6.9835 26 6 7.0603 -11.4826 7.2638 27 9 7.8181 -12.2108 8.1871 28 6 6.4887 -8.1337 6.1935 29 1 -0.4850 0.8401 0.0004 30 1 -0.7063 -2.3830 0.5926 31 1 -0.4093 -1.8688 -1.0964 32 1 -1.2605 -4.3897 -0.6103 33 1 0.0382 -4.1244 -1.8212 34 1 1.1340 -5.6561 -0.3157 35 1 0.3123 -4.9627 1.1209 36 1 1.6081 -3.6119 2.4342 37 1 3.1410 -2.9064 1.8680 38 1 3.9142 -5.2131 1.2398 39 1 2.4199 -5.8698 1.9499 40 1 3.0206 -4.8703 4.1383 41 1 4.5148 -4.2136 3.4282 42 1 4.4549 -6.9983 2.9592 43 1 5.4140 -8.9437 3.1895 44 1 8.7408 -10.3240 6.5753 45 1 7.8313 -9.5781 7.9112 46 1 6.0658 -11.3026 7.6721 47 1 6.9753 -12.0485 6.3361 48 1 6.6324 -7.5160 7.0677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567254989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:47 Heat of formation + Delta-G solvation = -0.370533 kcal Electronic energy + Delta-G solvation = -27956.740710 eV Core-core repulsion = 23769.906308 eV Total energy + Delta-G solvation = -4186.834402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.37376 -41.84160 -39.29591 -37.79533 -35.45022 -34.81367 -32.91630 -32.13133 -30.93608 -29.85075 -29.29670 -27.88945 -25.04974 -24.47613 -24.03299 -22.73579 -21.55964 -21.18153 -20.26989 -20.06448 -19.12569 -18.39650 -17.11779 -16.87320 -16.65282 -16.16486 -15.93191 -15.64554 -15.58491 -15.11778 -14.96495 -14.59414 -14.35914 -14.09212 -13.90482 -13.64512 -13.47887 -13.23225 -12.80394 -12.30124 -12.20707 -12.00848 -11.89667 -11.76480 -11.65538 -11.43130 -11.35634 -10.99556 -10.77717 -10.69454 -10.51871 -10.12587 -10.07259 -10.00096 -9.94983 -9.73415 -9.59105 -9.56973 -9.27345 -8.94672 -8.53175 -6.72563 -5.70362 -3.05197 1.09026 1.67181 1.77034 3.17578 3.29761 3.41918 3.47735 3.49228 3.52789 3.86381 4.18320 4.24922 4.30967 4.47194 4.52630 4.62939 4.77385 4.93855 5.05908 5.10131 5.23236 5.28490 5.43966 5.48458 5.64139 5.65909 5.77182 5.89355 5.91679 6.02144 6.09083 6.17061 6.24023 6.31242 6.38814 6.45005 6.47844 6.60769 6.74348 6.76512 7.00433 7.00857 7.21791 7.48552 7.59102 7.67882 7.84696 8.20367 8.34202 9.25167 9.86843 10.56310 11.42064 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.001673 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.167060 B =16730.647490 C =17644.117736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.173 3.827 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.120 3.880 18 N -0.724 5.724 19 C 0.591 3.409 20 O -0.550 6.550 21 C -0.287 4.287 22 C 0.087 3.913 23 N -0.297 5.297 24 N -0.366 5.366 25 C 0.102 3.898 26 C 0.053 3.947 27 F -0.206 7.206 28 C 0.131 3.869 29 H 0.252 0.748 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.398 0.602 43 H 0.193 0.807 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.083 -23.498 11.248 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.166 4.166 17 C -0.003 4.003 18 N -0.374 5.374 19 C 0.377 3.623 20 O -0.429 6.429 21 C -0.302 4.302 22 C -0.101 4.101 23 N -0.117 5.117 24 N -0.146 5.146 25 C -0.020 4.020 26 C -0.003 4.003 27 F -0.187 7.187 28 C -0.019 4.019 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.232 0.768 43 H 0.210 0.790 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 12.598 -23.890 11.855 29.495 hybrid contribution 0.168 1.398 -0.128 1.414 sum 12.766 -22.493 11.727 28.397 Atomic orbital electron populations 1.69941 1.04973 1.25054 1.56540 1.24894 0.95652 0.97734 1.01964 0.86184 0.78760 0.83698 0.77527 1.21671 1.21706 1.20618 1.18962 0.90320 0.82359 1.43767 0.90815 1.44547 1.06172 1.01353 1.79992 1.21402 0.85231 0.89991 0.98580 1.23014 0.97508 0.99848 0.98565 1.22590 0.97169 0.97114 0.99320 1.20928 0.93897 0.86969 0.92730 0.95171 1.22028 0.99880 0.94690 0.99647 1.21834 0.99774 1.00219 0.94725 1.21506 0.96392 0.84606 0.97788 1.45851 1.54979 1.18631 1.17960 1.17206 0.77836 0.85379 0.81833 1.90796 1.61780 1.44946 1.45333 1.20348 1.14069 0.98259 0.97519 1.24143 0.96047 0.90134 0.99772 1.77167 1.18913 1.23428 0.92164 1.48258 1.41399 1.11559 1.13356 1.22331 0.95031 0.93111 0.91536 1.22153 0.94265 0.90949 0.92909 1.92810 1.78521 1.78770 1.68646 1.23033 0.93176 0.86108 0.99571 0.93772 0.95844 0.91349 0.92599 0.92526 0.92658 0.92037 0.92250 0.91597 0.91733 0.91718 0.91422 0.91322 0.76836 0.79029 0.87989 0.86941 0.89898 0.88920 0.79256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.58 55.49 0.59 -26.37 16 2 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.19 9.71 -15.06 -0.15 -6.33 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.89 3.13 -162.57 -0.51 -15.39 16 10 C 0.17 4.18 5.41 -2.53 -0.01 4.16 16 11 C -0.15 -2.81 7.09 -24.58 -0.17 -2.99 16 12 C -0.12 -2.08 5.71 -24.89 -0.14 -2.22 16 13 C 0.16 3.19 3.16 -66.95 -0.21 2.98 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.12 -2.13 4.71 -26.73 -0.13 -2.26 16 16 C -0.13 -1.60 5.10 -26.73 -0.14 -1.73 16 17 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 18 N -0.72 -7.63 5.55 -61.38 -0.34 -7.98 16 19 C 0.59 7.22 7.81 -12.52 -0.10 7.12 16 20 O -0.55 -8.90 16.90 5.27 0.09 -8.81 16 21 C -0.29 -2.71 6.13 -105.07 -0.64 -3.35 16 22 C 0.09 0.67 11.50 -16.98 -0.20 0.48 16 23 N -0.30 -2.50 12.33 30.86 0.38 -2.12 16 24 N -0.37 -2.51 3.65 -60.81 -0.22 -2.73 16 25 C 0.10 0.39 6.94 -4.04 -0.03 0.36 16 26 C 0.05 0.22 7.73 37.16 0.29 0.51 16 27 F -0.21 -1.28 17.36 2.25 0.04 -1.24 16 28 C 0.13 1.02 11.25 -16.56 -0.19 0.83 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 31 H 0.07 1.85 6.93 -51.93 -0.36 1.49 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.99 7.76 -51.93 -0.40 0.58 16 36 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 37 H 0.07 1.28 7.84 -51.93 -0.41 0.87 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.73 7.64 -51.93 -0.40 0.33 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.40 2.96 7.43 -40.82 -0.30 2.65 16 43 H 0.19 0.87 7.50 -52.49 -0.39 0.48 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.11 0.18 8.06 -51.93 -0.42 -0.24 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -34.75 398.62 -8.64 -43.39 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.71 Total: -0.70 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.93 Total: -1.19 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.10 Total: -54.58 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.75 -8.64 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.018 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds