Wall clock time and date at job start Tue Mar 31 2020 21:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47467 * 270.00430 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00817 * 3 2 1 6 6 H 1.48507 * 109.47018 * 150.00364 * 3 2 1 7 7 C 1.38812 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00849 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.65185 * 14.63308 * 9 7 2 11 11 C 1.54911 * 104.83140 * 155.90722 * 10 9 7 12 12 C 1.55161 * 101.58005 * 37.01348 * 11 10 9 13 13 C 1.47024 * 125.64675 * 194.67731 * 9 7 2 14 14 H 1.08994 * 109.88477 * 300.59251 * 13 9 7 15 15 C 1.52998 * 109.88155 * 61.60717 * 13 9 7 16 16 C 1.52999 * 109.47224 * 185.23867 * 15 13 9 17 17 C 1.53006 * 109.47419 * 174.94627 * 16 15 13 18 18 N 1.46497 * 109.47217 * 179.97438 * 17 16 15 19 19 C 1.34774 * 119.99818 * 180.02562 * 18 17 16 20 20 O 1.21609 * 120.00312 * 359.97438 * 19 18 17 21 21 C 1.47431 * 120.00149 * 180.02562 * 19 18 17 22 22 C 1.41290 * 126.41149 * 359.97438 * 21 19 18 23 23 N 1.30453 * 108.02131 * 180.02562 * 22 21 19 24 24 N 1.39932 * 108.89678 * 0.02562 * 23 22 21 25 25 C 1.46494 * 125.75230 * 180.02562 * 24 23 22 26 26 C 1.53000 * 109.47487 * 304.97126 * 25 24 23 27 27 F 1.39894 * 109.47789 * 180.02562 * 26 25 24 28 28 C 1.34260 * 108.49173 * 359.97438 * 24 23 22 29 29 H 0.97005 * 119.99728 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36744 * 274.75104 * 10 9 7 31 31 H 1.09005 * 110.36163 * 37.07058 * 10 9 7 32 32 H 1.09000 * 110.99974 * 155.08546 * 11 10 9 33 33 H 1.08998 * 111.00567 * 278.90052 * 11 10 9 34 34 H 1.09003 * 110.71726 * 206.13198 * 12 11 10 35 35 H 1.09002 * 110.71801 * 82.85814 * 12 11 10 36 36 H 1.09001 * 109.47595 * 65.23633 * 15 13 9 37 37 H 1.09003 * 109.47247 * 305.24019 * 15 13 9 38 38 H 1.08997 * 109.46927 * 54.94936 * 16 15 13 39 39 H 1.08996 * 109.47092 * 294.94564 * 16 15 13 40 40 H 1.09003 * 109.47069 * 59.99884 * 17 16 15 41 41 H 1.09001 * 109.47197 * 300.00407 * 17 16 15 42 42 H 0.96997 * 119.99953 * 0.02562 * 18 17 16 43 43 H 1.08000 * 125.99095 * 359.75512 * 22 21 19 44 44 H 1.09001 * 109.47399 * 64.97316 * 25 24 23 45 45 H 1.09004 * 109.47225 * 184.97377 * 25 24 23 46 46 H 1.09001 * 109.46956 * 300.00461 * 26 25 24 47 47 H 1.09004 * 109.46683 * 59.99920 * 26 25 24 48 48 H 1.08000 * 126.28814 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1081 -2.5525 -0.3027 11 6 -0.2479 -4.0214 -0.7745 12 6 0.7642 -4.7442 0.1533 13 6 1.8981 -3.7080 0.3017 14 1 2.7024 -3.9324 -0.3988 15 6 2.4356 -3.7265 1.7340 16 6 3.1445 -5.0569 1.9956 17 6 3.7903 -5.0267 3.3824 18 7 4.4685 -6.3007 3.6331 19 6 5.1115 -6.5036 4.8001 20 8 5.1290 -5.6289 5.6448 21 6 5.7946 -7.7855 5.0522 22 6 5.8606 -8.8882 4.1713 23 7 6.5504 -9.8296 4.7540 24 7 6.9524 -9.3812 6.0171 25 6 7.7463 -10.1440 6.9835 26 6 7.0603 -11.4826 7.2638 27 9 7.8181 -12.2108 8.1871 28 6 6.4887 -8.1337 6.1935 29 1 -0.4850 0.8401 0.0004 30 1 -0.7063 -2.3830 0.5926 31 1 -0.4093 -1.8688 -1.0964 32 1 -1.2605 -4.3897 -0.6103 33 1 0.0382 -4.1244 -1.8212 34 1 1.1340 -5.6561 -0.3157 35 1 0.3123 -4.9627 1.1209 36 1 1.6081 -3.6119 2.4342 37 1 3.1410 -2.9064 1.8680 38 1 3.9142 -5.2131 1.2398 39 1 2.4199 -5.8698 1.9499 40 1 3.0206 -4.8703 4.1383 41 1 4.5148 -4.2136 3.4282 42 1 4.4549 -6.9983 2.9592 43 1 5.4140 -8.9437 3.1895 44 1 8.7408 -10.3240 6.5753 45 1 7.8313 -9.5781 7.9112 46 1 6.0658 -11.3026 7.6721 47 1 6.9753 -12.0485 6.3361 48 1 6.6324 -7.5160 7.0677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567254989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:46 Heat of formation + Delta-G solvation = -23.039708 kcal Electronic energy + Delta-G solvation = -27957.723719 eV Core-core repulsion = 23769.906308 eV Total energy + Delta-G solvation = -4187.817411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.78899 -42.42748 -40.25513 -39.40112 -36.60136 -35.28987 -34.63005 -33.58182 -31.55637 -31.22156 -30.45905 -29.12957 -26.63454 -25.82558 -24.73481 -23.64062 -22.64756 -21.86242 -21.71755 -21.14243 -20.61344 -19.06444 -18.65903 -17.50107 -17.37149 -16.99563 -16.88745 -16.70587 -16.52165 -16.14913 -16.00639 -15.75436 -15.57376 -15.32919 -14.89341 -14.65695 -14.29101 -13.95688 -13.88027 -13.71308 -13.66188 -13.51384 -13.07428 -12.96831 -12.71426 -12.65315 -12.61481 -12.26101 -12.17977 -11.99003 -11.82787 -11.77657 -11.62896 -11.51041 -11.28069 -11.12043 -10.91627 -10.65843 -10.62600 -10.16019 -9.68468 -8.74611 -7.83377 -5.18641 0.46610 1.13579 1.20593 1.45263 1.46638 1.55138 2.31773 2.46781 2.51707 3.14632 3.35372 3.57024 3.73212 3.73622 3.77332 3.97749 4.00540 4.05964 4.09586 4.16714 4.21715 4.24309 4.31062 4.39242 4.49247 4.51032 4.67751 4.69771 4.75937 4.86711 4.87366 4.92862 5.04681 5.09275 5.18969 5.27738 5.36734 5.39847 5.49886 5.53821 5.58115 5.70845 5.74049 5.75398 5.82720 6.30401 6.43507 6.68140 7.15430 7.33484 7.85547 8.52668 9.28233 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.022109 B = 0.001673 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.167060 B =16730.647490 C =17644.117736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.619 5.619 10 C 0.174 3.826 11 C -0.138 4.138 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.107 4.107 17 C 0.127 3.873 18 N -0.710 5.710 19 C 0.589 3.411 20 O -0.599 6.599 21 C -0.311 4.311 22 C 0.095 3.905 23 N -0.318 5.318 24 N -0.361 5.361 25 C 0.098 3.902 26 C 0.057 3.943 27 F -0.217 7.217 28 C 0.137 3.863 29 H 0.245 0.755 30 H -0.009 1.009 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.416 0.584 43 H 0.221 0.779 44 H 0.110 0.890 45 H 0.137 0.863 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.417 -26.396 11.124 31.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.003 3.997 18 N -0.361 5.361 19 C 0.378 3.622 20 O -0.481 6.481 21 C -0.326 4.326 22 C -0.093 4.093 23 N -0.137 5.137 24 N -0.139 5.139 25 C -0.023 4.023 26 C 0.001 3.999 27 F -0.198 7.198 28 C -0.015 4.015 29 H 0.054 0.946 30 H 0.009 0.991 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.253 0.747 43 H 0.237 0.763 44 H 0.128 0.872 45 H 0.155 0.845 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 13.968 -26.875 11.706 32.472 hybrid contribution -0.197 2.236 -0.065 2.246 sum 13.771 -24.639 11.641 30.532 Atomic orbital electron populations 1.70153 1.06298 1.25073 1.58353 1.25666 0.96486 1.00927 1.02883 0.85203 0.77759 0.79735 0.77441 1.21277 1.22337 1.19550 1.19297 0.90703 0.83768 1.42115 0.90614 1.44867 1.06556 1.02635 1.80327 1.21205 0.84730 0.93176 0.95976 1.22885 0.99772 0.95704 0.99264 1.22589 0.95142 0.97360 0.99739 1.21234 0.95194 0.85347 0.93679 0.94566 1.21828 0.98928 0.96679 0.97896 1.21629 1.00320 0.97853 0.94758 1.21234 0.95630 0.85202 0.97606 1.45629 1.54145 1.18206 1.18151 1.17595 0.77378 0.85785 0.81398 1.90769 1.63686 1.46732 1.46906 1.20197 1.15642 0.97676 0.99092 1.24562 0.95287 0.88979 1.00510 1.77151 1.19547 1.24019 0.92969 1.48447 1.40866 1.11349 1.13250 1.22575 0.94755 0.92967 0.92006 1.22137 0.94369 0.90941 0.92456 1.92789 1.78869 1.79108 1.69068 1.23333 0.92089 0.86442 0.99610 0.94576 0.99140 0.95342 0.90172 0.91797 0.88369 0.91045 0.94028 0.94562 0.89979 0.89013 0.92905 0.93388 0.74667 0.76292 0.87207 0.84502 0.89369 0.89328 0.77727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.18 10.58 21.65 0.23 -57.95 16 2 C -0.07 -3.85 5.47 84.86 0.46 -3.39 16 3 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.23 -12.86 9.71 84.03 0.82 -12.05 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -31.33 3.13 -668.25 -2.09 -33.42 16 10 C 0.17 8.63 5.41 86.85 0.47 9.10 16 11 C -0.14 -4.86 7.09 31.99 0.23 -4.64 16 12 C -0.11 -3.31 5.71 31.78 0.18 -3.13 16 13 C 0.15 5.71 3.16 45.34 0.14 5.86 16 14 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.11 -3.87 4.71 30.59 0.14 -3.72 16 16 C -0.11 -2.41 5.10 30.60 0.16 -2.25 16 17 C 0.13 3.12 5.67 86.38 0.49 3.61 16 18 N -0.71 -13.60 5.55 -466.36 -2.59 -16.19 16 19 C 0.59 13.82 7.81 86.67 0.68 14.49 16 20 O -0.60 -19.48 16.90 -4.06 -0.07 -19.55 16 21 C -0.31 -5.32 6.13 -20.15 -0.12 -5.44 16 22 C 0.09 1.22 11.50 85.65 0.99 2.20 16 23 N -0.32 -4.61 12.33 -56.27 -0.69 -5.30 16 24 N -0.36 -4.15 3.65 -346.31 -1.26 -5.41 16 25 C 0.10 0.52 6.94 86.38 0.60 1.12 16 26 C 0.06 0.38 7.73 71.98 0.56 0.94 16 27 F -0.22 -2.38 17.36 44.97 0.78 -1.60 16 28 C 0.14 1.88 11.25 84.27 0.95 2.83 16 29 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 30 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 31 H 0.03 1.60 6.93 -2.38 -0.02 1.58 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.02 7.76 -2.39 -0.02 2.01 16 36 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 37 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 1.64 7.64 -2.39 -0.02 1.62 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.42 4.79 7.43 -92.71 -0.69 4.10 16 43 H 0.22 1.21 7.50 -2.91 -0.02 1.19 16 44 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.14 0.07 8.06 -2.38 -0.02 0.05 16 46 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.21 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -79.74 398.62 3.34 -76.41 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.27 Total: 8.72 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.73 Total: 5.53 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -6.41 Total: -118.27 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.07 Total: -19.55 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -79.74 3.34 -76.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.366 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds