Wall clock time and date at job start Tue Mar 31 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30375 * 125.96835 * 2 1 4 4 N 1.39917 * 109.02183 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.73919 * 179.97438 * 4 3 2 6 6 C 1.34409 * 108.51464 * 0.22857 * 4 3 2 7 7 F 1.35105 * 126.33968 * 179.75469 * 6 4 3 8 8 C 1.38500 * 107.31178 * 359.63682 * 6 4 3 9 9 C 1.47171 * 126.45406 * 180.13370 * 8 6 4 10 10 O 1.21638 * 120.00330 * 270.26250 * 9 8 6 11 11 N 1.34774 * 120.00052 * 90.26775 * 9 8 6 12 12 C 1.46926 * 120.62708 * 359.71680 * 11 9 8 13 13 C 1.52759 * 109.00868 * 233.58353 * 12 11 9 14 14 C 1.53049 * 109.38359 * 305.58792 * 13 12 11 15 15 C 1.53047 * 109.53360 * 61.24123 * 14 13 12 16 16 H 1.08995 * 109.52486 * 58.59976 * 15 14 13 17 17 C 1.52998 * 109.49273 * 178.68569 * 15 14 13 18 18 C 1.53005 * 109.46985 * 184.83696 * 17 15 14 19 19 N 1.46498 * 109.47464 * 179.97438 * 18 17 15 20 20 C 1.36932 * 120.00203 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99695 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00282 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99898 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47292 * 90.00098 * 24 22 20 26 26 H 1.48498 * 109.46787 * 210.00248 * 24 22 20 27 27 H 1.48500 * 109.46656 * 329.99924 * 24 22 20 28 28 C 1.46928 * 120.63279 * 179.97438 * 11 9 8 29 29 H 1.09006 * 109.47205 * 89.97893 * 1 2 3 30 30 H 1.09002 * 109.47523 * 209.97718 * 1 2 3 31 31 H 1.09000 * 109.47682 * 329.97705 * 1 2 3 32 32 H 1.09001 * 109.47060 * 90.03153 * 5 4 3 33 33 H 1.09004 * 109.47073 * 210.02641 * 5 4 3 34 34 H 1.09000 * 109.47212 * 330.02724 * 5 4 3 35 35 H 1.08995 * 109.59060 * 353.42082 * 12 11 9 36 36 H 1.09001 * 109.58632 * 113.84352 * 12 11 9 37 37 H 1.09001 * 109.57030 * 185.55623 * 13 12 11 38 38 H 1.09001 * 109.38661 * 65.51452 * 13 12 11 39 39 H 1.08997 * 109.45649 * 301.22017 * 14 13 12 40 40 H 1.09000 * 109.45628 * 181.25834 * 14 13 12 41 41 H 1.09000 * 109.47246 * 304.83245 * 17 15 14 42 42 H 1.08994 * 109.47688 * 64.83800 * 17 15 14 43 43 H 1.09000 * 109.46760 * 299.99846 * 18 17 15 44 44 H 1.08997 * 109.47253 * 59.99329 * 18 17 15 45 45 H 0.97005 * 119.99510 * 359.97438 * 19 18 17 46 46 H 0.96993 * 120.00278 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.58497 * 246.15465 * 28 11 9 48 48 H 1.08999 * 109.58294 * 6.58270 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0006 5 6 4.7763 1.5355 -0.0013 6 6 3.6478 -0.6962 -0.0060 7 9 4.7576 -1.4667 -0.0130 8 6 2.3374 -1.1444 -0.0005 9 6 1.8930 -2.5474 -0.0008 10 8 1.7090 -3.1270 -1.0543 11 7 1.6900 -3.1902 1.1663 12 6 1.9139 -2.5055 2.4468 13 6 2.8687 -3.3410 3.2975 14 6 2.3174 -4.7624 3.4323 15 6 2.2140 -5.4047 2.0470 16 1 3.1976 -5.4187 1.5777 17 6 1.6937 -6.8368 2.1859 18 6 1.7045 -7.5184 0.8161 19 7 1.2070 -8.8898 0.9490 20 6 1.1262 -9.6987 -0.1529 21 1 1.4289 -9.3255 -1.1201 22 6 0.6553 -10.9984 -0.0268 23 7 0.5771 -11.7758 -1.0861 24 14 0.1324 -11.6442 1.6462 25 1 -1.3111 -11.3652 1.8555 26 1 0.3673 -13.1092 1.7068 27 1 0.9254 -10.9714 2.7063 28 6 1.2458 -4.5907 1.1822 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5142 32 1 5.0661 1.7554 1.0262 33 1 5.6044 1.0480 -0.5159 34 1 4.5253 2.4636 -0.5147 35 1 2.3523 -1.5243 2.2647 36 1 0.9652 -2.3924 2.9715 37 1 2.9642 -2.8926 4.2864 38 1 3.8466 -3.3741 2.8171 39 1 1.3292 -4.7265 3.8908 40 1 2.9865 -5.3535 4.0577 41 1 2.3338 -7.3910 2.8724 42 1 0.6754 -6.8175 2.5740 43 1 1.0644 -6.9642 0.1296 44 1 2.7228 -7.5377 0.4278 45 1 0.9355 -9.2251 1.8178 46 1 0.2477 -12.6838 -0.9980 47 1 0.2417 -4.6508 1.6019 48 1 1.2437 -4.9848 0.1660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568073820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:05 Heat of formation + Delta-G solvation = 8.601615 kcal Electronic energy + Delta-G solvation = -29918.075336 eV Core-core repulsion = 25731.629995 eV Total energy + Delta-G solvation = -4186.445340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.67531 -41.83952 -40.02851 -37.76524 -35.47152 -34.62745 -33.48961 -32.19416 -31.10088 -30.71211 -29.91264 -27.86408 -26.76988 -25.38483 -24.18899 -22.64223 -22.23007 -21.14345 -20.83858 -20.28058 -19.40859 -18.07198 -17.46767 -17.40387 -16.90493 -16.43440 -16.24645 -15.25347 -15.11365 -14.85323 -14.67310 -14.48893 -14.19883 -14.02420 -13.92918 -13.78956 -13.53262 -13.44391 -13.25433 -13.13334 -12.82717 -12.75371 -12.70547 -12.54330 -12.28839 -11.56664 -11.30679 -11.28367 -11.22959 -11.15770 -10.88312 -10.58004 -10.51700 -10.21192 -10.06380 -9.97223 -9.77302 -9.51619 -9.06454 -8.81563 -8.72758 -7.15198 -5.69564 -3.04713 0.95247 1.48026 1.85703 2.37660 2.92191 3.41728 3.41743 3.44169 3.49185 3.88068 4.31612 4.43961 4.53527 4.54170 4.65033 4.65107 4.70321 4.78908 4.82758 4.86168 4.92127 5.07744 5.23554 5.24659 5.32746 5.38748 5.44054 5.50310 5.56354 5.59138 5.65070 5.72937 5.85289 5.90464 5.91167 5.98191 6.06328 6.16723 6.24226 6.25558 6.34861 6.47525 6.84281 6.86549 6.93707 7.25944 8.06031 8.08413 8.49674 9.29173 10.01352 10.21547 11.49112 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.002417 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.436448 B =11579.728460 C =11870.380266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.132 3.868 3 N -0.271 5.271 4 N -0.375 5.375 5 C 0.092 3.908 6 C 0.292 3.708 7 F -0.086 7.086 8 C -0.282 4.282 9 C 0.596 3.404 10 O -0.521 6.521 11 N -0.601 5.601 12 C 0.111 3.889 13 C -0.135 4.135 14 C -0.114 4.114 15 C -0.096 4.096 16 H 0.076 0.924 17 C -0.122 4.122 18 C 0.154 3.846 19 N -0.758 5.758 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.001 3.999 23 N -0.936 5.936 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.114 3.886 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.025 0.975 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.072 0.928 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 32.099 10.427 34.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.093 5.093 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.145 3.855 7 F -0.066 7.066 8 C -0.298 4.298 9 C 0.381 3.619 10 O -0.396 6.396 11 N -0.334 5.334 12 C -0.012 4.012 13 C -0.173 4.173 14 C -0.152 4.152 15 C -0.116 4.116 16 H 0.094 0.906 17 C -0.160 4.160 18 C 0.027 3.973 19 N -0.403 5.403 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.194 4.194 23 N -0.584 5.584 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.008 4.008 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.192 0.808 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.338 33.033 9.609 34.981 hybrid contribution 0.248 -1.544 1.182 1.960 sum 6.586 31.489 10.791 33.932 Atomic orbital electron populations 1.20336 0.85067 1.04057 1.04282 1.22210 0.97247 0.87907 0.96063 1.77322 0.84107 1.21102 1.26814 1.48677 1.07320 1.02570 1.57395 1.22086 0.83634 0.94704 1.04374 1.17777 0.83392 0.81840 1.02518 1.91682 1.49601 1.71534 1.93748 1.19658 0.90377 0.95705 1.24101 1.17078 0.77192 0.84012 0.83596 1.90855 1.50654 1.67212 1.30849 1.48071 1.66721 1.13215 1.05377 1.21586 0.99697 0.95809 0.84092 1.21852 0.99288 0.96377 0.99802 1.21592 1.01536 0.95034 0.97039 1.21466 0.99926 0.94775 0.95439 0.90571 1.21777 1.01281 0.93653 0.99332 1.20703 0.97251 0.85583 0.93780 1.42726 1.79490 1.10475 1.07609 1.19101 1.36096 0.93161 0.88753 0.89205 1.24688 1.01588 0.96456 0.96692 1.69707 1.52911 1.08106 1.27689 0.86518 0.78618 0.78131 0.85105 1.21110 1.21805 1.20384 1.21888 0.97084 0.78732 1.03081 0.89267 0.89856 0.89835 0.89723 0.88952 0.88076 0.90466 0.91102 0.90792 0.91573 0.91595 0.91445 0.91598 0.91760 0.95223 0.95681 0.80778 0.93139 0.91023 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.28 36.00 0.37 -0.21 16 2 C 0.13 1.33 7.26 -82.01 -0.60 0.73 16 3 N -0.27 -2.70 12.49 33.90 0.42 -2.27 16 4 N -0.37 -3.30 3.98 -67.93 -0.27 -3.57 16 5 C 0.09 0.39 11.43 59.85 0.68 1.07 16 6 C 0.29 3.11 8.59 -16.33 -0.14 2.97 16 7 F -0.09 -0.93 17.31 2.25 0.04 -0.90 16 8 C -0.28 -3.31 3.87 -104.97 -0.41 -3.71 16 9 C 0.60 8.33 7.24 -12.64 -0.09 8.24 16 10 O -0.52 -9.51 16.52 5.24 0.09 -9.42 16 11 N -0.60 -7.08 2.98 -174.37 -0.52 -7.60 16 12 C 0.11 0.95 6.31 -3.93 -0.02 0.93 16 13 C -0.13 -1.09 6.06 -26.83 -0.16 -1.26 16 14 C -0.11 -1.08 5.17 -26.68 -0.14 -1.22 16 15 C -0.10 -1.19 2.34 -90.48 -0.21 -1.40 16 16 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.12 -1.82 4.80 -26.73 -0.13 -1.95 16 18 C 0.15 3.09 6.02 -4.04 -0.02 3.06 16 19 N -0.76 -18.76 5.41 -59.91 -0.32 -19.08 16 20 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 21 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 22 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 23 N -0.94 -30.30 13.97 55.49 0.78 -29.52 16 24 Si 0.89 22.62 27.74 -169.99 -4.71 17.91 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 28 C 0.11 1.48 5.33 -3.69 -0.02 1.46 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.64 6.25 -51.93 -0.32 0.31 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.61 6.70 -51.93 -0.35 0.27 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.36 8.57 5.53 -40.82 -0.23 8.34 16 46 H 0.26 7.93 8.31 -40.82 -0.34 7.60 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.10 1.64 5.72 -51.93 -0.30 1.34 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -36.99 392.50 -7.28 -44.26 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.54 Total: 2.92 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.14 Total: 1.36 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.08 Total: -62.05 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.90 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.99 -7.28 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.866 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds