Wall clock time and date at job start Tue Mar 31 2020 22:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30375 * 125.96835 * 2 1 4 4 N 1.39917 * 109.02183 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.73919 * 179.97438 * 4 3 2 6 6 C 1.34409 * 108.51464 * 0.22857 * 4 3 2 7 7 F 1.35105 * 126.33968 * 179.75469 * 6 4 3 8 8 C 1.38500 * 107.31178 * 359.63682 * 6 4 3 9 9 C 1.47171 * 126.45406 * 180.13370 * 8 6 4 10 10 O 1.21638 * 120.00330 * 270.26250 * 9 8 6 11 11 N 1.34774 * 120.00052 * 90.26775 * 9 8 6 12 12 C 1.46926 * 120.62708 * 359.71680 * 11 9 8 13 13 C 1.52759 * 109.00868 * 233.58353 * 12 11 9 14 14 C 1.53049 * 109.38359 * 305.58792 * 13 12 11 15 15 C 1.53047 * 109.53360 * 61.24123 * 14 13 12 16 16 H 1.08995 * 109.52486 * 58.59976 * 15 14 13 17 17 C 1.52998 * 109.49273 * 178.68569 * 15 14 13 18 18 C 1.53005 * 109.46985 * 184.83696 * 17 15 14 19 19 N 1.46498 * 109.47464 * 179.97438 * 18 17 15 20 20 C 1.36932 * 120.00203 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99695 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00282 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99898 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47292 * 90.00098 * 24 22 20 26 26 H 1.48498 * 109.46787 * 210.00248 * 24 22 20 27 27 H 1.48500 * 109.46656 * 329.99924 * 24 22 20 28 28 C 1.46928 * 120.63279 * 179.97438 * 11 9 8 29 29 H 1.09006 * 109.47205 * 89.97893 * 1 2 3 30 30 H 1.09002 * 109.47523 * 209.97718 * 1 2 3 31 31 H 1.09000 * 109.47682 * 329.97705 * 1 2 3 32 32 H 1.09001 * 109.47060 * 90.03153 * 5 4 3 33 33 H 1.09004 * 109.47073 * 210.02641 * 5 4 3 34 34 H 1.09000 * 109.47212 * 330.02724 * 5 4 3 35 35 H 1.08995 * 109.59060 * 353.42082 * 12 11 9 36 36 H 1.09001 * 109.58632 * 113.84352 * 12 11 9 37 37 H 1.09001 * 109.57030 * 185.55623 * 13 12 11 38 38 H 1.09001 * 109.38661 * 65.51452 * 13 12 11 39 39 H 1.08997 * 109.45649 * 301.22017 * 14 13 12 40 40 H 1.09000 * 109.45628 * 181.25834 * 14 13 12 41 41 H 1.09000 * 109.47246 * 304.83245 * 17 15 14 42 42 H 1.08994 * 109.47688 * 64.83800 * 17 15 14 43 43 H 1.09000 * 109.46760 * 299.99846 * 18 17 15 44 44 H 1.08997 * 109.47253 * 59.99329 * 18 17 15 45 45 H 0.97005 * 119.99510 * 359.97438 * 19 18 17 46 46 H 0.96993 * 120.00278 * 180.02562 * 23 22 20 47 47 H 1.08999 * 109.58497 * 246.15465 * 28 11 9 48 48 H 1.08999 * 109.58294 * 6.58270 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0006 5 6 4.7763 1.5355 -0.0013 6 6 3.6478 -0.6962 -0.0060 7 9 4.7576 -1.4667 -0.0130 8 6 2.3374 -1.1444 -0.0005 9 6 1.8930 -2.5474 -0.0008 10 8 1.7090 -3.1270 -1.0543 11 7 1.6900 -3.1902 1.1663 12 6 1.9139 -2.5055 2.4468 13 6 2.8687 -3.3410 3.2975 14 6 2.3174 -4.7624 3.4323 15 6 2.2140 -5.4047 2.0470 16 1 3.1976 -5.4187 1.5777 17 6 1.6937 -6.8368 2.1859 18 6 1.7045 -7.5184 0.8161 19 7 1.2070 -8.8898 0.9490 20 6 1.1262 -9.6987 -0.1529 21 1 1.4289 -9.3255 -1.1201 22 6 0.6553 -10.9984 -0.0268 23 7 0.5771 -11.7758 -1.0861 24 14 0.1324 -11.6442 1.6462 25 1 -1.3111 -11.3652 1.8555 26 1 0.3673 -13.1092 1.7068 27 1 0.9254 -10.9714 2.7063 28 6 1.2458 -4.5907 1.1822 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5142 32 1 5.0661 1.7554 1.0262 33 1 5.6044 1.0480 -0.5159 34 1 4.5253 2.4636 -0.5147 35 1 2.3523 -1.5243 2.2647 36 1 0.9652 -2.3924 2.9715 37 1 2.9642 -2.8926 4.2864 38 1 3.8466 -3.3741 2.8171 39 1 1.3292 -4.7265 3.8908 40 1 2.9865 -5.3535 4.0577 41 1 2.3338 -7.3910 2.8724 42 1 0.6754 -6.8175 2.5740 43 1 1.0644 -6.9642 0.1296 44 1 2.7228 -7.5377 0.4278 45 1 0.9355 -9.2251 1.8178 46 1 0.2477 -12.6838 -0.9980 47 1 0.2417 -4.6508 1.6019 48 1 1.2437 -4.9848 0.1660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568073820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:04 Heat of formation + Delta-G solvation = -16.900360 kcal Electronic energy + Delta-G solvation = -29919.181184 eV Core-core repulsion = 25731.629995 eV Total energy + Delta-G solvation = -4187.551189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.50564 -42.60925 -40.99808 -38.87194 -37.09831 -35.36221 -34.89100 -33.53528 -32.63664 -31.60679 -30.53831 -29.28494 -27.52297 -26.16627 -25.74147 -23.83821 -23.38159 -22.30147 -21.90504 -21.23600 -20.27857 -19.63278 -18.84220 -18.25482 -17.73266 -17.28472 -17.19302 -16.63761 -16.24021 -15.88625 -15.80338 -15.77405 -15.34879 -14.97430 -14.91632 -14.73896 -14.53894 -14.42587 -14.31313 -14.24153 -13.85574 -13.77870 -13.65378 -13.30421 -13.12256 -13.05091 -12.87733 -12.64165 -12.32105 -12.09291 -12.07712 -11.93521 -11.84234 -11.74357 -11.58974 -11.22642 -11.12338 -10.95517 -10.45628 -9.86823 -9.70543 -9.31981 -8.03988 -5.39024 0.16924 0.83171 1.07784 1.34052 1.37223 1.43226 1.50599 1.98909 2.48526 2.70262 3.17834 3.26483 3.48559 3.61346 3.70758 3.86625 3.91553 3.91747 4.04972 4.10360 4.21281 4.29304 4.31780 4.39537 4.48270 4.49323 4.57490 4.65918 4.68148 4.71974 4.73460 4.84691 4.85878 4.87211 4.93320 5.04871 5.11401 5.22188 5.27662 5.30436 5.37549 5.48549 5.52662 5.57687 5.73492 6.19852 6.20187 6.29901 7.02699 7.06476 7.81099 8.03781 9.17963 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.002417 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.436448 B =11579.728460 C =11870.380266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.131 3.869 3 N -0.277 5.277 4 N -0.365 5.365 5 C 0.080 3.920 6 C 0.287 3.713 7 F -0.091 7.091 8 C -0.303 4.303 9 C 0.594 3.406 10 O -0.580 6.580 11 N -0.594 5.594 12 C 0.108 3.892 13 C -0.129 4.129 14 C -0.108 4.108 15 C -0.087 4.087 16 H 0.058 0.942 17 C -0.107 4.107 18 C 0.150 3.850 19 N -0.757 5.757 20 C -0.243 4.243 21 H 0.046 0.954 22 C -0.069 4.069 23 N -0.986 5.986 24 Si 0.966 3.034 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.246 1.246 28 C 0.113 3.887 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.018 0.982 44 H 0.009 0.991 45 H 0.369 0.631 46 H 0.259 0.741 47 H 0.088 0.912 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 34.263 14.602 37.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.100 5.100 4 N -0.150 5.150 5 C -0.058 4.058 6 C 0.138 3.862 7 F -0.070 7.070 8 C -0.319 4.319 9 C 0.380 3.620 10 O -0.459 6.459 11 N -0.325 5.325 12 C -0.014 4.014 13 C -0.167 4.167 14 C -0.146 4.146 15 C -0.107 4.107 16 H 0.076 0.924 17 C -0.146 4.146 18 C 0.024 3.976 19 N -0.404 5.404 20 C -0.374 4.374 21 H 0.064 0.936 22 C -0.260 4.260 23 N -0.637 5.637 24 Si 0.792 3.208 25 H -0.200 1.200 26 H -0.220 1.220 27 H -0.171 1.171 28 C -0.009 4.009 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.203 0.797 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.272 35.278 13.850 38.415 hybrid contribution 0.360 -2.130 -0.237 2.173 sum 6.632 33.148 13.613 36.443 Atomic orbital electron populations 1.20435 0.83542 1.05143 1.04586 1.22523 0.98252 0.87128 0.95593 1.77298 0.84628 1.21038 1.27012 1.49028 1.07982 1.02216 1.55750 1.22524 0.82460 0.94595 1.06245 1.17786 0.82977 0.82720 1.02720 1.91667 1.49693 1.71839 1.93806 1.19558 0.91399 0.94837 1.26142 1.17458 0.76370 0.84826 0.83298 1.90820 1.53455 1.68702 1.32959 1.48157 1.65395 1.12679 1.06265 1.21869 1.01237 0.95821 0.82465 1.21840 0.98226 0.95564 1.01096 1.21564 1.02928 0.95557 0.94513 1.21363 0.98426 0.93438 0.97511 0.92367 1.21657 1.02663 0.94535 0.95697 1.20853 0.95649 0.83800 0.97268 1.42685 1.79587 1.11569 1.06511 1.19036 1.35530 0.94089 0.88759 0.93577 1.25669 1.01971 0.96594 1.01751 1.69916 1.54335 1.08574 1.30827 0.85254 0.78798 0.77064 0.79720 1.19962 1.22048 1.17072 1.21779 0.98314 0.79646 1.01130 0.89329 0.89823 0.87623 0.87541 0.87761 0.86667 0.89897 0.88694 0.87660 0.92808 0.89885 0.90484 0.90546 0.90223 0.96390 0.97248 0.79724 0.93204 0.89389 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.28 71.23 0.73 -0.34 16 2 C 0.13 2.53 7.26 43.55 0.32 2.85 16 3 N -0.28 -5.10 12.49 -46.65 -0.58 -5.69 16 4 N -0.37 -5.89 3.98 -368.84 -1.47 -7.36 16 5 C 0.08 0.49 11.43 127.77 1.46 1.95 16 6 C 0.29 5.98 8.59 84.36 0.72 6.71 16 7 F -0.09 -1.96 17.31 44.97 0.78 -1.18 16 8 C -0.30 -7.10 3.87 -20.09 -0.08 -7.18 16 9 C 0.59 17.21 7.24 86.59 0.63 17.84 16 10 O -0.58 -22.81 16.52 -4.15 -0.07 -22.88 16 11 N -0.59 -13.81 2.98 -823.83 -2.45 -16.26 16 12 C 0.11 1.57 6.31 86.22 0.54 2.11 16 13 C -0.13 -1.66 6.06 30.53 0.19 -1.48 16 14 C -0.11 -1.66 5.17 30.63 0.16 -1.51 16 15 C -0.09 -2.06 2.34 -10.70 -0.03 -2.09 16 16 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.11 -3.02 4.80 30.60 0.15 -2.88 16 18 C 0.15 6.17 6.02 86.38 0.52 6.69 16 19 N -0.76 -37.51 5.41 -343.46 -1.86 -39.37 16 20 C -0.24 -14.86 10.47 84.03 0.88 -13.98 16 21 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 23 N -0.99 -65.81 13.97 21.65 0.30 -65.51 16 24 Si 0.97 46.38 27.74 68.60 1.90 48.29 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 28 C 0.11 2.96 5.33 86.37 0.46 3.42 16 29 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.12 8.01 -2.39 -0.02 1.10 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 1.17 6.25 -2.39 -0.01 1.15 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.02 0.79 6.70 -2.39 -0.02 0.77 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.37 16.79 5.53 -92.70 -0.51 16.27 16 46 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.06 2.15 5.72 -2.39 -0.01 2.14 16 Total: -1.00 -85.05 392.50 4.07 -80.98 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.40 Total: 20.63 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 7.12 Total: 8.35 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -6.06 Total: -134.19 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.07 Total: -22.88 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.29 kcal Total: -85.05 4.07 -80.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568073820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.081 kcal (2) G-P(sol) polarization free energy of solvation -85.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds