Wall clock time and date at job start Tue Mar 31 2020 20:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00190 * 2 1 4 4 C 1.53010 * 109.46816 * 305.90420 * 3 2 1 5 5 C 1.50699 * 109.47527 * 185.90827 * 3 2 1 6 6 O 1.21272 * 120.00248 * 214.99835 * 5 3 2 7 7 N 1.34780 * 119.99746 * 34.99391 * 5 3 2 8 8 C 1.46499 * 120.00241 * 180.02562 * 7 5 3 9 9 H 1.09005 * 109.46917 * 34.99913 * 8 7 5 10 10 C 1.53003 * 109.47246 * 275.00292 * 8 7 5 11 11 C 1.53002 * 109.47603 * 154.99653 * 8 7 5 12 12 C 1.53002 * 109.47049 * 295.00400 * 11 8 7 13 13 N 1.46502 * 109.46649 * 179.97438 * 12 11 8 14 14 C 1.36931 * 119.99632 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00334 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99827 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99921 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46914 * 90.00196 * 18 16 14 20 20 H 1.48496 * 109.47424 * 210.00156 * 18 16 14 21 21 H 1.48504 * 109.47366 * 330.00527 * 18 16 14 22 22 C 1.50696 * 109.47536 * 65.90359 * 3 2 1 23 23 C 1.38216 * 120.01403 * 5.38619 * 22 3 2 24 24 C 1.38219 * 120.02843 * 179.97438 * 23 22 3 25 25 C 1.38270 * 120.05286 * 0.02871 * 24 23 22 26 26 C 1.38178 * 120.01990 * 359.97438 * 25 24 23 27 27 C 1.38441 * 120.01171 * 185.11247 * 22 3 2 28 28 F 1.35095 * 120.02921 * 359.97438 * 27 22 3 29 29 H 1.08992 * 109.47374 * 185.89903 * 1 2 3 30 30 H 1.09001 * 109.46955 * 305.90428 * 1 2 3 31 31 H 1.09007 * 109.46863 * 65.90294 * 1 2 3 32 32 H 1.08997 * 109.46643 * 60.00011 * 4 3 2 33 33 H 1.08999 * 109.46913 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47095 * 299.99996 * 4 3 2 35 35 H 0.97000 * 120.00297 * 359.97438 * 7 5 3 36 36 H 1.08997 * 109.46728 * 299.99398 * 10 8 7 37 37 H 1.08999 * 109.46681 * 59.99401 * 10 8 7 38 38 H 1.08999 * 109.46943 * 179.97438 * 10 8 7 39 39 H 1.09002 * 109.46666 * 55.00150 * 11 8 7 40 40 H 1.09004 * 109.47031 * 175.00037 * 11 8 7 41 41 H 1.08994 * 109.47019 * 299.99672 * 12 11 8 42 42 H 1.09000 * 109.47194 * 59.99518 * 12 11 8 43 43 H 0.97000 * 120.00513 * 0.02562 * 13 12 11 44 44 H 0.97002 * 119.99569 * 179.97438 * 17 16 14 45 45 H 1.08004 * 119.98459 * 359.96005 * 23 22 3 46 46 H 1.08004 * 119.97203 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.98819 * 179.97438 * 25 24 23 48 48 H 1.08003 * 120.00996 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4448 2.1154 -1.1685 5 6 3.5056 1.1896 -0.1462 6 8 4.2333 1.9747 0.4236 7 7 4.0343 0.2132 -0.9103 8 6 5.4880 0.1002 -1.0521 9 1 5.9675 0.3817 -0.1146 10 6 5.9655 1.0309 -2.1687 11 6 5.8559 -1.3438 -1.3994 12 6 5.4910 -2.2588 -0.2287 13 7 5.8427 -3.6414 -0.5616 14 6 5.6069 -4.6440 0.3407 15 1 5.1613 -4.4156 1.2977 16 6 5.9407 -5.9541 0.0256 17 7 5.7135 -6.9178 0.8928 18 14 6.7108 -6.3493 -1.6297 19 1 8.1891 -6.2610 -1.5215 20 1 6.3257 -7.7238 -2.0393 21 1 6.2298 -5.3774 -2.6442 22 6 1.6847 2.0004 1.2969 23 6 1.0239 1.3172 2.3005 24 6 0.7257 1.9542 3.4903 25 6 1.0873 3.2755 3.6781 26 6 1.7479 3.9604 2.6762 27 6 2.0524 3.3216 1.4859 28 9 2.7037 3.9886 0.5081 29 1 -0.3634 -1.0221 0.1056 30 1 -0.3633 0.6027 0.8324 31 1 -0.3633 0.4196 -0.9382 32 1 0.3632 2.1992 -1.0627 33 1 1.8885 3.1110 -1.1688 34 1 1.6803 1.6128 -2.1067 35 1 3.4523 -0.4151 -1.3658 36 1 5.4861 0.7493 -3.1062 37 1 5.7034 2.0595 -1.9212 38 1 7.0472 0.9470 -2.2739 39 1 5.3071 -1.6547 -2.2884 40 1 6.9268 -1.4096 -1.5920 41 1 6.0398 -1.9478 0.6602 42 1 4.4202 -2.1928 -0.0361 43 1 6.2433 -3.8466 -1.4209 44 1 5.9464 -7.8333 0.6724 45 1 0.7403 0.2853 2.1547 46 1 0.2097 1.4194 4.2741 47 1 0.8534 3.7722 4.6080 48 1 2.0300 4.9926 2.8229 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568639260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:44 Heat of formation + Delta-G solvation = -78.148264 kcal Electronic energy + Delta-G solvation = -30557.419991 eV Core-core repulsion = 26334.920143 eV Total energy + Delta-G solvation = -4222.499848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.98976 -40.86496 -39.09886 -37.86985 -36.58299 -34.46456 -32.79881 -31.91268 -31.05841 -30.74935 -29.55149 -28.25009 -27.59323 -24.45009 -23.89265 -22.98547 -22.63186 -21.29921 -20.70050 -20.17038 -18.16973 -17.94368 -17.49046 -16.92314 -16.30552 -16.03640 -15.76812 -15.61501 -15.16574 -15.03578 -14.67373 -14.47042 -14.23750 -13.97694 -13.74816 -13.48201 -13.29164 -13.17117 -13.16118 -12.79816 -12.59475 -12.53130 -12.42606 -12.20688 -12.01814 -11.84697 -11.75764 -11.48030 -11.20207 -11.07442 -10.84726 -10.69477 -10.47485 -10.11678 -10.08238 -9.88972 -9.55894 -9.15551 -9.00687 -8.85084 -8.82039 -7.19329 -5.73408 -3.08631 0.87606 0.99732 2.45783 3.07358 3.38874 3.40330 3.41654 3.43672 3.46689 4.05952 4.18492 4.48170 4.56999 4.61739 4.64208 4.76726 4.84595 5.02045 5.03414 5.09237 5.15595 5.19900 5.25194 5.30476 5.34472 5.48141 5.53760 5.55098 5.65984 5.67853 5.72174 5.83698 5.84580 5.86778 5.97244 5.99149 6.03512 6.15533 6.19541 6.25677 6.53763 6.65162 6.69621 6.79211 6.82226 7.55952 8.03776 8.21465 8.45653 9.25013 9.97242 10.17401 11.45227 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002991 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.777501 B = 9359.178920 C =10190.844473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.360 6.360 3 C 0.145 3.855 4 C -0.182 4.182 5 C 0.537 3.463 6 O -0.524 6.524 7 N -0.703 5.703 8 C 0.144 3.856 9 H 0.090 0.910 10 C -0.161 4.161 11 C -0.138 4.138 12 C 0.157 3.843 13 N -0.757 5.757 14 C -0.241 4.241 15 H 0.089 0.911 16 C 0.002 3.998 17 N -0.936 5.936 18 Si 0.886 3.114 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.143 4.143 23 C -0.078 4.078 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.163 4.163 27 C 0.141 3.859 28 F -0.126 7.126 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.407 0.593 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 23.883 -2.307 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.279 6.279 3 C 0.102 3.898 4 C -0.239 4.239 5 C 0.321 3.679 6 O -0.400 6.400 7 N -0.355 5.355 8 C 0.040 3.960 9 H 0.108 0.892 10 C -0.219 4.219 11 C -0.176 4.176 12 C 0.030 3.970 13 N -0.403 5.403 14 C -0.371 4.371 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.717 3.283 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.144 4.144 23 C -0.096 4.096 24 C -0.155 4.155 25 C -0.103 4.103 26 C -0.182 4.182 27 C 0.121 3.879 28 F -0.104 7.104 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.243 0.757 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.160 0.840 46 H 0.149 0.851 47 H 0.150 0.850 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.735 24.172 -1.740 27.377 hybrid contribution 0.205 -0.499 -1.474 1.569 sum -12.529 23.674 -3.213 26.977 Atomic orbital electron populations 1.23145 0.80479 1.03741 1.01076 1.88071 1.20588 1.24473 1.94738 1.20344 0.91893 0.84813 0.92789 1.22520 1.02350 1.01925 0.97151 1.19661 0.88126 0.81369 0.78779 1.90741 1.60262 1.41977 1.46985 1.46008 1.08101 1.31615 1.49742 1.20997 0.79832 0.95352 0.99867 0.89205 1.22165 1.01516 0.99863 0.98366 1.22108 1.02370 0.93015 1.00151 1.20625 0.97998 0.84003 0.94362 1.42713 1.76348 1.03038 1.18174 1.19077 1.34302 0.86255 0.97506 0.89286 1.24680 1.01379 0.95582 0.97686 1.69710 1.53743 0.99903 1.35027 0.86519 0.79474 0.77303 0.85053 1.21126 1.21784 1.20371 1.19964 1.03627 0.93352 0.97497 1.21103 0.96135 1.00411 0.91902 1.21189 1.01728 0.95090 0.97487 1.21054 0.96475 0.94496 0.98311 1.21128 1.02767 1.01383 0.92934 1.17317 0.94130 0.89768 0.86639 1.91475 1.78478 1.79981 1.60487 0.88570 0.92576 0.93327 0.90649 0.89578 0.90503 0.75711 0.92541 0.92278 0.91511 0.91399 0.90306 0.95641 0.95159 0.80767 0.93120 0.83952 0.85085 0.85021 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.18 101.05 0.93 1.02 16 2 O -0.36 -4.18 8.93 -35.23 -0.31 -4.50 16 3 C 0.14 1.73 0.79 -92.92 -0.07 1.66 16 4 C -0.18 -1.74 7.77 37.16 0.29 -1.45 16 5 C 0.54 7.81 6.58 -10.98 -0.07 7.74 16 6 O -0.52 -9.08 13.80 5.56 0.08 -9.00 16 7 N -0.70 -9.45 4.44 -53.80 -0.24 -9.69 16 8 C 0.14 1.97 2.57 -67.93 -0.17 1.79 16 9 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 10 C -0.16 -1.86 9.48 37.16 0.35 -1.50 16 11 C -0.14 -2.07 4.87 -26.73 -0.13 -2.20 16 12 C 0.16 3.13 6.15 -4.04 -0.02 3.10 16 13 N -0.76 -18.42 5.41 -59.91 -0.32 -18.74 16 14 C -0.24 -7.03 10.47 -15.06 -0.16 -7.18 16 15 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 16 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 17 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16 18 Si 0.89 22.33 27.73 -169.99 -4.71 17.62 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 21 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 22 C -0.14 -1.73 4.30 -104.56 -0.45 -2.18 16 23 C -0.08 -0.83 7.66 -39.60 -0.30 -1.13 16 24 C -0.14 -1.22 10.04 -39.58 -0.40 -1.62 16 25 C -0.09 -0.73 10.04 -39.59 -0.40 -1.13 16 26 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 27 C 0.14 1.74 6.18 -39.42 -0.24 1.50 16 28 F -0.13 -1.70 13.17 2.25 0.03 -1.67 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.42 5.18 -51.93 -0.27 0.15 16 31 H 0.05 0.33 6.69 -51.93 -0.35 -0.02 16 32 H 0.07 0.59 6.61 -51.93 -0.34 0.24 16 33 H 0.09 0.89 5.93 -51.93 -0.31 0.58 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.41 5.07 8.04 -40.82 -0.33 4.74 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.62 7.75 -51.93 -0.40 0.22 16 43 H 0.36 8.42 5.53 -40.82 -0.23 8.20 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.14 1.42 5.70 -52.48 -0.30 1.12 16 46 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 47 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -35.20 384.49 -7.42 -42.63 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.16 Total: 10.27 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.35 Total: -3.64 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.21 Total: -57.50 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.24 Total: -13.50 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.20 -7.42 -42.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568639260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.523 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds