Wall clock time and date at job start Tue Mar 31 2020 20:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00190 * 2 1 4 4 C 1.53010 * 109.46816 * 305.90420 * 3 2 1 5 5 C 1.50699 * 109.47527 * 185.90827 * 3 2 1 6 6 O 1.21272 * 120.00248 * 214.99835 * 5 3 2 7 7 N 1.34780 * 119.99746 * 34.99391 * 5 3 2 8 8 C 1.46499 * 120.00241 * 180.02562 * 7 5 3 9 9 H 1.09005 * 109.46917 * 34.99913 * 8 7 5 10 10 C 1.53003 * 109.47246 * 275.00292 * 8 7 5 11 11 C 1.53002 * 109.47603 * 154.99653 * 8 7 5 12 12 C 1.53002 * 109.47049 * 295.00400 * 11 8 7 13 13 N 1.46502 * 109.46649 * 179.97438 * 12 11 8 14 14 C 1.36931 * 119.99632 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00334 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31621 * 119.99827 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99921 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46914 * 90.00196 * 18 16 14 20 20 H 1.48496 * 109.47424 * 210.00156 * 18 16 14 21 21 H 1.48504 * 109.47366 * 330.00527 * 18 16 14 22 22 C 1.50696 * 109.47536 * 65.90359 * 3 2 1 23 23 C 1.38216 * 120.01403 * 5.38619 * 22 3 2 24 24 C 1.38219 * 120.02843 * 179.97438 * 23 22 3 25 25 C 1.38270 * 120.05286 * 0.02871 * 24 23 22 26 26 C 1.38178 * 120.01990 * 359.97438 * 25 24 23 27 27 C 1.38441 * 120.01171 * 185.11247 * 22 3 2 28 28 F 1.35095 * 120.02921 * 359.97438 * 27 22 3 29 29 H 1.08992 * 109.47374 * 185.89903 * 1 2 3 30 30 H 1.09001 * 109.46955 * 305.90428 * 1 2 3 31 31 H 1.09007 * 109.46863 * 65.90294 * 1 2 3 32 32 H 1.08997 * 109.46643 * 60.00011 * 4 3 2 33 33 H 1.08999 * 109.46913 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47095 * 299.99996 * 4 3 2 35 35 H 0.97000 * 120.00297 * 359.97438 * 7 5 3 36 36 H 1.08997 * 109.46728 * 299.99398 * 10 8 7 37 37 H 1.08999 * 109.46681 * 59.99401 * 10 8 7 38 38 H 1.08999 * 109.46943 * 179.97438 * 10 8 7 39 39 H 1.09002 * 109.46666 * 55.00150 * 11 8 7 40 40 H 1.09004 * 109.47031 * 175.00037 * 11 8 7 41 41 H 1.08994 * 109.47019 * 299.99672 * 12 11 8 42 42 H 1.09000 * 109.47194 * 59.99518 * 12 11 8 43 43 H 0.97000 * 120.00513 * 0.02562 * 13 12 11 44 44 H 0.97002 * 119.99569 * 179.97438 * 17 16 14 45 45 H 1.08004 * 119.98459 * 359.96005 * 23 22 3 46 46 H 1.08004 * 119.97203 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.98819 * 179.97438 * 25 24 23 48 48 H 1.08003 * 120.00996 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4448 2.1154 -1.1685 5 6 3.5056 1.1896 -0.1462 6 8 4.2333 1.9747 0.4236 7 7 4.0343 0.2132 -0.9103 8 6 5.4880 0.1002 -1.0521 9 1 5.9675 0.3817 -0.1146 10 6 5.9655 1.0309 -2.1687 11 6 5.8559 -1.3438 -1.3994 12 6 5.4910 -2.2588 -0.2287 13 7 5.8427 -3.6414 -0.5616 14 6 5.6069 -4.6440 0.3407 15 1 5.1613 -4.4156 1.2977 16 6 5.9407 -5.9541 0.0256 17 7 5.7135 -6.9178 0.8928 18 14 6.7108 -6.3493 -1.6297 19 1 8.1891 -6.2610 -1.5215 20 1 6.3257 -7.7238 -2.0393 21 1 6.2298 -5.3774 -2.6442 22 6 1.6847 2.0004 1.2969 23 6 1.0239 1.3172 2.3005 24 6 0.7257 1.9542 3.4903 25 6 1.0873 3.2755 3.6781 26 6 1.7479 3.9604 2.6762 27 6 2.0524 3.3216 1.4859 28 9 2.7037 3.9886 0.5081 29 1 -0.3634 -1.0221 0.1056 30 1 -0.3633 0.6027 0.8324 31 1 -0.3633 0.4196 -0.9382 32 1 0.3632 2.1992 -1.0627 33 1 1.8885 3.1110 -1.1688 34 1 1.6803 1.6128 -2.1067 35 1 3.4523 -0.4151 -1.3658 36 1 5.4861 0.7493 -3.1062 37 1 5.7034 2.0595 -1.9212 38 1 7.0472 0.9470 -2.2739 39 1 5.3071 -1.6547 -2.2884 40 1 6.9268 -1.4096 -1.5920 41 1 6.0398 -1.9478 0.6602 42 1 4.4202 -2.1928 -0.0361 43 1 6.2433 -3.8466 -1.4209 44 1 5.9464 -7.8333 0.6724 45 1 0.7403 0.2853 2.1547 46 1 0.2097 1.4194 4.2741 47 1 0.8534 3.7722 4.6080 48 1 2.0300 4.9926 2.8229 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568639260.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:43 Heat of formation + Delta-G solvation = -102.224380 kcal Electronic energy + Delta-G solvation = -30558.464009 eV Core-core repulsion = 26334.920143 eV Total energy + Delta-G solvation = -4223.543867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.90075 -41.80172 -40.06251 -38.68325 -37.93989 -36.22038 -33.80527 -33.58483 -32.34879 -31.66263 -30.36464 -29.74244 -28.30778 -25.78617 -25.11317 -23.81733 -23.67460 -23.01454 -21.83505 -21.18115 -19.74878 -19.00908 -18.75029 -17.82211 -17.23622 -17.02952 -16.66647 -16.60573 -16.49928 -16.04214 -15.87399 -15.76861 -15.51735 -15.28769 -14.99039 -14.79609 -14.42498 -14.32174 -14.14117 -13.92496 -13.70220 -13.54300 -13.32995 -13.27758 -12.97729 -12.95774 -12.95323 -12.56905 -12.48517 -12.42482 -12.18921 -12.00491 -11.88167 -11.81129 -11.74903 -11.00621 -10.95033 -10.84521 -10.12077 -9.93739 -9.63200 -9.31755 -8.03232 -5.38068 0.09986 0.21690 1.38522 1.39801 1.43587 1.50956 2.08904 2.49070 2.57758 2.62416 3.27014 3.27798 3.36172 3.42725 3.63372 3.77491 3.86012 4.00044 4.08048 4.10672 4.24608 4.34385 4.35149 4.47239 4.50732 4.51180 4.52303 4.59164 4.61704 4.74300 4.80590 4.83318 4.87263 4.97329 5.00288 5.08376 5.13788 5.18408 5.22929 5.30139 5.30589 5.42175 5.52589 5.73732 5.90673 5.92056 6.20211 6.48543 7.06959 7.13390 7.81165 8.03591 9.18510 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002991 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.777501 B = 9359.178920 C =10190.844473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.379 6.379 3 C 0.148 3.852 4 C -0.176 4.176 5 C 0.529 3.471 6 O -0.558 6.558 7 N -0.700 5.700 8 C 0.147 3.853 9 H 0.066 0.934 10 C -0.151 4.151 11 C -0.122 4.122 12 C 0.157 3.843 13 N -0.756 5.756 14 C -0.241 4.241 15 H 0.048 0.952 16 C -0.065 4.065 17 N -0.985 5.985 18 Si 0.963 3.037 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.245 1.245 22 C -0.160 4.160 23 C -0.091 4.091 24 C -0.135 4.135 25 C -0.081 4.081 26 C -0.169 4.169 27 C 0.112 3.888 28 F -0.140 7.140 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.008 0.992 42 H 0.023 0.977 43 H 0.369 0.631 44 H 0.259 0.741 45 H 0.145 0.855 46 H 0.157 0.843 47 H 0.165 0.835 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 24.765 -4.057 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.298 6.298 3 C 0.105 3.895 4 C -0.233 4.233 5 C 0.314 3.686 6 O -0.437 6.437 7 N -0.351 5.351 8 C 0.043 3.957 9 H 0.084 0.916 10 C -0.209 4.209 11 C -0.160 4.160 12 C 0.031 3.969 13 N -0.402 5.402 14 C -0.372 4.372 15 H 0.066 0.934 16 C -0.257 4.257 17 N -0.635 5.635 18 Si 0.789 3.211 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.169 1.169 22 C -0.162 4.162 23 C -0.109 4.109 24 C -0.153 4.153 25 C -0.098 4.098 26 C -0.188 4.188 27 C 0.093 3.907 28 F -0.119 7.119 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.026 0.974 42 H 0.041 0.959 43 H 0.203 0.797 44 H 0.068 0.932 45 H 0.162 0.838 46 H 0.175 0.825 47 H 0.183 0.817 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.250 25.094 -3.515 28.594 hybrid contribution 0.290 -0.762 -0.752 1.109 sum -12.960 24.332 -4.268 27.897 Atomic orbital electron populations 1.23337 0.78759 1.04580 1.02271 1.88028 1.22490 1.24373 1.94940 1.20235 0.90167 0.85293 0.93836 1.22489 1.03268 1.00955 0.96610 1.20193 0.89399 0.80858 0.78137 1.90712 1.61462 1.43246 1.48264 1.46021 1.08126 1.31456 1.49490 1.20919 0.79992 0.95063 0.99766 0.91586 1.22071 1.02511 0.98397 0.97915 1.21970 1.03477 0.92231 0.98317 1.20714 0.97195 0.82925 0.96104 1.42654 1.76289 1.03629 1.17650 1.19010 1.33439 0.87788 0.96938 0.93387 1.25604 1.02421 0.95193 1.02441 1.69909 1.55457 1.00388 1.37774 0.85303 0.78435 0.77367 0.80023 1.20375 1.22117 1.16941 1.20107 1.04464 0.93555 0.98052 1.21273 0.96567 1.00639 0.92441 1.21566 1.00947 0.95456 0.97324 1.21461 0.95067 0.94332 0.98974 1.21447 1.02575 1.02307 0.92463 1.17671 0.95322 0.90328 0.87399 1.91430 1.79011 1.80228 1.61186 0.87795 0.91888 0.91732 0.88836 0.90639 0.89561 0.75051 0.90790 0.93398 0.90103 0.89532 0.88945 0.97400 0.95917 0.79744 0.93236 0.83778 0.82509 0.81717 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.18 113.37 1.04 1.13 16 2 O -0.38 -8.69 8.93 -148.98 -1.33 -10.02 16 3 C 0.15 3.55 0.79 -12.28 -0.01 3.54 16 4 C -0.18 -3.27 7.77 71.99 0.56 -2.71 16 5 C 0.53 15.68 6.58 87.66 0.58 16.25 16 6 O -0.56 -20.07 13.80 -3.01 -0.04 -20.12 16 7 N -0.70 -18.59 4.44 -442.53 -1.97 -20.56 16 8 C 0.15 3.91 2.57 44.99 0.12 4.03 16 9 H 0.07 2.09 7.58 -2.38 -0.02 2.07 16 10 C -0.15 -3.20 9.48 71.98 0.68 -2.51 16 11 C -0.12 -3.41 4.87 30.60 0.15 -3.26 16 12 C 0.16 6.21 6.15 86.38 0.53 6.74 16 13 N -0.76 -36.09 5.41 -343.45 -1.86 -37.95 16 14 C -0.24 -14.24 10.47 84.04 0.88 -13.36 16 15 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 16 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 17 N -0.99 -64.17 13.97 21.65 0.30 -63.87 16 18 Si 0.96 45.35 27.73 68.60 1.90 47.26 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 21 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 22 C -0.16 -3.90 4.30 -19.82 -0.09 -3.99 16 23 C -0.09 -1.90 7.66 22.26 0.17 -1.73 16 24 C -0.14 -2.19 10.04 22.27 0.22 -1.97 16 25 C -0.08 -1.22 10.04 22.26 0.22 -0.99 16 26 C -0.17 -3.28 10.03 22.31 0.22 -3.05 16 27 C 0.11 2.81 6.18 22.38 0.14 2.94 16 28 F -0.14 -3.93 13.17 44.97 0.59 -3.33 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 0.87 5.18 -2.39 -0.01 0.86 16 31 H 0.06 0.77 6.69 -2.38 -0.02 0.75 16 32 H 0.09 1.35 6.61 -2.39 -0.02 1.33 16 33 H 0.07 1.58 5.93 -2.39 -0.01 1.57 16 34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.41 9.94 8.04 -92.71 -0.75 9.19 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.02 0.94 7.75 -2.39 -0.02 0.92 16 43 H 0.37 16.24 5.53 -92.71 -0.51 15.73 16 44 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 45 H 0.14 2.84 5.70 -2.91 -0.02 2.82 16 46 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 47 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -78.76 384.49 3.16 -75.60 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.33 Total: 35.40 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.89 Total: -2.40 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -3.52 Total: -122.37 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.37 Total: -30.14 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.59 Total: -3.33 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.26 kcal Total: -78.76 3.16 -75.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568639260.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.629 kcal (2) G-P(sol) polarization free energy of solvation -78.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds