Wall clock time and date at job start Tue Mar 31 2020 21:40:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36936 * 120.00200 * 2 1
4 4 H 1.08001 * 119.99757 * 202.34038 * 3 2 1
5 5 C 1.38810 * 119.99998 * 22.34553 * 3 2 1
6 6 N 1.31614 * 119.99915 * 11.34935 * 5 3 2
7 7 Si 1.86806 * 119.99852 * 191.34377 * 5 3 2
8 8 H 1.48499 * 109.46718 * 60.00148 * 7 5 3
9 9 H 1.48495 * 109.46810 * 180.02562 * 7 5 3
10 10 H 1.48500 * 109.46983 * 300.00105 * 7 5 3
11 11 C 1.46499 * 119.99786 * 179.97438 * 2 1 3
12 12 C 1.53004 * 109.47155 * 270.00417 * 11 2 1
13 13 C 1.53007 * 109.46943 * 179.97438 * 12 11 2
14 14 N 1.46502 * 109.46592 * 179.97438 * 13 12 11
15 15 C 1.46497 * 120.00264 * 269.99795 * 14 13 12
16 16 C 1.34776 * 119.99535 * 90.00422 * 14 13 12
17 17 O 1.21279 * 120.00436 * 359.97438 * 16 14 13
18 18 C 1.50703 * 119.99433 * 179.97438 * 16 14 13
19 19 C 1.53001 * 109.46868 * 179.97438 * 18 16 14
20 20 O 1.42901 * 109.47152 * 180.02562 * 19 18 16
21 21 C 1.35964 * 116.99966 * 180.02562 * 20 19 18
22 22 C 1.38658 * 120.06177 * 359.97299 * 21 20 19
23 23 C 1.38182 * 119.96842 * 180.02562 * 22 21 20
24 24 C 1.38256 * 120.09361 * 0.02562 * 23 22 21
25 25 C 1.38260 * 120.12898 * 359.97438 * 24 23 22
26 26 C 1.38330 * 120.02564 * 0.02562 * 25 24 23
27 27 F 1.35101 * 120.04458 * 180.02562 * 26 25 24
28 28 H 1.08992 * 109.47220 * 274.21187 * 1 2 3
29 29 H 1.09007 * 109.46675 * 34.21288 * 1 2 3
30 30 H 1.08994 * 109.47191 * 154.20311 * 1 2 3
31 31 H 0.97006 * 119.99835 * 180.02562 * 6 5 3
32 32 H 1.08998 * 109.47519 * 149.99733 * 11 2 1
33 33 H 1.09001 * 109.47412 * 30.00249 * 11 2 1
34 34 H 1.08990 * 109.47057 * 59.99791 * 12 11 2
35 35 H 1.09004 * 109.46795 * 299.99417 * 12 11 2
36 36 H 1.09003 * 109.46995 * 59.99871 * 13 12 11
37 37 H 1.08996 * 109.47157 * 299.99677 * 13 12 11
38 38 H 1.08998 * 109.47161 * 270.00754 * 15 14 13
39 39 H 1.09007 * 109.46894 * 30.00060 * 15 14 13
40 40 H 1.08996 * 109.47362 * 150.00528 * 15 14 13
41 41 H 1.08993 * 109.47318 * 59.99692 * 18 16 14
42 42 H 1.09002 * 109.47043 * 299.99507 * 18 16 14
43 43 H 1.09005 * 109.47734 * 59.99824 * 19 18 16
44 44 H 1.09007 * 109.47307 * 299.99749 * 19 18 16
45 45 H 1.07997 * 120.01584 * 0.04745 * 22 21 20
46 46 H 1.07996 * 119.95312 * 180.27536 * 23 22 21
47 47 H 1.08002 * 119.93489 * 179.97438 * 24 23 22
48 48 H 1.07994 * 119.98509 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1690 1.2209 -0.3555
5 6 1.5339 2.3429 0.4570
6 7 0.3843 2.2690 1.0936
7 14 2.3369 4.0047 0.1687
8 1 2.4918 4.2331 -1.2904
9 1 1.4853 5.0734 0.7499
10 1 3.6722 4.0285 0.8180
11 6 2.1975 -1.2687 0.0006
12 6 2.4524 -1.7099 1.4433
13 6 3.2168 -3.0353 1.4438
14 7 3.4614 -3.4573 2.8253
15 6 4.6827 -3.0345 3.5151
16 6 2.5628 -4.2346 3.4615
17 8 1.5515 -4.5843 2.8906
18 6 2.8146 -4.6691 4.8823
19 6 1.6499 -5.5361 5.3645
20 8 1.8883 -5.9477 6.7120
21 6 0.9419 -6.7308 7.2949
22 6 -0.1922 -7.0945 6.5850
23 6 -1.1531 -7.8899 7.1795
24 6 -0.9856 -8.3233 8.4817
25 6 0.1437 -7.9630 9.1932
26 6 1.1089 -7.1669 8.6031
27 9 2.2129 -6.8150 9.2978
28 1 -0.3633 0.0755 1.0248
29 1 -0.3633 0.8499 -0.5779
30 1 -0.3633 -0.9252 -0.4472
31 1 -0.0462 3.0777 1.4127
32 1 3.1499 -1.1388 -0.5133
33 1 1.6084 -2.0286 -0.5130
34 1 1.5000 -1.8399 1.9571
35 1 3.0416 -0.9500 1.9568
36 1 4.1692 -2.9056 0.9298
37 1 2.6273 -3.7949 0.9305
38 1 5.4695 -3.7691 3.3439
39 1 5.0005 -2.0654 3.1301
40 1 4.4868 -2.9542 4.5843
41 1 2.9016 -3.7903 5.5211
42 1 3.7394 -5.2444 4.9278
43 1 1.5623 -6.4151 4.7258
44 1 0.7253 -4.9606 5.3191
45 1 -0.3244 -6.7566 5.5678
46 1 -2.0342 -8.1768 6.6249
47 1 -1.7385 -8.9446 8.9440
48 1 0.2724 -8.3032 10.2100
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570216717.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:40:54
Heat of formation + Delta-G solvation = -88.899955 kcal
Electronic energy + Delta-G solvation = -28412.793882 eV
Core-core repulsion = 24189.827806 eV
Total energy + Delta-G solvation = -4222.966077 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-49.84971 -41.34809 -40.74929 -38.53071 -37.94024 -36.73738 -34.26358 -33.28191
-31.86838 -31.68840 -30.50318 -28.16766 -27.83071 -27.19429 -25.55161 -23.90157
-23.48834 -22.80508 -21.93723 -20.23104 -19.51537 -18.77243 -18.38512 -17.75968
-17.69957 -17.54414 -17.18763 -16.75903 -16.60841 -16.09513 -15.96757 -15.72608
-15.43195 -15.35559 -14.97324 -14.78695 -14.68260 -14.23816 -14.17183 -13.86685
-13.70555 -13.34062 -13.21530 -13.12735 -12.95525 -12.86919 -12.69826 -12.59920
-12.51431 -12.45227 -12.26539 -12.07314 -12.05427 -11.90317 -11.87621 -11.40982
-10.98606 -10.64440 -9.97735 -9.72468 -9.27477 -8.79527 -7.82668 -5.31333
0.09683 0.22931 1.45654 1.48318 1.50768 1.55426 1.62236 2.29986
2.51293 2.57645 3.19136 3.31486 3.47051 3.65778 3.69777 3.81716
3.82343 3.94847 4.09817 4.16225 4.25417 4.30054 4.33735 4.38247
4.48527 4.55273 4.58835 4.60893 4.68394 4.73964 4.79012 4.84332
4.90171 4.94978 4.95929 5.07242 5.23605 5.25581 5.27660 5.41155
5.41904 5.56344 5.63278 5.66193 5.68502 6.18399 6.32692 6.34208
7.06691 7.14048 7.86483 8.31967 9.21585
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.016095 B = 0.001893 C = 0.001858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1739.242905 B =14785.549170 C =15069.854187
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.179 3.821
2 N -0.622 5.622
3 C -0.259 4.259
4 H 0.077 0.923
5 C -0.061 4.061
6 N -0.944 5.944
7 Si 0.973 3.027
8 H -0.277 1.277
9 H -0.298 1.298
10 H -0.272 1.272
11 C 0.151 3.849
12 C -0.131 4.131
13 C 0.125 3.875
14 N -0.613 5.613
15 C 0.068 3.932
16 C 0.511 3.489
17 O -0.584 6.584
18 C -0.129 4.129
19 C 0.078 3.922
20 O -0.323 6.323
21 C 0.077 3.923
22 C -0.192 4.192
23 C -0.087 4.087
24 C -0.124 4.124
25 C -0.115 4.115
26 C 0.037 3.963
27 F -0.148 7.148
28 H -0.004 1.004
29 H 0.020 0.980
30 H 0.025 0.975
31 H 0.246 0.754
32 H 0.061 0.939
33 H 0.051 0.949
34 H 0.020 0.980
35 H 0.044 0.956
36 H 0.105 0.895
37 H 0.072 0.928
38 H 0.085 0.915
39 H 0.075 0.925
40 H 0.087 0.913
41 H 0.117 0.883
42 H 0.131 0.869
43 H 0.074 0.926
44 H 0.061 0.939
45 H 0.141 0.859
46 H 0.158 0.842
47 H 0.168 0.832
48 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.618 -23.568 14.029 27.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 N -0.345 5.345
3 C -0.389 4.389
4 H 0.095 0.905
5 C -0.255 4.255
6 N -0.591 5.591
7 Si 0.801 3.199
8 H -0.203 1.203
9 H -0.224 1.224
10 H -0.198 1.198
11 C 0.025 3.975
12 C -0.172 4.172
13 C 0.002 3.998
14 N -0.344 5.344
15 C -0.074 4.074
16 C 0.300 3.700
17 O -0.464 6.464
18 C -0.168 4.168
19 C 0.003 3.997
20 O -0.237 6.237
21 C 0.031 3.969
22 C -0.211 4.211
23 C -0.105 4.105
24 C -0.141 4.141
25 C -0.134 4.134
26 C 0.018 3.982
27 F -0.127 7.127
28 H 0.014 0.986
29 H 0.038 0.962
30 H 0.043 0.957
31 H 0.055 0.945
32 H 0.079 0.921
33 H 0.069 0.931
34 H 0.038 0.962
35 H 0.062 0.938
36 H 0.123 0.877
37 H 0.090 0.910
38 H 0.104 0.896
39 H 0.094 0.906
40 H 0.105 0.895
41 H 0.135 0.865
42 H 0.149 0.851
43 H 0.092 0.908
44 H 0.080 0.920
45 H 0.158 0.842
46 H 0.176 0.824
47 H 0.186 0.814
48 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 4.260 -23.519 13.861 27.630
hybrid contribution 0.091 1.529 -0.055 1.532
sum 4.351 -21.990 13.806 26.327
Atomic orbital electron populations
1.20496 0.83221 0.95748 0.97126 1.44249 1.02035 1.02106 1.86093
1.19563 0.98248 0.86403 1.34707 0.90525 1.25891 0.98541 1.02200
0.98894 1.70265 1.19479 1.27445 1.41938 0.85254 0.77660 0.79112
0.77897 1.20305 1.22396 1.19765 1.20934 0.96157 0.86523 0.93885
1.22308 0.98429 0.96436 1.00017 1.21458 1.01301 0.95030 0.81993
1.48005 1.22132 1.49568 1.14700 1.22133 0.85291 1.01689 0.98286
1.20737 0.82512 0.77984 0.88738 1.90700 1.28572 1.58008 1.69164
1.21447 1.00831 1.02381 0.92175 1.22440 0.98701 0.98857 0.79703
1.85989 1.43837 1.64410 1.29489 1.19277 0.90755 0.94643 0.92240
1.21470 0.94455 1.03488 1.01701 1.21460 0.98656 0.94834 0.95557
1.21385 0.97632 1.00909 0.94215 1.21382 0.92964 0.96880 1.02128
1.17417 0.87478 1.04606 0.88742 1.91455 1.51530 1.91049 1.78620
0.98586 0.96163 0.95700 0.94450 0.92070 0.93059 0.96150 0.93761
0.87719 0.90954 0.89639 0.90598 0.89485 0.86499 0.85104 0.90785
0.92021 0.84171 0.82399 0.81409 0.81836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.50 9.01 127.77 1.15 10.65 16
2 N -0.62 -32.33 2.93 -726.94 -2.13 -34.45 16
3 C -0.26 -14.36 9.67 84.03 0.81 -13.54 16
4 H 0.08 4.02 7.84 -2.91 -0.02 3.99 16
5 C -0.06 -3.48 5.13 84.86 0.44 -3.05 16
6 N -0.94 -57.69 10.59 21.65 0.23 -57.46 16
7 Si 0.97 45.43 29.57 68.60 2.03 47.46 16
8 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
9 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16
10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
11 C 0.15 6.16 5.71 86.38 0.49 6.65 16
12 C -0.13 -4.95 5.86 30.60 0.18 -4.77 16
13 C 0.13 3.49 5.41 86.38 0.47 3.96 16
14 N -0.61 -15.03 2.87 -846.75 -2.43 -17.46 16
15 C 0.07 1.08 10.24 127.77 1.31 2.38 16
16 C 0.51 13.79 7.67 87.66 0.67 14.46 16
17 O -0.58 -20.63 15.56 -3.03 -0.05 -20.67 16
18 C -0.13 -2.50 4.62 29.85 0.14 -2.36 16
19 C 0.08 1.73 4.03 71.98 0.29 2.02 16
20 O -0.32 -7.75 10.00 -93.14 -0.93 -8.68 16
21 C 0.08 1.73 6.69 22.53 0.15 1.88 16
22 C -0.19 -3.59 9.04 22.36 0.20 -3.38 16
23 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16
24 C -0.12 -1.36 10.04 22.28 0.22 -1.14 16
25 C -0.12 -1.65 10.02 22.30 0.22 -1.43 16
26 C 0.04 0.79 7.31 22.45 0.16 0.96 16
27 F -0.15 -3.60 17.11 44.97 0.77 -2.83 16
28 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16
29 H 0.02 1.12 7.19 -2.38 -0.02 1.11 16
30 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16
31 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16
32 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16
33 H 0.05 1.94 7.86 -2.39 -0.02 1.92 16
34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16
35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.10 2.30 8.07 -2.39 -0.02 2.28 16
37 H 0.07 2.16 7.42 -2.39 -0.02 2.14 16
38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
39 H 0.08 1.28 8.07 -2.38 -0.02 1.26 16
40 H 0.09 1.12 6.44 -2.39 -0.02 1.11 16
41 H 0.12 2.04 7.40 -2.39 -0.02 2.02 16
42 H 0.13 1.83 8.11 -2.39 -0.02 1.81 16
43 H 0.07 1.59 7.62 -2.38 -0.02 1.57 16
44 H 0.06 1.50 7.62 -2.38 -0.02 1.48 16
45 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16
46 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16
47 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16
48 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16
Total: -1.00 -76.70 400.61 5.57 -71.13
By element:
Atomic # 1 Polarization: 9.66 SS G_CDS: 0.94 Total: 10.60 kcal
Atomic # 6 Polarization: 5.23 SS G_CDS: 7.14 Total: 12.37 kcal
Atomic # 7 Polarization: -105.05 SS G_CDS: -4.33 Total: -109.38 kcal
Atomic # 8 Polarization: -28.38 SS G_CDS: -0.98 Total: -29.36 kcal
Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal
Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal
Total: -76.70 5.57 -71.13 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570216717.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.767 kcal
(2) G-P(sol) polarization free energy of solvation -76.701 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds