Wall clock time and date at job start Tue Mar 31 2020 21:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.52995 * 109.46905 * 120.00561 * 2 1 3 5 5 N 1.46500 * 109.46881 * 175.00262 * 4 2 1 6 6 C 1.46505 * 119.99415 * 269.99244 * 5 4 2 7 7 C 1.34770 * 120.00415 * 90.00221 * 5 4 2 8 8 O 1.21278 * 120.00159 * 359.97438 * 7 5 4 9 9 C 1.50708 * 120.00281 * 180.02562 * 7 5 4 10 10 O 1.42898 * 109.47215 * 179.97438 * 9 7 5 11 11 C 1.42899 * 113.99817 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46993 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47106 * 179.97438 * 12 11 10 14 14 C 1.38271 * 119.98983 * 270.25730 * 13 12 11 15 15 C 1.38219 * 120.05279 * 180.25774 * 14 13 12 16 16 C 1.38227 * 120.02402 * 359.48356 * 15 14 13 17 17 C 1.38435 * 119.97416 * 0.26250 * 16 15 14 18 18 F 1.35097 * 120.02437 * 179.97438 * 17 16 15 19 19 C 1.38179 * 119.98470 * 90.00228 * 13 12 11 20 20 N 1.46500 * 109.47095 * 240.00274 * 2 1 3 21 21 C 1.36945 * 120.00082 * 84.99936 * 20 2 1 22 22 H 1.07999 * 119.99711 * 359.97438 * 21 20 2 23 23 C 1.38806 * 119.99743 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00343 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99588 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47318 * 60.00229 * 25 23 21 27 27 H 1.48500 * 109.46996 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47040 * 299.99764 * 25 23 21 29 29 H 1.08997 * 109.47416 * 299.99889 * 1 2 3 30 30 H 1.09000 * 109.47177 * 59.99528 * 1 2 3 31 31 H 1.08996 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47637 * 54.99751 * 4 2 1 33 33 H 1.09005 * 109.46704 * 294.99462 * 4 2 1 34 34 H 1.08997 * 109.47637 * 269.99827 * 6 5 4 35 35 H 1.09000 * 109.47115 * 30.00885 * 6 5 4 36 36 H 1.09007 * 109.46533 * 150.00470 * 6 5 4 37 37 H 1.08999 * 109.46915 * 59.98914 * 9 7 5 38 38 H 1.09001 * 109.46860 * 299.99638 * 9 7 5 39 39 H 1.09000 * 109.46841 * 60.00131 * 11 10 9 40 40 H 1.08994 * 109.47243 * 300.00085 * 11 10 9 41 41 H 1.09007 * 109.46882 * 60.00129 * 12 11 10 42 42 H 1.08994 * 109.47239 * 300.00141 * 12 11 10 43 43 H 1.08000 * 119.97479 * 0.02562 * 14 13 12 44 44 H 1.08002 * 119.99072 * 179.76964 * 15 14 13 45 45 H 1.07999 * 120.01289 * 180.23490 * 16 15 14 46 46 H 1.07994 * 120.01414 * 0.02562 * 19 13 12 47 47 H 0.96996 * 119.99915 * 265.00400 * 20 2 1 48 48 H 0.97004 * 119.99359 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8264 1.1905 6 6 4.1257 -1.9921 0.5611 7 6 4.2675 0.1490 1.7156 8 8 3.7495 1.1141 2.2364 9 6 5.7695 0.0412 1.6547 10 8 6.3549 1.1890 2.2726 11 6 7.7839 1.1857 2.2689 12 6 8.2985 2.4547 2.9514 13 6 9.8055 2.4509 2.9480 14 6 10.4976 1.8770 3.9985 15 6 11.8797 1.8775 3.9994 16 6 12.5718 2.4426 2.9446 17 6 11.8800 3.0129 1.8898 18 9 12.5554 3.5659 0.8587 19 6 10.4952 3.0165 1.8926 20 7 2.0184 -0.6906 -1.1962 21 6 2.1491 -0.0073 -2.3758 22 1 1.8919 1.0404 -2.4243 23 6 2.6113 -0.6618 -3.5093 24 7 2.9234 -1.9392 -3.4505 25 14 2.7904 0.2703 -5.1182 26 1 3.7465 1.3920 -4.9367 27 1 3.2980 -0.6484 -6.1687 28 1 1.4684 0.8081 -5.5284 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 4.2822 -2.7689 1.3095 35 1 3.4756 -2.3722 -0.2269 36 1 5.0851 -1.7021 0.1324 37 1 6.0879 -0.0130 0.6137 38 1 6.0907 -0.8582 2.1801 39 1 8.1444 1.1548 1.2407 40 1 8.1466 0.3104 2.8076 41 1 7.9379 2.4860 3.9796 42 1 7.9358 3.3298 2.4123 43 1 9.9577 1.4311 4.8208 44 1 12.4193 1.4322 4.8222 45 1 13.6518 2.4396 2.9437 46 1 9.9545 3.4614 1.0705 47 1 2.2490 -1.6317 -1.1527 48 1 3.2467 -2.3963 -4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571390042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:29 Heat of formation + Delta-G solvation = -87.889487 kcal Electronic energy + Delta-G solvation = -28568.737391 eV Core-core repulsion = 24345.815131 eV Total energy + Delta-G solvation = -4222.922259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.19471 -39.78173 -39.51923 -37.70467 -36.17541 -34.21826 -33.73363 -32.09256 -30.95469 -29.63052 -28.87079 -27.76783 -26.67708 -24.92942 -23.87192 -23.46052 -23.08192 -21.48954 -20.27530 -18.94538 -17.65303 -17.31111 -17.07742 -16.86912 -16.53570 -16.34815 -16.21733 -15.90449 -15.47291 -15.07480 -14.61739 -14.35553 -14.28765 -13.85817 -13.70442 -13.49560 -13.38965 -13.05056 -12.85865 -12.44822 -12.38392 -12.25827 -12.13514 -12.09415 -11.78485 -11.51152 -11.45534 -11.34637 -11.33110 -11.25062 -10.84160 -10.70584 -10.37393 -10.09366 -9.75042 -9.65286 -9.39753 -9.32850 -9.04209 -8.92993 -8.16753 -6.96177 -5.79643 -3.06123 0.75061 0.81263 2.87929 2.99210 3.21665 3.43101 3.47428 3.49035 3.79879 3.97752 4.35122 4.44163 4.58628 4.68350 4.75609 4.79358 4.85967 4.98830 5.04273 5.16605 5.19920 5.26984 5.45212 5.48609 5.49633 5.53455 5.57669 5.63652 5.66694 5.75175 5.79631 5.82726 5.89245 5.91539 6.12950 6.15084 6.27676 6.28300 6.35837 6.51330 6.69784 6.76950 6.87134 7.01779 7.17431 7.69736 7.75555 8.40620 8.53956 9.51558 10.07404 10.43390 11.43359 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.002282 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.211043 B =12268.220500 C =13948.656802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.052 0.948 4 C 0.112 3.888 5 N -0.594 5.594 6 C 0.078 3.922 7 C 0.517 3.483 8 O -0.531 6.531 9 C 0.048 3.952 10 O -0.363 6.363 11 C 0.066 3.934 12 C -0.081 4.081 13 C -0.050 4.050 14 C -0.125 4.125 15 C -0.089 4.089 16 C -0.159 4.159 17 C 0.100 3.900 18 F -0.140 7.140 19 C -0.148 4.148 20 N -0.720 5.720 21 C -0.230 4.230 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.937 5.937 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.381 0.619 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.002 2.386 16.579 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.070 0.930 4 C -0.011 4.011 5 N -0.328 5.328 6 C -0.065 4.065 7 C 0.303 3.697 8 O -0.408 6.408 9 C -0.032 4.032 10 O -0.281 6.281 11 C -0.011 4.011 12 C -0.118 4.118 13 C -0.050 4.050 14 C -0.143 4.143 15 C -0.107 4.107 16 C -0.178 4.178 17 C 0.081 3.919 18 F -0.118 7.118 19 C -0.167 4.167 20 N -0.363 5.363 21 C -0.361 4.361 22 H 0.086 0.914 23 C -0.210 4.210 24 N -0.587 5.587 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.156 0.844 47 H 0.216 0.784 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.662 3.181 16.751 23.151 hybrid contribution 0.549 -0.073 -1.541 1.638 sum 16.210 3.108 15.209 22.445 Atomic orbital electron populations 1.22364 0.98753 1.00828 1.00315 1.20676 0.92004 0.96372 0.86700 0.92990 1.21842 0.78500 1.01213 0.99516 1.47522 1.06733 1.21288 1.57208 1.21930 0.99761 0.87028 0.97759 1.20025 0.88288 0.82730 0.78622 1.90676 1.74707 1.30757 1.44617 1.22259 0.92360 0.89496 0.99071 1.87964 1.18622 1.41787 1.79772 1.22458 0.81220 0.97434 0.99954 1.20486 0.89429 0.98718 1.03185 1.19602 0.95404 0.96443 0.93548 1.21193 0.94220 1.00082 0.98839 1.21021 0.94141 0.97933 0.97652 1.21178 1.00929 1.01381 0.94265 1.17716 0.90153 0.97917 0.86145 1.91514 1.80257 1.83210 1.56843 1.21147 0.92304 1.02879 1.00387 1.42469 1.78217 1.10377 1.05282 1.19200 1.35823 0.93811 0.87283 0.91440 1.24656 1.02475 0.95984 0.97853 1.69616 1.51570 1.08532 1.28938 0.86303 0.77806 0.78620 0.83702 1.21399 1.21765 1.21378 0.94262 0.92571 0.93471 0.90845 0.90107 0.93469 0.88761 0.91473 0.89904 0.90650 0.92831 0.92977 0.89382 0.89413 0.85064 0.84884 0.84801 0.84414 0.78391 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.49 37.16 0.35 -2.59 16 2 C 0.15 3.11 3.20 -67.93 -0.22 2.89 16 3 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 4 C 0.11 1.92 5.05 -4.04 -0.02 1.89 16 5 N -0.59 -9.99 2.73 -181.56 -0.50 -10.48 16 6 C 0.08 1.16 9.86 59.85 0.59 1.75 16 7 C 0.52 9.19 7.75 -10.98 -0.09 9.11 16 8 O -0.53 -11.33 16.08 -14.35 -0.23 -11.56 16 9 C 0.05 0.67 4.97 36.01 0.18 0.85 16 10 O -0.36 -5.33 9.88 -55.14 -0.54 -5.88 16 11 C 0.07 0.70 5.92 37.16 0.22 0.92 16 12 C -0.08 -0.74 5.71 -27.88 -0.16 -0.90 16 13 C -0.05 -0.42 5.13 -104.63 -0.54 -0.96 16 14 C -0.13 -0.90 9.70 -39.58 -0.38 -1.28 16 15 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 16 C -0.16 -1.21 10.03 -39.51 -0.40 -1.61 16 17 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 18 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 19 C -0.15 -1.36 9.68 -39.51 -0.38 -1.75 16 20 N -0.72 -17.20 4.57 -53.43 -0.24 -17.44 16 21 C -0.23 -6.25 9.93 -15.06 -0.15 -6.40 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.94 -26.80 13.06 55.49 0.72 -26.08 16 25 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.11 8.07 -51.93 -0.42 0.70 16 33 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.65 5.62 -51.93 -0.29 1.36 16 36 H 0.07 0.94 6.44 -51.92 -0.33 0.61 16 37 H 0.08 1.12 7.40 -51.93 -0.38 0.74 16 38 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 42 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 47 H 0.38 9.24 5.33 -40.82 -0.22 9.02 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -32.98 403.59 -8.95 -41.93 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.49 Total: 6.57 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.77 Total: 1.10 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.01 Total: -54.00 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.78 Total: -17.44 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.98 -8.95 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571390042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.964 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds