Wall clock time and date at job start Tue Mar 31 2020 21:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.52995 * 109.46905 * 120.00561 * 2 1 3 5 5 N 1.46500 * 109.46881 * 175.00262 * 4 2 1 6 6 C 1.46505 * 119.99415 * 269.99244 * 5 4 2 7 7 C 1.34770 * 120.00415 * 90.00221 * 5 4 2 8 8 O 1.21278 * 120.00159 * 359.97438 * 7 5 4 9 9 C 1.50708 * 120.00281 * 180.02562 * 7 5 4 10 10 O 1.42898 * 109.47215 * 179.97438 * 9 7 5 11 11 C 1.42899 * 113.99817 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46993 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47106 * 179.97438 * 12 11 10 14 14 C 1.38271 * 119.98983 * 270.25730 * 13 12 11 15 15 C 1.38219 * 120.05279 * 180.25774 * 14 13 12 16 16 C 1.38227 * 120.02402 * 359.48356 * 15 14 13 17 17 C 1.38435 * 119.97416 * 0.26250 * 16 15 14 18 18 F 1.35097 * 120.02437 * 179.97438 * 17 16 15 19 19 C 1.38179 * 119.98470 * 90.00228 * 13 12 11 20 20 N 1.46500 * 109.47095 * 240.00274 * 2 1 3 21 21 C 1.36945 * 120.00082 * 84.99936 * 20 2 1 22 22 H 1.07999 * 119.99711 * 359.97438 * 21 20 2 23 23 C 1.38806 * 119.99743 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00343 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99588 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47318 * 60.00229 * 25 23 21 27 27 H 1.48500 * 109.46996 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47040 * 299.99764 * 25 23 21 29 29 H 1.08997 * 109.47416 * 299.99889 * 1 2 3 30 30 H 1.09000 * 109.47177 * 59.99528 * 1 2 3 31 31 H 1.08996 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47637 * 54.99751 * 4 2 1 33 33 H 1.09005 * 109.46704 * 294.99462 * 4 2 1 34 34 H 1.08997 * 109.47637 * 269.99827 * 6 5 4 35 35 H 1.09000 * 109.47115 * 30.00885 * 6 5 4 36 36 H 1.09007 * 109.46533 * 150.00470 * 6 5 4 37 37 H 1.08999 * 109.46915 * 59.98914 * 9 7 5 38 38 H 1.09001 * 109.46860 * 299.99638 * 9 7 5 39 39 H 1.09000 * 109.46841 * 60.00131 * 11 10 9 40 40 H 1.08994 * 109.47243 * 300.00085 * 11 10 9 41 41 H 1.09007 * 109.46882 * 60.00129 * 12 11 10 42 42 H 1.08994 * 109.47239 * 300.00141 * 12 11 10 43 43 H 1.08000 * 119.97479 * 0.02562 * 14 13 12 44 44 H 1.08002 * 119.99072 * 179.76964 * 15 14 13 45 45 H 1.07999 * 120.01289 * 180.23490 * 16 15 14 46 46 H 1.07994 * 120.01414 * 0.02562 * 19 13 12 47 47 H 0.96996 * 119.99915 * 265.00400 * 20 2 1 48 48 H 0.97004 * 119.99359 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8264 1.1905 6 6 4.1257 -1.9921 0.5611 7 6 4.2675 0.1490 1.7156 8 8 3.7495 1.1141 2.2364 9 6 5.7695 0.0412 1.6547 10 8 6.3549 1.1890 2.2726 11 6 7.7839 1.1857 2.2689 12 6 8.2985 2.4547 2.9514 13 6 9.8055 2.4509 2.9480 14 6 10.4976 1.8770 3.9985 15 6 11.8797 1.8775 3.9994 16 6 12.5718 2.4426 2.9446 17 6 11.8800 3.0129 1.8898 18 9 12.5554 3.5659 0.8587 19 6 10.4952 3.0165 1.8926 20 7 2.0184 -0.6906 -1.1962 21 6 2.1491 -0.0073 -2.3758 22 1 1.8919 1.0404 -2.4243 23 6 2.6113 -0.6618 -3.5093 24 7 2.9234 -1.9392 -3.4505 25 14 2.7904 0.2703 -5.1182 26 1 3.7465 1.3920 -4.9367 27 1 3.2980 -0.6484 -6.1687 28 1 1.4684 0.8081 -5.5284 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 4.2822 -2.7689 1.3095 35 1 3.4756 -2.3722 -0.2269 36 1 5.0851 -1.7021 0.1324 37 1 6.0879 -0.0130 0.6137 38 1 6.0907 -0.8582 2.1801 39 1 8.1444 1.1548 1.2407 40 1 8.1466 0.3104 2.8076 41 1 7.9379 2.4860 3.9796 42 1 7.9358 3.3298 2.4123 43 1 9.9577 1.4311 4.8208 44 1 12.4193 1.4322 4.8222 45 1 13.6518 2.4396 2.9437 46 1 9.9545 3.4614 1.0705 47 1 2.2490 -1.6317 -1.1527 48 1 3.2467 -2.3963 -4.2426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571390042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:28 Heat of formation + Delta-G solvation = -106.033409 kcal Electronic energy + Delta-G solvation = -28569.524170 eV Core-core repulsion = 24345.815131 eV Total energy + Delta-G solvation = -4223.709039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.93162 -41.02775 -40.23831 -38.77297 -37.73611 -35.81275 -34.46725 -33.95647 -31.56128 -30.93486 -30.25590 -28.88609 -27.93767 -26.38103 -25.37436 -24.58452 -23.68337 -22.18009 -21.86209 -20.31698 -19.27700 -18.40117 -18.24020 -17.67609 -17.53871 -17.18870 -17.10439 -16.84439 -16.63296 -16.50249 -16.14090 -15.69043 -15.31961 -15.19862 -14.89896 -14.49778 -14.18883 -14.12838 -13.99941 -13.75677 -13.66796 -13.57956 -13.26147 -13.15129 -13.07594 -12.79404 -12.73081 -12.70546 -12.50037 -12.28841 -12.23711 -12.21321 -11.97063 -11.86239 -11.61594 -10.99510 -10.73384 -10.71072 -9.96154 -9.66778 -9.56946 -8.94093 -7.92474 -5.17455 0.13934 0.21205 1.46629 1.46806 1.53086 1.57845 1.83104 2.54628 2.56699 2.87029 3.26539 3.41048 3.58775 3.75849 3.82246 3.89284 4.06370 4.07482 4.12826 4.16653 4.23710 4.26537 4.27801 4.34634 4.39785 4.45196 4.45906 4.64221 4.70234 4.74332 4.77537 4.86365 4.89400 4.99302 5.05727 5.11646 5.15691 5.19505 5.26335 5.35805 5.37909 5.52754 5.53280 5.66832 5.92526 6.04496 6.30820 6.45482 7.19188 7.38746 8.11150 8.40831 9.29690 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.002282 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.211043 B =12268.220500 C =13948.656802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.019 0.981 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.080 3.920 7 C 0.506 3.494 8 O -0.576 6.576 9 C 0.053 3.947 10 O -0.392 6.392 11 C 0.063 3.937 12 C -0.076 4.076 13 C -0.056 4.056 14 C -0.122 4.122 15 C -0.084 4.084 16 C -0.159 4.159 17 C 0.074 3.926 18 F -0.153 7.153 19 C -0.163 4.163 20 N -0.723 5.723 21 C -0.235 4.235 22 H 0.057 0.943 23 C -0.062 4.062 24 N -0.958 5.958 25 Si 0.958 3.042 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.151 0.849 46 H 0.131 0.869 47 H 0.379 0.621 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.049 1.110 18.282 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.037 0.963 4 C -0.006 4.006 5 N -0.328 5.328 6 C -0.063 4.063 7 C 0.295 3.705 8 O -0.456 6.456 9 C -0.026 4.026 10 O -0.311 6.311 11 C -0.013 4.013 12 C -0.113 4.113 13 C -0.057 4.057 14 C -0.140 4.140 15 C -0.102 4.102 16 C -0.177 4.177 17 C 0.055 3.945 18 F -0.132 7.132 19 C -0.182 4.182 20 N -0.367 5.367 21 C -0.367 4.367 22 H 0.075 0.925 23 C -0.255 4.255 24 N -0.608 5.608 25 Si 0.789 3.211 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.169 0.831 46 H 0.149 0.851 47 H 0.215 0.785 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.706 1.897 18.463 24.972 hybrid contribution 0.223 0.346 -2.004 2.046 sum 16.929 2.243 16.459 23.718 Atomic orbital electron populations 1.22212 0.96805 1.01584 1.00660 1.20790 0.93354 0.94710 0.87016 0.96328 1.21762 0.79120 1.02089 0.97623 1.47667 1.06678 1.21739 1.56701 1.22014 0.99026 0.87110 0.98120 1.20767 0.90020 0.81992 0.77764 1.90644 1.75820 1.32407 1.46738 1.22267 0.89641 0.90886 0.99810 1.87930 1.20896 1.42422 1.79901 1.22654 0.79188 0.98966 1.00460 1.20422 0.89999 0.97695 1.03194 1.19559 0.94839 0.97235 0.94034 1.21497 0.94756 0.99120 0.98655 1.21398 0.94007 0.96890 0.97883 1.21474 1.01961 1.00540 0.93770 1.17999 0.90397 0.99287 0.86777 1.91473 1.80467 1.83652 1.57603 1.21206 0.92554 1.03608 1.00826 1.42518 1.78453 1.10282 1.05419 1.19377 1.35062 0.93594 0.88682 0.92462 1.25251 1.03098 0.96849 1.00338 1.69725 1.52484 1.09358 1.29253 0.85444 0.77590 0.77487 0.80599 1.21348 1.21736 1.21138 0.91488 0.94652 0.92430 0.88411 0.89666 0.89409 0.91497 0.90909 0.89676 0.86843 0.93008 0.90630 0.88690 0.90778 0.82894 0.81722 0.83112 0.85076 0.78520 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 9.49 71.98 0.68 -4.74 16 2 C 0.15 6.13 3.20 44.99 0.14 6.28 16 3 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 4 C 0.12 3.88 5.05 86.38 0.44 4.31 16 5 N -0.60 -19.36 2.73 -846.74 -2.31 -21.67 16 6 C 0.08 2.20 9.86 127.77 1.26 3.46 16 7 C 0.51 17.72 7.75 87.66 0.68 18.40 16 8 O -0.58 -24.87 16.08 16.01 0.26 -24.61 16 9 C 0.05 1.41 4.97 71.24 0.35 1.77 16 10 O -0.39 -11.24 9.88 -129.94 -1.28 -12.52 16 11 C 0.06 1.26 5.92 71.98 0.43 1.68 16 12 C -0.08 -1.34 5.71 29.85 0.17 -1.17 16 13 C -0.06 -0.90 5.13 -19.87 -0.10 -1.01 16 14 C -0.12 -1.44 9.70 22.27 0.22 -1.23 16 15 C -0.08 -0.85 10.04 22.26 0.22 -0.63 16 16 C -0.16 -2.15 10.03 22.31 0.22 -1.93 16 17 C 0.07 1.40 7.30 22.38 0.16 1.56 16 18 F -0.15 -3.34 17.27 44.97 0.78 -2.57 16 19 C -0.16 -3.04 9.68 22.31 0.22 -2.83 16 20 N -0.72 -34.73 4.57 -322.94 -1.47 -36.21 16 21 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 22 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 23 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 24 N -0.96 -54.82 13.06 21.65 0.28 -54.54 16 25 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 33 H 0.09 2.76 7.42 -2.38 -0.02 2.75 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.27 5.62 -2.39 -0.01 2.26 16 36 H 0.07 1.91 6.44 -2.38 -0.02 1.90 16 37 H 0.09 2.22 7.40 -2.39 -0.02 2.20 16 38 H 0.11 2.12 8.11 -2.39 -0.02 2.10 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.53 8.09 -2.38 -0.02 1.51 16 42 H 0.07 1.48 8.09 -2.39 -0.02 1.47 16 43 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 45 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 47 H 0.38 18.42 5.33 -92.71 -0.49 17.92 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -72.43 403.59 5.13 -67.30 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.46 Total: 28.01 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.40 Total: 8.85 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -3.50 Total: -112.42 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.03 Total: -37.13 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -72.43 5.13 -67.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571390042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.734 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds