Wall clock time and date at job start Tue Mar 31 2020 20:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47240 * 2 1 4 4 C 1.52994 * 109.47434 * 239.99392 * 2 1 3 5 5 C 1.50703 * 109.47165 * 65.00068 * 4 2 1 6 6 O 1.21281 * 119.99837 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00021 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99832 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99786 * 179.97438 * 7 5 4 10 10 C 1.53000 * 109.46840 * 90.00416 * 9 7 5 11 11 H 1.09002 * 109.47069 * 304.99442 * 10 9 7 12 12 O 1.42899 * 109.47405 * 64.99638 * 10 9 7 13 13 C 1.53006 * 109.46846 * 185.00008 * 10 9 7 14 14 N 1.46497 * 109.46795 * 179.97438 * 13 10 9 15 15 C 1.36940 * 119.99811 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00195 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46967 * 60.00291 * 19 17 15 21 21 H 1.48498 * 109.46842 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47240 * 300.00296 * 19 17 15 23 23 C 1.50704 * 109.46984 * 119.99120 * 2 1 3 24 24 C 1.38270 * 119.98397 * 59.72692 * 23 2 1 25 25 C 1.38219 * 120.04950 * 179.72285 * 24 23 2 26 26 C 1.38222 * 120.02687 * 0.55509 * 25 24 23 27 27 C 1.38443 * 119.97135 * 359.71937 * 26 25 24 28 28 F 1.35098 * 120.02121 * 180.02562 * 27 26 25 29 29 C 1.38169 * 119.99103 * 240.00401 * 23 2 1 30 30 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47451 * 300.00810 * 1 2 3 32 32 H 1.09004 * 109.46642 * 60.00795 * 1 2 3 33 33 H 1.09000 * 109.46983 * 305.00238 * 4 2 1 34 34 H 1.08999 * 109.47583 * 184.99877 * 4 2 1 35 35 H 1.09000 * 109.46899 * 269.99516 * 8 7 5 36 36 H 1.08992 * 109.47334 * 29.99480 * 8 7 5 37 37 H 1.08994 * 109.46680 * 150.00103 * 8 7 5 38 38 H 1.09002 * 109.47391 * 330.00086 * 9 7 5 39 39 H 1.09001 * 109.46813 * 210.00142 * 9 7 5 40 40 H 0.96702 * 113.99557 * 60.00388 * 12 10 9 41 41 H 1.09002 * 109.46824 * 299.99583 * 13 10 9 42 42 H 1.09001 * 109.47241 * 59.99481 * 13 10 9 43 43 H 0.96995 * 120.00714 * 0.02562 * 14 13 10 44 44 H 0.96998 * 120.00304 * 180.02562 * 18 17 15 45 45 H 1.08005 * 119.97487 * 359.97438 * 24 23 2 46 46 H 1.08008 * 119.98742 * 180.27783 * 25 24 23 47 47 H 1.07999 * 120.01644 * 179.70165 * 26 25 24 48 48 H 1.08003 * 120.01380 * 0.02562 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0118 1.0872 -2.3633 7 7 1.9855 -0.3917 -3.7001 8 6 2.7466 -1.6361 -3.8367 9 6 1.5975 0.3645 -4.8933 10 6 2.6945 1.3745 -5.2360 11 1 2.8931 2.0036 -4.3683 12 8 3.8869 0.6770 -5.6016 13 6 2.2359 2.2483 -6.4052 14 7 3.2860 3.2158 -6.7330 15 6 3.0995 4.1091 -7.7540 16 1 2.1781 4.1008 -8.3173 17 6 4.0943 5.0262 -8.0642 18 7 5.2170 5.0368 -7.3774 19 14 3.8395 6.2453 -9.4565 20 1 2.6525 7.0886 -9.1649 21 1 5.0411 7.1085 -9.5846 22 1 3.6227 5.5077 -10.7269 23 6 2.0323 -0.7102 1.2306 24 6 1.6934 -2.0323 1.4521 25 6 2.1581 -2.6867 2.5774 26 6 2.9527 -2.0167 3.4885 27 6 3.2880 -0.6913 3.2706 28 9 4.0651 -0.0356 4.1602 29 6 2.8266 -0.0384 2.1399 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.6054 -1.7199 -1.2949 34 1 3.1264 -0.7995 -1.2055 35 1 3.8134 -1.4133 -3.8185 36 1 2.5009 -2.3047 -3.0118 37 1 2.4917 -2.1159 -4.7816 38 1 0.6640 0.8933 -4.7008 39 1 1.4609 -0.3213 -5.7295 40 1 3.7837 0.0967 -6.3682 41 1 2.0373 1.6192 -7.2729 42 1 1.3263 2.7803 -6.1264 43 1 4.1137 3.2232 -6.2274 44 1 5.9120 5.6779 -7.5940 45 1 1.0685 -2.5553 0.7433 46 1 1.8964 -3.7208 2.7472 47 1 3.3117 -2.5268 4.3702 48 1 3.0872 0.9957 1.9692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571589606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:19 Heat of formation + Delta-G solvation = -100.577144 kcal Electronic energy + Delta-G solvation = -28824.185849 eV Core-core repulsion = 24600.713412 eV Total energy + Delta-G solvation = -4223.472437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.18349 -40.46164 -39.44912 -37.55660 -35.44835 -35.04442 -33.97792 -31.43304 -31.14154 -30.31980 -29.51558 -27.99752 -26.77403 -25.22380 -23.97390 -23.14505 -22.68517 -21.20749 -20.73123 -19.10540 -17.80981 -17.14422 -17.02037 -16.75511 -16.49494 -16.36854 -16.06525 -15.87991 -15.32175 -15.17840 -14.56427 -14.43946 -14.22770 -13.98869 -13.79466 -13.54474 -13.31712 -13.06600 -13.01602 -12.91316 -12.65694 -12.49451 -12.38118 -12.23025 -12.04891 -11.91117 -11.53977 -11.40623 -11.14264 -11.02776 -10.91590 -10.78449 -10.64172 -10.19129 -9.95956 -9.73576 -9.58092 -9.32877 -9.00979 -8.86453 -8.50419 -6.89095 -5.71825 -3.01318 0.78483 0.84087 2.57236 2.89830 3.21937 3.46141 3.50033 3.51673 3.86031 4.18938 4.33523 4.53283 4.58748 4.64596 4.69974 4.75018 4.79180 4.82405 4.93602 5.00778 5.07246 5.15743 5.19238 5.29721 5.36143 5.45496 5.49088 5.58271 5.62855 5.66907 5.70059 5.72852 5.78119 5.80963 5.85671 5.93870 6.01703 6.16908 6.23284 6.26955 6.45617 6.53289 6.56505 6.77156 7.29670 7.70779 8.04445 8.13449 8.46415 9.57574 10.15901 10.51703 11.50524 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.002001 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.672968 B =13992.039480 C =14726.343550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 H 0.091 0.909 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.533 6.533 7 N -0.608 5.608 8 C 0.080 3.920 9 C 0.087 3.913 10 C 0.087 3.913 11 H 0.099 0.901 12 O -0.551 6.551 13 C 0.127 3.873 14 N -0.725 5.725 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.044 4.044 24 C -0.126 4.126 25 C -0.089 4.089 26 C -0.161 4.161 27 C 0.100 3.900 28 F -0.140 7.140 29 C -0.149 4.149 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.366 0.634 41 H 0.019 0.981 42 H 0.027 0.973 43 H 0.389 0.611 44 H 0.256 0.744 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -22.258 19.434 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 H 0.110 0.890 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.341 5.341 8 C -0.063 4.063 9 C -0.037 4.037 10 C 0.026 3.974 11 H 0.117 0.883 12 O -0.355 6.355 13 C -0.002 4.002 14 N -0.370 5.370 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.044 4.044 24 C -0.144 4.144 25 C -0.107 4.107 26 C -0.180 4.180 27 C 0.081 3.919 28 F -0.119 7.119 29 C -0.168 4.168 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.212 0.788 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.222 -21.263 19.903 30.263 hybrid contribution 0.215 0.447 -0.945 1.067 sum -8.007 -20.817 18.958 29.272 Atomic orbital electron populations 1.21967 0.93237 1.01722 1.03647 1.19946 0.97041 0.99537 0.89246 0.89035 1.21761 1.03211 0.99917 0.92165 1.20577 0.79282 0.85744 0.84402 1.90700 1.39953 1.24279 1.86082 1.47745 1.55452 1.24869 1.06035 1.21828 0.96921 0.85168 1.02417 1.22248 0.99601 0.95181 0.86644 1.22536 0.84510 0.91862 0.98458 0.88269 1.86613 1.34781 1.62472 1.51586 1.21217 0.93267 0.91887 0.93863 1.42231 1.17145 1.37450 1.40161 1.19178 1.00602 1.09315 1.08323 0.91331 1.24767 0.96467 0.99911 0.99823 1.69671 1.06755 1.38942 1.42475 0.86254 0.76805 0.81076 0.81944 1.21255 1.21666 1.21300 1.19770 0.95254 0.93900 0.95481 1.21085 1.00871 0.94329 0.98155 1.20998 0.96231 0.99983 0.93521 1.21150 1.01793 0.93282 1.01763 1.17721 0.94082 0.91166 0.88911 1.91510 1.72440 1.81108 1.66842 1.21143 1.00292 1.01409 0.93951 0.93087 0.92609 0.89886 0.88820 0.88606 0.91652 0.91490 0.91144 0.88888 0.90284 0.78763 0.96366 0.95570 0.77677 0.93455 0.85346 0.85030 0.84916 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.74 37.16 0.32 -1.02 16 2 C -0.04 -0.35 2.21 -91.77 -0.20 -0.55 16 3 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 4 C -0.13 -1.10 3.47 -27.88 -0.10 -1.20 16 5 C 0.51 6.20 7.39 -10.98 -0.08 6.12 16 6 O -0.53 -8.42 13.55 5.56 0.08 -8.34 16 7 N -0.61 -6.76 2.84 -181.57 -0.52 -7.27 16 8 C 0.08 0.61 9.89 59.85 0.59 1.20 16 9 C 0.09 1.10 5.11 -4.04 -0.02 1.07 16 10 C 0.09 1.45 3.30 -26.73 -0.09 1.36 16 11 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 12 O -0.55 -9.07 12.64 -35.23 -0.45 -9.51 16 13 C 0.13 2.56 5.92 -4.04 -0.02 2.54 16 14 N -0.73 -19.12 5.49 -59.91 -0.33 -19.45 16 15 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 19 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 C -0.04 -0.36 4.78 -104.63 -0.50 -0.86 16 24 C -0.13 -0.84 8.76 -39.58 -0.35 -1.19 16 25 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 26 C -0.16 -1.19 10.03 -39.51 -0.40 -1.58 16 27 C 0.10 0.93 7.30 -39.42 -0.29 0.64 16 28 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 29 C -0.15 -1.36 9.65 -39.52 -0.38 -1.74 16 30 H 0.05 0.37 7.37 -51.93 -0.38 -0.01 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.94 5.95 -51.93 -0.31 0.64 16 33 H 0.09 0.56 6.84 -51.93 -0.36 0.21 16 34 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.35 6.44 -51.93 -0.33 0.02 16 37 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 38 H 0.09 1.28 7.42 -51.93 -0.39 0.90 16 39 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 40 H 0.37 4.77 9.05 45.56 0.41 5.18 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.39 11.07 7.54 -40.82 -0.31 10.76 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.13 0.62 7.16 -52.48 -0.38 0.25 16 46 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 47 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.14 1.19 7.95 -52.48 -0.42 0.78 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -35.29 398.08 -8.23 -43.52 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.60 Total: 10.84 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.15 Total: -3.81 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.12 Total: -55.10 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.37 Total: -17.85 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.29 -8.23 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.062 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds