Wall clock time and date at job start Tue Mar 31 2020 20:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47240 * 2 1 4 4 C 1.52994 * 109.47434 * 239.99392 * 2 1 3 5 5 C 1.50703 * 109.47165 * 65.00068 * 4 2 1 6 6 O 1.21281 * 119.99837 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00021 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99832 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99786 * 179.97438 * 7 5 4 10 10 C 1.53000 * 109.46840 * 90.00416 * 9 7 5 11 11 H 1.09002 * 109.47069 * 304.99442 * 10 9 7 12 12 O 1.42899 * 109.47405 * 64.99638 * 10 9 7 13 13 C 1.53006 * 109.46846 * 185.00008 * 10 9 7 14 14 N 1.46497 * 109.46795 * 179.97438 * 13 10 9 15 15 C 1.36940 * 119.99811 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00195 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46967 * 60.00291 * 19 17 15 21 21 H 1.48498 * 109.46842 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47240 * 300.00296 * 19 17 15 23 23 C 1.50704 * 109.46984 * 119.99120 * 2 1 3 24 24 C 1.38270 * 119.98397 * 59.72692 * 23 2 1 25 25 C 1.38219 * 120.04950 * 179.72285 * 24 23 2 26 26 C 1.38222 * 120.02687 * 0.55509 * 25 24 23 27 27 C 1.38443 * 119.97135 * 359.71937 * 26 25 24 28 28 F 1.35098 * 120.02121 * 180.02562 * 27 26 25 29 29 C 1.38169 * 119.99103 * 240.00401 * 23 2 1 30 30 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47451 * 300.00810 * 1 2 3 32 32 H 1.09004 * 109.46642 * 60.00795 * 1 2 3 33 33 H 1.09000 * 109.46983 * 305.00238 * 4 2 1 34 34 H 1.08999 * 109.47583 * 184.99877 * 4 2 1 35 35 H 1.09000 * 109.46899 * 269.99516 * 8 7 5 36 36 H 1.08992 * 109.47334 * 29.99480 * 8 7 5 37 37 H 1.08994 * 109.46680 * 150.00103 * 8 7 5 38 38 H 1.09002 * 109.47391 * 330.00086 * 9 7 5 39 39 H 1.09001 * 109.46813 * 210.00142 * 9 7 5 40 40 H 0.96702 * 113.99557 * 60.00388 * 12 10 9 41 41 H 1.09002 * 109.46824 * 299.99583 * 13 10 9 42 42 H 1.09001 * 109.47241 * 59.99481 * 13 10 9 43 43 H 0.96995 * 120.00714 * 0.02562 * 14 13 10 44 44 H 0.96998 * 120.00304 * 180.02562 * 18 17 15 45 45 H 1.08005 * 119.97487 * 359.97438 * 24 23 2 46 46 H 1.08008 * 119.98742 * 180.27783 * 25 24 23 47 47 H 1.07999 * 120.01644 * 179.70165 * 26 25 24 48 48 H 1.08003 * 120.01380 * 0.02562 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4766 6 8 1.0118 1.0872 -2.3633 7 7 1.9855 -0.3917 -3.7001 8 6 2.7466 -1.6361 -3.8367 9 6 1.5975 0.3645 -4.8933 10 6 2.6945 1.3745 -5.2360 11 1 2.8931 2.0036 -4.3683 12 8 3.8869 0.6770 -5.6016 13 6 2.2359 2.2483 -6.4052 14 7 3.2860 3.2158 -6.7330 15 6 3.0995 4.1091 -7.7540 16 1 2.1781 4.1008 -8.3173 17 6 4.0943 5.0262 -8.0642 18 7 5.2170 5.0368 -7.3774 19 14 3.8395 6.2453 -9.4565 20 1 2.6525 7.0886 -9.1649 21 1 5.0411 7.1085 -9.5846 22 1 3.6227 5.5077 -10.7269 23 6 2.0323 -0.7102 1.2306 24 6 1.6934 -2.0323 1.4521 25 6 2.1581 -2.6867 2.5774 26 6 2.9527 -2.0167 3.4885 27 6 3.2880 -0.6913 3.2706 28 9 4.0651 -0.0356 4.1602 29 6 2.8266 -0.0384 2.1399 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.6054 -1.7199 -1.2949 34 1 3.1264 -0.7995 -1.2055 35 1 3.8134 -1.4133 -3.8185 36 1 2.5009 -2.3047 -3.0118 37 1 2.4917 -2.1159 -4.7816 38 1 0.6640 0.8933 -4.7008 39 1 1.4609 -0.3213 -5.7295 40 1 3.7837 0.0967 -6.3682 41 1 2.0373 1.6192 -7.2729 42 1 1.3263 2.7803 -6.1264 43 1 4.1137 3.2232 -6.2274 44 1 5.9120 5.6779 -7.5940 45 1 1.0685 -2.5553 0.7433 46 1 1.8964 -3.7208 2.7472 47 1 3.3117 -2.5268 4.3702 48 1 3.0872 0.9957 1.9692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571589606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:18 Heat of formation + Delta-G solvation = -125.029010 kcal Electronic energy + Delta-G solvation = -28825.246161 eV Core-core repulsion = 24600.713412 eV Total energy + Delta-G solvation = -4224.532750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.90973 -41.31730 -40.15533 -38.85366 -36.48075 -35.90463 -35.77175 -33.25398 -31.81449 -31.36155 -30.46180 -28.90302 -27.81409 -26.54357 -24.96679 -24.18820 -23.70919 -22.72141 -21.47412 -19.97886 -19.25899 -18.53839 -17.79610 -17.77734 -17.28153 -17.06902 -17.02964 -16.61808 -16.50591 -16.47613 -16.23392 -15.61836 -15.26240 -14.97737 -14.74732 -14.59085 -14.40759 -14.23731 -13.95237 -13.78799 -13.68197 -13.61087 -13.23057 -13.09114 -12.98833 -12.83441 -12.73577 -12.62991 -12.51642 -12.22999 -12.11333 -12.03566 -11.83419 -11.77539 -11.71213 -11.23448 -10.98984 -10.66587 -9.91829 -9.60773 -9.50515 -9.04054 -7.96380 -5.26932 0.19892 0.26660 1.44824 1.49259 1.55397 1.65438 2.05629 2.54298 2.64620 3.21935 3.34621 3.49201 3.50345 3.72804 3.75944 3.89553 3.97371 4.07818 4.10135 4.17951 4.21311 4.29030 4.35506 4.41999 4.48457 4.51561 4.58691 4.66826 4.72663 4.74779 4.85547 4.90650 4.91305 5.03682 5.07928 5.14550 5.17167 5.20972 5.22106 5.36371 5.44230 5.46368 5.57091 5.61091 5.96938 6.23933 6.44329 6.89834 7.23228 7.30154 8.06342 8.29351 9.26934 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.002001 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.672968 B =13992.039480 C =14726.343550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 H 0.059 0.941 4 C -0.121 4.121 5 C 0.501 3.499 6 O -0.580 6.580 7 N -0.608 5.608 8 C 0.074 3.926 9 C 0.097 3.903 10 C 0.104 3.896 11 H 0.060 0.940 12 O -0.562 6.562 13 C 0.123 3.877 14 N -0.742 5.742 15 C -0.250 4.250 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.273 1.273 23 C -0.049 4.049 24 C -0.119 4.119 25 C -0.082 4.082 26 C -0.161 4.161 27 C 0.074 3.926 28 F -0.155 7.155 29 C -0.168 4.168 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.384 0.616 41 H 0.041 0.959 42 H 0.021 0.979 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.157 0.843 46 H 0.167 0.833 47 H 0.149 0.851 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 -25.845 18.900 33.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 H 0.078 0.922 4 C -0.160 4.160 5 C 0.291 3.709 6 O -0.460 6.460 7 N -0.339 5.339 8 C -0.068 4.068 9 C -0.027 4.027 10 C 0.043 3.957 11 H 0.078 0.922 12 O -0.368 6.368 13 C -0.004 4.004 14 N -0.385 5.385 15 C -0.382 4.382 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.198 1.198 23 C -0.049 4.049 24 C -0.137 4.137 25 C -0.099 4.099 26 C -0.180 4.180 27 C 0.055 3.945 28 F -0.134 7.134 29 C -0.187 4.187 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.232 0.768 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.175 0.825 46 H 0.184 0.816 47 H 0.167 0.833 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.569 -24.914 19.355 32.968 hybrid contribution 0.595 1.497 -0.748 1.776 sum -8.974 -23.417 18.607 31.227 Atomic orbital electron populations 1.21895 0.93151 1.02876 1.02097 1.19819 0.97044 0.98244 0.90326 0.92230 1.21776 1.03747 1.00814 0.89674 1.21309 0.78488 0.85412 0.85649 1.90688 1.42112 1.26414 1.86807 1.47868 1.55285 1.25628 1.05158 1.22094 0.95822 0.83941 1.04950 1.22019 0.96969 0.95054 0.88639 1.22189 0.85850 0.92182 0.95437 0.92221 1.86581 1.34842 1.62765 1.52620 1.21440 0.91470 0.91491 0.96004 1.42461 1.17857 1.38540 1.39600 1.19651 1.00678 1.09397 1.08441 0.90376 1.25688 0.96386 1.02277 1.02830 1.69853 1.07744 1.40008 1.44543 0.85128 0.76511 0.78513 0.79085 1.20439 1.22156 1.19845 1.19677 0.95593 0.94801 0.94816 1.21399 1.00280 0.93289 0.98726 1.21402 0.94747 1.01325 0.92449 1.21451 1.01523 0.92339 1.02670 1.18006 0.95099 0.92277 0.89086 1.91465 1.73020 1.81601 1.67320 1.21181 1.01452 1.01275 0.94825 0.90459 0.93075 0.92497 0.85062 0.87863 0.92677 0.88392 0.89114 0.90277 0.86699 0.76769 0.94100 0.96072 0.79479 0.93998 0.82549 0.81598 0.83285 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.74 71.98 0.63 -1.89 16 2 C -0.04 -0.63 2.21 -11.54 -0.03 -0.66 16 3 H 0.06 1.43 7.69 -2.39 -0.02 1.41 16 4 C -0.12 -1.82 3.47 29.85 0.10 -1.71 16 5 C 0.50 11.91 7.39 87.66 0.65 12.56 16 6 O -0.58 -19.14 13.55 -3.03 -0.04 -19.18 16 7 N -0.61 -12.48 2.84 -846.76 -2.40 -14.88 16 8 C 0.07 0.87 9.89 127.77 1.26 2.13 16 9 C 0.10 2.34 5.11 86.38 0.44 2.78 16 10 C 0.10 3.50 3.30 30.60 0.10 3.60 16 11 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 12 O -0.56 -18.14 12.64 -148.98 -1.88 -20.03 16 13 C 0.12 4.99 5.92 86.38 0.51 5.50 16 14 N -0.74 -39.82 5.49 -343.44 -1.89 -41.71 16 15 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 18 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 19 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.05 -0.75 4.78 -19.87 -0.09 -0.84 16 24 C -0.12 -1.16 8.76 22.27 0.20 -0.97 16 25 C -0.08 -0.70 10.04 22.26 0.22 -0.47 16 26 C -0.16 -2.07 10.03 22.31 0.22 -1.84 16 27 C 0.07 1.39 7.30 22.38 0.16 1.55 16 28 F -0.16 -3.42 17.27 44.97 0.78 -2.65 16 29 C -0.17 -3.21 9.65 22.31 0.22 -3.00 16 30 H 0.08 0.91 7.37 -2.39 -0.02 0.90 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.33 5.95 -2.39 -0.01 1.32 16 33 H 0.13 0.97 6.84 -2.39 -0.02 0.96 16 34 H 0.10 1.45 8.11 -2.39 -0.02 1.43 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.56 6.44 -2.39 -0.02 0.54 16 37 H 0.09 0.74 7.89 -2.39 -0.02 0.72 16 38 H 0.08 2.16 7.42 -2.39 -0.02 2.14 16 39 H 0.11 1.94 7.89 -2.39 -0.02 1.93 16 40 H 0.38 9.25 9.05 -74.06 -0.67 8.58 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.37 22.01 7.54 -92.71 -0.70 21.31 16 44 H 0.25 15.56 8.31 -92.71 -0.77 14.78 16 45 H 0.16 0.65 7.16 -2.91 -0.02 0.63 16 46 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 47 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 48 H 0.12 2.51 7.95 -2.91 -0.02 2.49 16 Total: -1.00 -80.80 398.08 2.39 -78.41 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.39 Total: 33.79 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 5.90 Total: -1.22 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -4.01 Total: -118.52 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.92 Total: -39.21 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -80.80 2.39 -78.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.619 kcal (2) G-P(sol) polarization free energy of solvation -80.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds