Wall clock time and date at job start Tue Mar 31 2020 20:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47253 * 2 1 4 4 C 1.52998 * 109.47092 * 239.99729 * 2 1 3 5 5 C 1.50697 * 109.47195 * 65.00175 * 4 2 1 6 6 O 1.21282 * 119.99858 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00284 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00004 * 0.02562 * 7 5 4 9 9 C 1.46506 * 120.00290 * 180.02562 * 7 5 4 10 10 C 1.53001 * 109.47114 * 270.00378 * 9 7 5 11 11 H 1.09006 * 109.47121 * 59.99738 * 10 9 7 12 12 O 1.42895 * 109.46955 * 299.99823 * 10 9 7 13 13 C 1.52992 * 109.47148 * 179.97438 * 10 9 7 14 14 N 1.46499 * 109.47267 * 184.99978 * 13 10 9 15 15 C 1.36935 * 119.99938 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00518 * 359.72965 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46676 * 90.00727 * 19 17 15 21 21 H 1.48502 * 109.46977 * 210.00025 * 19 17 15 22 22 H 1.48494 * 109.47494 * 330.00753 * 19 17 15 23 23 C 1.50699 * 109.46914 * 119.99891 * 2 1 3 24 24 C 1.38270 * 119.98810 * 59.72791 * 23 2 1 25 25 C 1.38224 * 120.05355 * 179.72666 * 24 23 2 26 26 C 1.38218 * 120.02172 * 0.54564 * 25 24 23 27 27 C 1.38441 * 119.97660 * 359.72371 * 26 25 24 28 28 F 1.35101 * 120.02557 * 180.02562 * 27 26 25 29 29 C 1.38171 * 119.99088 * 239.99881 * 23 2 1 30 30 H 1.08998 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46856 * 300.00382 * 1 2 3 32 32 H 1.08997 * 109.46921 * 59.99935 * 1 2 3 33 33 H 1.09000 * 109.47095 * 305.00116 * 4 2 1 34 34 H 1.08997 * 109.47046 * 184.99937 * 4 2 1 35 35 H 1.08994 * 109.47389 * 270.00168 * 8 7 5 36 36 H 1.09007 * 109.46958 * 29.99862 * 8 7 5 37 37 H 1.09000 * 109.47278 * 149.99598 * 8 7 5 38 38 H 1.08996 * 109.46975 * 149.99846 * 9 7 5 39 39 H 1.08999 * 109.46944 * 30.00396 * 9 7 5 40 40 H 0.96699 * 114.00430 * 299.99811 * 12 10 9 41 41 H 1.09004 * 109.47330 * 64.99881 * 13 10 9 42 42 H 1.09005 * 109.47124 * 305.00085 * 13 10 9 43 43 H 0.96999 * 119.99984 * 359.97438 * 14 13 10 44 44 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 45 45 H 1.07997 * 119.97184 * 359.97438 * 24 23 2 46 46 H 1.07997 * 119.99167 * 180.27422 * 25 24 23 47 47 H 1.08005 * 120.01231 * 179.70673 * 26 25 24 48 48 H 1.08009 * 120.01216 * 0.02562 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 8 1.0110 1.0868 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 2.7463 -1.6358 -3.8369 9 6 1.5983 0.3654 -4.8933 10 6 0.2309 -0.1168 -5.3818 11 1 -0.5102 0.0373 -4.5974 12 8 0.3030 -1.5075 -5.7025 13 6 -0.1735 0.6740 -6.6274 14 7 -1.5322 0.2972 -7.0253 15 6 -2.1110 0.8795 -8.1212 16 1 -1.5677 1.6198 -8.6897 17 6 -3.3982 0.5220 -8.4986 18 7 -4.0624 -0.3763 -7.8027 19 14 -4.1881 1.3169 -9.9931 20 1 -3.8773 0.5138 -11.2031 21 1 -5.6596 1.3759 -9.8027 22 1 -3.6551 2.6926 -10.1618 23 6 2.0323 -0.7104 1.2305 24 6 1.6935 -2.0325 1.4519 25 6 2.1581 -2.6871 2.5772 26 6 2.9528 -2.0171 3.4882 27 6 3.2882 -0.6917 3.2705 28 9 4.0653 -0.0361 4.1600 29 6 2.8267 -0.0387 2.1399 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 3.1263 -0.7995 -1.2055 35 1 3.8132 -1.4132 -3.8187 36 1 2.5006 -2.3046 -3.0119 37 1 2.4914 -2.1156 -4.7819 38 1 2.3395 0.2113 -5.6775 39 1 1.5434 1.4262 -4.6487 40 1 0.9441 -1.7188 -6.3948 41 1 0.5180 0.4510 -7.4399 42 1 -0.1424 1.7410 -6.4064 43 1 -2.0217 -0.3648 -6.5125 44 1 -4.9620 -0.6257 -8.0662 45 1 1.0686 -2.5553 0.7430 46 1 1.8964 -3.7210 2.7469 47 1 3.3118 -2.5274 4.3699 48 1 3.0873 0.9955 1.9692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571589607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:24 Heat of formation + Delta-G solvation = -100.898500 kcal Electronic energy + Delta-G solvation = -28850.804387 eV Core-core repulsion = 24627.318015 eV Total energy + Delta-G solvation = -4223.486372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.21742 -40.45959 -39.45446 -37.58658 -35.42437 -35.03075 -34.01386 -31.46080 -31.15017 -30.32061 -29.51648 -27.96860 -26.77306 -25.21502 -23.97145 -23.14896 -22.68417 -21.25551 -20.70248 -19.11964 -17.80818 -17.15839 -17.03471 -16.71596 -16.49954 -16.41659 -16.09965 -15.91692 -15.27637 -15.12375 -14.68118 -14.46599 -14.27713 -13.98122 -13.68955 -13.57618 -13.32582 -13.05092 -13.03285 -12.86995 -12.64685 -12.44682 -12.41015 -12.24790 -12.06343 -11.86620 -11.56600 -11.36545 -11.13827 -11.00633 -10.93788 -10.80664 -10.68281 -10.17467 -9.91319 -9.74365 -9.61007 -9.33747 -9.01215 -8.88158 -8.50651 -6.90451 -5.73360 -3.02730 0.78164 0.83283 2.57884 2.89716 3.21681 3.44725 3.49450 3.51727 3.84275 4.19062 4.34608 4.53177 4.57324 4.65294 4.70377 4.74606 4.77953 4.82843 4.98389 5.01012 5.03444 5.15938 5.22580 5.30928 5.38310 5.44845 5.50284 5.57322 5.59377 5.68134 5.69287 5.72818 5.79384 5.82130 5.90945 5.95813 6.00821 6.21246 6.24072 6.30807 6.45679 6.52832 6.55159 6.75098 7.30067 7.70142 8.00476 8.14095 8.44774 9.56108 10.14096 10.49665 11.49082 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023382 B = 0.001891 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.217278 B =14802.571024 C =15076.850449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.037 4.037 3 H 0.089 0.911 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.533 6.533 7 N -0.607 5.607 8 C 0.080 3.920 9 C 0.086 3.914 10 C 0.087 3.913 11 H 0.101 0.899 12 O -0.551 6.551 13 C 0.127 3.873 14 N -0.725 5.725 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.044 4.044 24 C -0.125 4.125 25 C -0.088 4.088 26 C -0.161 4.161 27 C 0.098 3.902 28 F -0.142 7.142 29 C -0.151 4.151 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.365 0.635 41 H 0.019 0.981 42 H 0.027 0.973 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.595 -5.934 20.791 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.056 4.056 3 H 0.107 0.893 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.340 5.340 8 C -0.063 4.063 9 C -0.038 4.038 10 C 0.026 3.974 11 H 0.119 0.881 12 O -0.355 6.355 13 C -0.002 4.002 14 N -0.370 5.370 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.044 4.044 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.180 4.180 27 C 0.079 3.921 28 F -0.120 7.120 29 C -0.169 4.169 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.211 0.789 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.222 0.778 44 H 0.065 0.935 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 18.799 -5.288 21.207 28.829 hybrid contribution 0.028 0.265 -0.954 0.990 sum 18.827 -5.022 20.253 28.105 Atomic orbital electron populations 1.21987 0.92963 1.02126 1.03743 1.19936 0.97269 0.99188 0.89195 0.89268 1.21764 1.02793 1.00339 0.92194 1.20583 0.79283 0.85706 0.84422 1.90699 1.39440 1.24692 1.86195 1.47724 1.55485 1.24882 1.05916 1.21822 0.94895 0.85734 1.03851 1.22209 0.97172 0.97732 0.86639 1.22547 0.95521 0.81568 0.97740 0.88117 1.86627 1.65004 1.24041 1.59795 1.21225 0.89283 0.96593 0.93098 1.42243 1.11384 1.49918 1.33434 1.19222 0.97021 1.17526 1.03590 0.91263 1.24768 0.97168 0.99593 0.99462 1.69681 1.12349 1.34918 1.40875 0.86178 0.78613 0.78719 0.82592 1.21732 1.21743 1.20773 1.19785 0.95164 0.93917 0.95541 1.21143 1.00613 0.94359 0.98172 1.21024 0.96061 1.00085 0.93443 1.21150 1.01807 0.93285 1.01737 1.17711 0.94255 0.91190 0.88926 1.91503 1.72487 1.81128 1.66909 1.21096 1.00557 1.01216 0.94060 0.92840 0.92615 0.89706 0.88533 0.88909 0.92981 0.91150 0.90289 0.90287 0.88856 0.78878 0.96305 0.95576 0.77758 0.93507 0.85150 0.84940 0.84925 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.74 37.16 0.32 -1.25 16 2 C -0.04 -0.34 2.21 -91.77 -0.20 -0.54 16 3 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 4 C -0.13 -1.11 3.47 -27.89 -0.10 -1.21 16 5 C 0.51 6.23 7.39 -10.99 -0.08 6.15 16 6 O -0.53 -8.45 13.54 5.56 0.08 -8.38 16 7 N -0.61 -6.74 2.80 -181.57 -0.51 -7.25 16 8 C 0.08 0.61 9.98 59.85 0.60 1.20 16 9 C 0.09 1.08 5.10 -4.04 -0.02 1.06 16 10 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 11 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 12 O -0.55 -8.79 12.01 -35.23 -0.42 -9.21 16 13 C 0.13 2.53 5.90 -4.05 -0.02 2.51 16 14 N -0.73 -18.94 5.55 -59.91 -0.33 -19.27 16 15 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 19 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 C -0.04 -0.36 4.78 -104.64 -0.50 -0.86 16 24 C -0.12 -0.89 8.76 -39.57 -0.35 -1.24 16 25 C -0.09 -0.57 10.04 -39.59 -0.40 -0.96 16 26 C -0.16 -1.17 10.03 -39.51 -0.40 -1.57 16 27 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 28 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 29 C -0.15 -1.29 9.65 -39.52 -0.38 -1.67 16 30 H 0.05 0.50 7.37 -51.93 -0.38 0.12 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 33 H 0.10 0.70 6.84 -51.93 -0.36 0.34 16 34 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 37 H 0.08 0.59 6.88 -51.93 -0.36 0.23 16 38 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.09 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.37 4.53 8.79 45.56 0.40 4.93 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.39 10.94 7.67 -40.82 -0.31 10.63 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.13 0.78 7.16 -52.49 -0.38 0.40 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 48 H 0.14 1.04 7.95 -52.48 -0.42 0.62 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -34.95 396.52 -8.19 -43.15 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.57 Total: 10.84 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.15 Total: -4.05 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.12 Total: -54.70 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.35 Total: -17.59 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.95 -8.19 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.753 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds