Wall clock time and date at job start Tue Mar 31 2020 20:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47284 * 120.00498 * 2 1 3 5 5 C 1.50700 * 109.46756 * 294.99909 * 4 2 1 6 6 O 1.21283 * 120.00485 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99799 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00254 * 359.97438 * 7 5 4 9 9 C 1.46502 * 120.00104 * 179.97438 * 7 5 4 10 10 C 1.52997 * 109.46944 * 90.00005 * 9 7 5 11 11 H 1.08998 * 109.47170 * 304.99957 * 10 9 7 12 12 O 1.42901 * 109.47221 * 65.00202 * 10 9 7 13 13 C 1.53004 * 109.47051 * 185.00409 * 10 9 7 14 14 N 1.46500 * 109.47242 * 180.02562 * 13 10 9 15 15 C 1.36933 * 120.00239 * 179.97438 * 14 13 10 16 16 H 1.08007 * 120.00054 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31611 * 119.99929 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47350 * 60.00099 * 19 17 15 21 21 H 1.48500 * 109.47042 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47154 * 300.00047 * 19 17 15 23 23 C 1.50699 * 109.46577 * 240.00126 * 2 1 3 24 24 C 1.38264 * 119.99175 * 300.02021 * 23 2 1 25 25 C 1.38223 * 120.05372 * 179.97438 * 24 23 2 26 26 C 1.38223 * 120.02448 * 0.02779 * 25 24 23 27 27 C 1.38437 * 119.97390 * 359.69495 * 26 25 24 28 28 F 1.35099 * 120.02356 * 180.32333 * 27 26 25 29 29 C 1.38183 * 119.98467 * 120.00449 * 23 2 1 30 30 H 1.09007 * 109.46603 * 299.99435 * 1 2 3 31 31 H 1.08994 * 109.47161 * 59.99473 * 1 2 3 32 32 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47089 * 54.99298 * 4 2 1 34 34 H 1.08997 * 109.47124 * 174.99997 * 4 2 1 35 35 H 1.09000 * 109.47011 * 89.99717 * 8 7 5 36 36 H 1.09001 * 109.47288 * 210.00007 * 8 7 5 37 37 H 1.09001 * 109.46928 * 330.00106 * 8 7 5 38 38 H 1.08994 * 109.47614 * 209.99853 * 9 7 5 39 39 H 1.09007 * 109.46870 * 330.00275 * 9 7 5 40 40 H 0.96698 * 113.99758 * 59.99863 * 12 10 9 41 41 H 1.08998 * 109.46765 * 299.99796 * 13 10 9 42 42 H 1.09001 * 109.47707 * 59.99897 * 13 10 9 43 43 H 0.97004 * 119.99656 * 359.97438 * 14 13 10 44 44 H 0.97000 * 119.99886 * 179.97438 * 18 17 15 45 45 H 1.08004 * 119.96758 * 359.97438 * 24 23 2 46 46 H 1.07999 * 119.98701 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.01081 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.01017 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 8 1.0118 1.0873 2.3633 7 7 1.9854 -0.3916 3.7000 8 6 2.7465 -1.6359 3.8369 9 6 1.5984 0.3652 4.8932 10 6 0.2311 -0.1171 5.3818 11 1 -0.4912 -0.0458 4.5686 12 8 0.3312 -1.4761 5.8121 13 6 -0.2296 0.7556 6.5510 14 7 -1.5386 0.2933 7.0193 15 6 -2.1543 0.9266 8.0657 16 1 -1.6747 1.7667 8.5461 17 6 -3.3948 0.4890 8.5089 18 7 -3.9794 -0.5343 7.9232 19 14 -4.2343 1.3525 9.9369 20 1 -4.4602 2.7785 9.5893 21 1 -5.5379 0.6976 10.2140 22 1 -3.3719 1.2675 11.1428 23 6 2.0322 -0.7104 -1.2305 24 6 1.6977 -2.0340 -1.4494 25 6 2.1572 -2.6867 -2.5778 26 6 2.9523 -2.0168 -3.4887 27 6 3.2832 -0.6899 -3.2735 28 9 4.0549 -0.0323 -4.1664 29 6 2.8267 -0.0386 -2.1399 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7199 1.2951 34 1 3.1264 -0.7996 1.2055 35 1 3.8133 -1.4132 3.8186 36 1 2.4915 -2.1157 4.7818 37 1 2.5007 -2.3046 3.0119 38 1 2.3394 0.2112 5.6775 39 1 1.5433 1.4261 4.6486 40 1 0.9578 -1.6144 6.5355 41 1 0.4926 0.6842 7.3642 42 1 -0.3061 1.7922 6.2229 43 1 -1.9692 -0.4614 6.5880 44 1 -4.8461 -0.8404 8.2332 45 1 1.0768 -2.5582 -0.7379 46 1 1.8949 -3.7204 -2.7479 47 1 3.3108 -2.5269 -4.3705 48 1 3.0873 0.9955 -1.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571589609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:34 Heat of formation + Delta-G solvation = -101.014594 kcal Electronic energy + Delta-G solvation = -28844.824566 eV Core-core repulsion = 24621.333160 eV Total energy + Delta-G solvation = -4223.491407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.21968 -40.46213 -39.45457 -37.57860 -35.43808 -35.03734 -33.98956 -31.44765 -31.14949 -30.32184 -29.51711 -27.96930 -26.76752 -25.21905 -23.97352 -23.15165 -22.68940 -21.22647 -20.70623 -19.11803 -17.80961 -17.15199 -17.03670 -16.71826 -16.50299 -16.40869 -16.11094 -15.91940 -15.30268 -15.08764 -14.66755 -14.46353 -14.28204 -13.98060 -13.69117 -13.56866 -13.33052 -13.05455 -13.03536 -12.87874 -12.64097 -12.44981 -12.37938 -12.25161 -12.07450 -11.87101 -11.56388 -11.36847 -11.13863 -11.00908 -10.92552 -10.79219 -10.66953 -10.19478 -9.92774 -9.73614 -9.60845 -9.33914 -9.01475 -8.87184 -8.50760 -6.89868 -5.72685 -3.02047 0.77967 0.83045 2.57296 2.89531 3.21433 3.45627 3.49616 3.51096 3.84093 4.18805 4.34306 4.52916 4.57393 4.64992 4.70226 4.75701 4.77652 4.82660 4.98304 5.00861 5.03692 5.16186 5.22985 5.31213 5.38018 5.44616 5.50004 5.57618 5.60436 5.67838 5.68752 5.72573 5.79557 5.82065 5.90525 5.95550 6.00799 6.20905 6.24837 6.30427 6.45812 6.52614 6.56013 6.76328 7.29734 7.70146 8.01893 8.13452 8.45575 9.56837 10.14996 10.50898 11.49652 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.001890 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.938751 B =14809.817642 C =15066.549926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.037 4.037 3 H 0.089 0.911 4 C -0.131 4.131 5 C 0.511 3.489 6 O -0.533 6.533 7 N -0.608 5.608 8 C 0.079 3.921 9 C 0.086 3.914 10 C 0.087 3.913 11 H 0.100 0.900 12 O -0.551 6.551 13 C 0.126 3.874 14 N -0.725 5.725 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.044 4.044 24 C -0.125 4.125 25 C -0.088 4.088 26 C -0.161 4.161 27 C 0.098 3.902 28 F -0.142 7.142 29 C -0.151 4.151 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.366 0.634 41 H 0.019 0.981 42 H 0.027 0.973 43 H 0.389 0.611 44 H 0.255 0.745 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.412 -5.624 -20.992 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.056 4.056 3 H 0.107 0.893 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.341 5.341 8 C -0.064 4.064 9 C -0.037 4.037 10 C 0.027 3.973 11 H 0.118 0.882 12 O -0.355 6.355 13 C -0.003 4.003 14 N -0.370 5.370 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.044 4.044 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.180 4.180 27 C 0.079 3.921 28 F -0.120 7.120 29 C -0.169 4.169 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.213 0.787 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 18.621 -5.031 -21.422 28.826 hybrid contribution 0.015 0.336 0.938 0.997 sum 18.635 -4.695 -20.483 28.087 Atomic orbital electron populations 1.21987 0.92966 1.02123 1.03742 1.19938 0.97265 0.99195 0.89193 0.89261 1.21768 1.02810 1.00333 0.92193 1.20592 0.79298 0.85719 0.84427 1.90700 1.39478 1.24638 1.86199 1.47749 1.55496 1.24908 1.05926 1.21830 0.94917 0.85716 1.03916 1.22220 0.97149 0.97695 0.86660 1.22537 0.95205 0.82310 0.97266 0.88230 1.86615 1.66913 1.26244 1.55728 1.21219 0.89736 0.95988 0.93321 1.42225 1.16998 1.38514 1.39222 1.19179 0.99969 1.10579 1.07683 0.91333 1.24762 0.97713 0.98545 0.99939 1.69670 1.17125 1.27621 1.43425 0.86256 0.78769 0.78810 0.82252 1.21258 1.21667 1.21305 1.19786 0.95149 0.93903 0.95571 1.21141 1.00675 0.94344 0.98135 1.21025 0.96045 1.00110 0.93424 1.21150 1.01798 0.93250 1.01781 1.17711 0.94386 0.91148 0.88828 1.91502 1.72810 1.81030 1.66682 1.21099 1.00567 1.01251 0.94015 0.89711 0.92609 0.92843 0.88539 0.88892 0.92970 0.90168 0.91173 0.90265 0.88860 0.78749 0.96350 0.95548 0.77683 0.93466 0.85154 0.84938 0.84923 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.75 37.16 0.33 -1.24 16 2 C -0.04 -0.34 2.21 -91.77 -0.20 -0.54 16 3 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 4 C -0.13 -1.11 3.47 -27.88 -0.10 -1.20 16 5 C 0.51 6.20 7.39 -10.99 -0.08 6.12 16 6 O -0.53 -8.42 13.55 5.55 0.08 -8.34 16 7 N -0.61 -6.76 2.84 -181.57 -0.52 -7.28 16 8 C 0.08 0.61 10.06 59.85 0.60 1.21 16 9 C 0.09 1.09 5.07 -4.04 -0.02 1.07 16 10 C 0.09 1.43 3.30 -26.73 -0.09 1.34 16 11 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 12 O -0.55 -8.86 11.91 -35.23 -0.42 -9.28 16 13 C 0.13 2.53 5.92 -4.04 -0.02 2.51 16 14 N -0.72 -18.93 5.49 -59.91 -0.33 -19.26 16 15 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 16 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 19 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.04 -0.36 4.78 -104.63 -0.50 -0.86 16 24 C -0.12 -0.89 8.76 -39.58 -0.35 -1.23 16 25 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 26 C -0.16 -1.17 10.03 -39.51 -0.40 -1.57 16 27 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 28 F -0.14 -1.38 17.27 2.25 0.04 -1.35 16 29 C -0.15 -1.28 9.65 -39.51 -0.38 -1.66 16 30 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.50 7.39 -51.93 -0.38 0.11 16 33 H 0.10 0.69 6.83 -51.93 -0.35 0.34 16 34 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.62 7.11 -51.93 -0.37 0.25 16 37 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 38 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 40 H 0.37 4.64 9.04 45.56 0.41 5.05 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.39 10.95 7.54 -40.82 -0.31 10.64 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.13 0.77 7.16 -52.48 -0.38 0.39 16 46 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 47 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 48 H 0.14 1.04 7.95 -52.49 -0.42 0.62 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -34.85 396.85 -8.18 -43.03 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.57 Total: 10.95 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.14 Total: -4.05 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.12 Total: -54.69 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.34 Total: -17.62 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.85 -8.18 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.984 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds