Wall clock time and date at job start Tue Mar 31 2020 20:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47284 * 120.00498 * 2 1 3 5 5 C 1.50700 * 109.46756 * 294.99909 * 4 2 1 6 6 O 1.21283 * 120.00485 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99799 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00254 * 359.97438 * 7 5 4 9 9 C 1.46502 * 120.00104 * 179.97438 * 7 5 4 10 10 C 1.52997 * 109.46944 * 90.00005 * 9 7 5 11 11 H 1.08998 * 109.47170 * 304.99957 * 10 9 7 12 12 O 1.42901 * 109.47221 * 65.00202 * 10 9 7 13 13 C 1.53004 * 109.47051 * 185.00409 * 10 9 7 14 14 N 1.46500 * 109.47242 * 180.02562 * 13 10 9 15 15 C 1.36933 * 120.00239 * 179.97438 * 14 13 10 16 16 H 1.08007 * 120.00054 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31611 * 119.99929 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47350 * 60.00099 * 19 17 15 21 21 H 1.48500 * 109.47042 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47154 * 300.00047 * 19 17 15 23 23 C 1.50699 * 109.46577 * 240.00126 * 2 1 3 24 24 C 1.38264 * 119.99175 * 300.02021 * 23 2 1 25 25 C 1.38223 * 120.05372 * 179.97438 * 24 23 2 26 26 C 1.38223 * 120.02448 * 0.02779 * 25 24 23 27 27 C 1.38437 * 119.97390 * 359.69495 * 26 25 24 28 28 F 1.35099 * 120.02356 * 180.32333 * 27 26 25 29 29 C 1.38183 * 119.98467 * 120.00449 * 23 2 1 30 30 H 1.09007 * 109.46603 * 299.99435 * 1 2 3 31 31 H 1.08994 * 109.47161 * 59.99473 * 1 2 3 32 32 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47089 * 54.99298 * 4 2 1 34 34 H 1.08997 * 109.47124 * 174.99997 * 4 2 1 35 35 H 1.09000 * 109.47011 * 89.99717 * 8 7 5 36 36 H 1.09001 * 109.47288 * 210.00007 * 8 7 5 37 37 H 1.09001 * 109.46928 * 330.00106 * 8 7 5 38 38 H 1.08994 * 109.47614 * 209.99853 * 9 7 5 39 39 H 1.09007 * 109.46870 * 330.00275 * 9 7 5 40 40 H 0.96698 * 113.99758 * 59.99863 * 12 10 9 41 41 H 1.08998 * 109.46765 * 299.99796 * 13 10 9 42 42 H 1.09001 * 109.47707 * 59.99897 * 13 10 9 43 43 H 0.97004 * 119.99656 * 359.97438 * 14 13 10 44 44 H 0.97000 * 119.99886 * 179.97438 * 18 17 15 45 45 H 1.08004 * 119.96758 * 359.97438 * 24 23 2 46 46 H 1.07999 * 119.98701 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.01081 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.01017 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 8 1.0118 1.0873 2.3633 7 7 1.9854 -0.3916 3.7000 8 6 2.7465 -1.6359 3.8369 9 6 1.5984 0.3652 4.8932 10 6 0.2311 -0.1171 5.3818 11 1 -0.4912 -0.0458 4.5686 12 8 0.3312 -1.4761 5.8121 13 6 -0.2296 0.7556 6.5510 14 7 -1.5386 0.2933 7.0193 15 6 -2.1543 0.9266 8.0657 16 1 -1.6747 1.7667 8.5461 17 6 -3.3948 0.4890 8.5089 18 7 -3.9794 -0.5343 7.9232 19 14 -4.2343 1.3525 9.9369 20 1 -4.4602 2.7785 9.5893 21 1 -5.5379 0.6976 10.2140 22 1 -3.3719 1.2675 11.1428 23 6 2.0322 -0.7104 -1.2305 24 6 1.6977 -2.0340 -1.4494 25 6 2.1572 -2.6867 -2.5778 26 6 2.9523 -2.0168 -3.4887 27 6 3.2832 -0.6899 -3.2735 28 9 4.0549 -0.0323 -4.1664 29 6 2.8267 -0.0386 -2.1399 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7199 1.2951 34 1 3.1264 -0.7996 1.2055 35 1 3.8133 -1.4132 3.8186 36 1 2.4915 -2.1157 4.7818 37 1 2.5007 -2.3046 3.0119 38 1 2.3394 0.2112 5.6775 39 1 1.5433 1.4261 4.6486 40 1 0.9578 -1.6144 6.5355 41 1 0.4926 0.6842 7.3642 42 1 -0.3061 1.7922 6.2229 43 1 -1.9692 -0.4614 6.5880 44 1 -4.8461 -0.8404 8.2332 45 1 1.0768 -2.5582 -0.7379 46 1 1.8949 -3.7204 -2.7479 47 1 3.3108 -2.5269 -4.3705 48 1 3.0873 0.9955 -1.9691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571589609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:33 Heat of formation + Delta-G solvation = -124.660976 kcal Electronic energy + Delta-G solvation = -28845.849950 eV Core-core repulsion = 24621.333160 eV Total energy + Delta-G solvation = -4224.516791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.89565 -41.31899 -40.15783 -38.85351 -36.47477 -35.90675 -35.75535 -33.24691 -31.81298 -31.36058 -30.46676 -28.91421 -27.81039 -26.53962 -24.98069 -24.17902 -23.70677 -22.71276 -21.45860 -19.98731 -19.24805 -18.53846 -17.78963 -17.71011 -17.35972 -17.11688 -16.98859 -16.60331 -16.47761 -16.46907 -16.16564 -15.62788 -15.32531 -14.99312 -14.74532 -14.59084 -14.32404 -14.25499 -13.94484 -13.78638 -13.70992 -13.59848 -13.24701 -13.08389 -12.97776 -12.84185 -12.73354 -12.61718 -12.58729 -12.22334 -12.10451 -12.03758 -11.83136 -11.80562 -11.71510 -11.18690 -10.98057 -10.66984 -9.91496 -9.61081 -9.49444 -9.02703 -7.95434 -5.25615 0.19586 0.26885 1.45717 1.49801 1.55918 1.66141 2.05018 2.55041 2.64119 3.21556 3.35424 3.48461 3.50633 3.73535 3.76950 3.88302 3.97613 4.07745 4.10807 4.19040 4.21736 4.28143 4.35569 4.42716 4.48245 4.49464 4.58542 4.67512 4.71505 4.74163 4.86619 4.89766 4.91469 5.01750 5.06846 5.13058 5.16331 5.20004 5.22520 5.34874 5.45070 5.45983 5.56712 5.61012 5.96374 6.25030 6.44385 6.89718 7.23369 7.31486 8.07545 8.30852 9.27739 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.001890 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.938751 B =14809.817642 C =15066.549926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.501 3.499 6 O -0.580 6.580 7 N -0.608 5.608 8 C 0.072 3.928 9 C 0.097 3.903 10 C 0.106 3.894 11 H 0.064 0.936 12 O -0.560 6.560 13 C 0.123 3.877 14 N -0.740 5.740 15 C -0.250 4.250 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.969 5.969 19 Si 0.978 3.022 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.274 1.274 23 C -0.048 4.048 24 C -0.124 4.124 25 C -0.084 4.084 26 C -0.161 4.161 27 C 0.077 3.923 28 F -0.153 7.153 29 C -0.161 4.161 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.383 0.617 41 H 0.040 0.960 42 H 0.021 0.979 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.146 0.854 46 H 0.161 0.839 47 H 0.149 0.851 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.197 -7.089 -20.891 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.050 4.050 3 H 0.091 0.909 4 C -0.161 4.161 5 C 0.291 3.709 6 O -0.460 6.460 7 N -0.340 5.340 8 C -0.069 4.069 9 C -0.027 4.027 10 C 0.046 3.954 11 H 0.082 0.918 12 O -0.367 6.367 13 C -0.005 4.005 14 N -0.383 5.383 15 C -0.382 4.382 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.620 5.620 19 Si 0.806 3.194 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.200 1.200 23 C -0.048 4.048 24 C -0.142 4.142 25 C -0.101 4.101 26 C -0.179 4.179 27 C 0.058 3.942 28 F -0.132 7.132 29 C -0.180 4.180 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.232 0.768 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.164 0.836 46 H 0.179 0.821 47 H 0.167 0.833 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.482 -6.498 -21.312 30.264 hybrid contribution -0.490 0.773 0.870 1.263 sum 19.992 -5.724 -20.442 29.160 Atomic orbital electron populations 1.21920 0.94246 1.02338 1.02004 1.19795 0.96099 0.98788 0.90297 0.90864 1.21779 1.04315 1.00245 0.89739 1.21311 0.78476 0.85429 0.85664 1.90688 1.41548 1.26838 1.86920 1.47871 1.55227 1.25834 1.05038 1.22105 0.95784 0.84302 1.04753 1.21982 0.95585 0.96927 0.88256 1.22167 0.96572 0.82060 0.94648 0.91830 1.86580 1.67867 1.25618 1.56611 1.21437 0.87634 0.96215 0.95181 1.42436 1.19022 1.38046 1.38819 1.19638 1.00226 1.10462 1.07877 0.90505 1.25659 0.98693 0.99654 1.03048 1.69844 1.17364 1.29480 1.45289 0.85149 0.77341 0.77665 0.79200 1.20513 1.22095 1.19959 1.19645 0.95664 0.94456 0.95058 1.21370 1.00347 0.93786 0.98686 1.21351 0.94969 1.01273 0.92542 1.21429 1.01394 0.92589 1.02500 1.17950 0.95198 0.92017 0.89018 1.91470 1.73240 1.81394 1.67047 1.21162 1.01031 1.01428 0.94337 0.92981 0.92748 0.91589 0.86558 0.86457 0.90553 0.90041 0.89498 0.86961 0.90427 0.76781 0.94255 0.96146 0.79378 0.93986 0.83615 0.82129 0.83283 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.75 71.98 0.63 -2.50 16 2 C -0.03 -0.55 2.21 -11.54 -0.03 -0.57 16 3 H 0.07 1.52 7.69 -2.39 -0.02 1.51 16 4 C -0.12 -1.84 3.47 29.85 0.10 -1.73 16 5 C 0.50 11.92 7.39 87.66 0.65 12.57 16 6 O -0.58 -19.09 13.55 -3.04 -0.04 -19.13 16 7 N -0.61 -12.56 2.84 -846.75 -2.40 -14.96 16 8 C 0.07 0.87 10.06 127.77 1.29 2.15 16 9 C 0.10 2.33 5.07 86.38 0.44 2.77 16 10 C 0.11 3.49 3.30 30.59 0.10 3.59 16 11 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 12 O -0.56 -17.44 11.91 -148.98 -1.77 -19.22 16 13 C 0.12 4.92 5.92 86.38 0.51 5.43 16 14 N -0.74 -39.20 5.49 -343.44 -1.89 -41.08 16 15 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 18 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 19 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 C -0.05 -0.72 4.78 -19.87 -0.09 -0.82 16 24 C -0.12 -1.44 8.76 22.27 0.20 -1.24 16 25 C -0.08 -0.82 10.04 22.26 0.22 -0.60 16 26 C -0.16 -2.00 10.03 22.31 0.22 -1.77 16 27 C 0.08 1.30 7.30 22.38 0.16 1.46 16 28 F -0.15 -2.97 17.27 44.97 0.78 -2.19 16 29 C -0.16 -2.68 9.65 22.31 0.22 -2.46 16 30 H 0.05 1.47 5.95 -2.38 -0.01 1.45 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.18 7.39 -2.39 -0.02 1.16 16 33 H 0.12 1.32 6.83 -2.39 -0.02 1.30 16 34 H 0.12 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.99 7.11 -2.39 -0.02 0.98 16 37 H 0.09 0.77 6.44 -2.39 -0.02 0.75 16 38 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 39 H 0.08 2.15 7.42 -2.38 -0.02 2.14 16 40 H 0.38 8.91 9.04 -74.06 -0.67 8.24 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.37 21.66 7.54 -92.71 -0.70 20.96 16 44 H 0.25 15.37 8.31 -92.71 -0.77 14.59 16 45 H 0.15 1.22 7.16 -2.91 -0.02 1.20 16 46 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 47 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 48 H 0.13 2.13 7.95 -2.91 -0.02 2.11 16 Total: -1.00 -77.99 396.85 2.52 -75.47 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.38 Total: 34.57 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.92 Total: -1.45 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -4.01 Total: -117.07 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.82 Total: -38.35 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -77.99 2.52 -75.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.192 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds