Wall clock time and date at job start Tue Mar 31 2020 20:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35956 * 116.99998 * 2 1 4 4 C 1.38661 * 120.05976 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96471 * 179.70262 * 4 3 2 6 6 C 1.38253 * 120.09365 * 0.54873 * 5 4 3 7 7 C 1.50706 * 119.93426 * 179.72267 * 6 5 4 8 8 C 1.52993 * 109.47162 * 269.72684 * 7 6 5 9 9 C 1.50706 * 109.47162 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99859 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00244 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00248 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46782 * 34.99976 * 12 11 9 14 14 C 1.52999 * 109.46854 * 275.00413 * 12 11 9 15 15 C 1.52992 * 109.47340 * 155.00374 * 12 11 9 16 16 N 1.46507 * 109.47222 * 304.99890 * 15 12 11 17 17 C 1.46501 * 119.99669 * 269.72843 * 16 15 12 18 18 C 1.36935 * 119.99934 * 89.99965 * 16 15 12 19 19 H 1.08002 * 120.00067 * 342.28959 * 18 16 15 20 20 C 1.38810 * 119.99865 * 162.29225 * 18 16 15 21 21 N 1.31616 * 120.00219 * 342.49841 * 20 18 16 22 22 Si 1.86798 * 119.99932 * 162.49731 * 20 18 16 23 23 H 1.48497 * 109.47070 * 84.99041 * 22 20 18 24 24 H 1.48504 * 109.47057 * 204.99489 * 22 20 18 25 25 H 1.48497 * 109.47165 * 324.99357 * 22 20 18 26 26 C 1.38255 * 120.13058 * 359.44916 * 6 5 4 27 27 C 1.38339 * 120.02918 * 0.27853 * 26 6 5 28 28 F 1.35095 * 120.04963 * 179.97438 * 27 26 6 29 29 H 1.09004 * 109.46920 * 60.00407 * 1 2 3 30 30 H 1.09003 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47166 * 300.00330 * 1 2 3 32 32 H 1.07997 * 120.01921 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.94971 * 180.29425 * 5 4 3 34 34 H 1.09004 * 109.46652 * 149.72638 * 7 6 5 35 35 H 1.09000 * 109.47312 * 29.73175 * 7 6 5 36 36 H 1.08996 * 109.47507 * 60.00125 * 8 7 6 37 37 H 1.09003 * 109.47260 * 299.99674 * 8 7 6 38 38 H 0.97005 * 119.99878 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.46952 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47070 * 299.99387 * 14 12 11 41 41 H 1.08999 * 109.47736 * 59.99935 * 14 12 11 42 42 H 1.09008 * 109.47334 * 185.00270 * 15 12 11 43 43 H 1.09001 * 109.47401 * 64.99822 * 15 12 11 44 44 H 1.09000 * 109.46751 * 265.24255 * 17 16 15 45 45 H 1.08993 * 109.47153 * 25.24376 * 17 16 15 46 46 H 1.09001 * 109.46689 * 145.24698 * 17 16 15 47 47 H 0.96996 * 120.00185 * 180.02562 * 21 20 18 48 48 H 1.07997 * 119.98847 * 180.24886 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0067 6 6 3.3023 3.6776 0.0010 7 6 3.9849 5.0212 0.0015 8 6 4.2159 5.4765 -1.4408 9 6 4.8991 6.8198 -1.4403 10 8 5.1746 7.3596 -0.3898 11 7 5.2048 7.4208 -2.6073 12 6 5.8694 8.7263 -2.6068 13 1 6.5596 8.7823 -1.7649 14 6 4.8202 9.8326 -2.4806 15 6 6.6440 8.9048 -3.9140 16 7 7.5657 7.7801 -4.0930 17 6 8.9303 7.8605 -3.5659 18 6 7.1535 6.6562 -4.7578 19 1 6.0994 6.4680 -4.8984 20 6 8.0906 5.7586 -5.2509 21 7 9.3452 6.1295 -5.3945 22 14 7.5710 4.0242 -5.7105 23 1 7.0434 4.0170 -7.0985 24 1 8.7429 3.1164 -5.6215 25 1 6.5136 3.5604 -4.7767 26 6 4.0579 2.5199 0.0005 27 6 3.4334 1.2855 -0.0001 28 9 4.1713 0.1539 -0.0011 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2137 2.3200 0.0005 33 1 1.3342 4.5114 0.0120 34 1 4.9430 4.9417 0.5152 35 1 3.3562 5.7481 0.5157 36 1 3.2579 5.5559 -1.9546 37 1 4.8448 4.7496 -1.9550 38 1 4.9848 6.9888 -3.4475 39 1 5.3147 10.8040 -2.4798 40 1 4.1301 9.7766 -3.3224 41 1 4.2683 9.7056 -1.5492 42 1 7.2098 9.8358 -3.8770 43 1 5.9445 8.9376 -4.7493 44 1 9.6034 8.2044 -4.3512 45 1 8.9569 8.5615 -2.7318 46 1 9.2457 6.8751 -3.2227 47 1 9.9999 5.5025 -5.7394 48 1 5.1363 2.5791 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649452126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:28 Heat of formation + Delta-G solvation = -80.533147 kcal Electronic energy + Delta-G solvation = -29331.226410 eV Core-core repulsion = 25108.623146 eV Total energy + Delta-G solvation = -4222.603264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.87337 -40.31935 -39.36512 -38.02161 -36.41899 -34.08316 -33.44557 -31.43377 -30.94800 -30.32029 -29.22432 -27.57072 -26.21068 -25.64024 -24.53433 -22.99336 -21.98583 -21.27688 -20.14272 -19.74399 -18.55466 -17.24822 -17.13618 -16.79315 -16.38211 -16.18751 -15.62501 -15.24255 -15.19821 -15.04601 -14.92215 -14.47011 -14.31365 -13.84418 -13.58589 -13.41018 -13.10603 -12.98349 -12.73322 -12.56771 -12.42981 -12.13736 -12.08499 -11.92864 -11.65549 -11.59160 -11.33245 -11.14919 -11.04587 -10.93844 -10.88446 -10.79509 -10.42006 -10.32220 -10.05164 -9.87813 -9.34300 -9.12455 -8.56381 -8.40411 -8.30210 -6.83141 -5.77430 -3.18095 0.92120 1.00660 2.85035 3.16196 3.30192 3.34006 3.40789 3.42905 3.79305 4.03261 4.42925 4.45018 4.54758 4.70504 4.77998 4.90311 5.02330 5.09754 5.14478 5.20348 5.28158 5.31276 5.39264 5.46062 5.59875 5.68194 5.72836 5.80852 5.84267 5.89305 5.93320 5.99140 6.13680 6.17083 6.20188 6.39845 6.43854 6.45029 6.45742 6.74741 6.81905 7.00385 7.15902 7.38724 7.62772 7.75505 8.15578 8.31570 8.79933 9.17530 9.82866 10.31222 11.27791 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003028 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.814139 B = 9245.446011 C =10999.074351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.086 3.914 4 C -0.180 4.180 5 C -0.086 4.086 6 C -0.083 4.083 7 C -0.059 4.059 8 C -0.138 4.138 9 C 0.513 3.487 10 O -0.562 6.562 11 N -0.696 5.696 12 C 0.117 3.883 13 H 0.076 0.924 14 C -0.158 4.158 15 C 0.141 3.859 16 N -0.600 5.600 17 C 0.164 3.836 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.896 3.104 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.111 4.111 27 C 0.072 3.928 28 F -0.133 7.133 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.403 0.597 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.027 0.973 45 H -0.003 1.003 46 H 0.044 0.956 47 H 0.253 0.747 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.085 -4.731 10.053 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.040 3.960 4 C -0.199 4.199 5 C -0.104 4.104 6 C -0.084 4.084 7 C -0.097 4.097 8 C -0.178 4.178 9 C 0.299 3.701 10 O -0.441 6.441 11 N -0.346 5.346 12 C 0.009 3.991 13 H 0.094 0.906 14 C -0.217 4.217 15 C 0.013 3.987 16 N -0.322 5.322 17 C 0.019 3.981 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.726 3.274 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.129 4.129 27 C 0.052 3.948 28 F -0.112 7.112 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.239 0.761 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.585 -4.682 10.702 21.112 hybrid contribution -0.370 -1.394 -0.813 1.656 sum -17.955 -6.076 9.889 21.380 Atomic orbital electron populations 1.23100 0.78052 1.04174 1.01469 1.86135 1.21619 1.25919 1.88886 1.18996 0.90808 0.85617 1.00570 1.21105 1.00146 0.91447 1.07176 1.20939 0.93948 0.97270 0.98291 1.19748 0.93304 0.95021 1.00319 1.20286 1.01536 0.91750 0.96146 1.21658 1.02059 0.95798 0.98307 1.20451 0.78924 0.86621 0.84066 1.90635 1.55349 1.66652 1.31505 1.45955 1.59226 1.21014 1.08388 1.21841 0.93582 0.81482 1.02151 0.90565 1.22119 0.99520 0.98694 1.01349 1.21048 0.92839 0.91294 0.93522 1.43876 1.09896 1.14286 1.64161 1.20777 0.85221 0.98318 0.93738 1.18985 0.91417 0.97774 1.29948 0.91582 1.24876 0.95946 0.99224 0.99592 1.70101 1.02083 1.33944 1.48634 0.86418 0.77594 0.85092 0.78285 1.21424 1.21561 1.20590 1.21031 1.01438 0.89687 1.00793 1.16973 0.85917 0.83034 1.08838 1.91503 1.76423 1.48991 1.94243 0.92423 0.88054 0.92490 0.84568 0.84895 0.89851 0.89975 0.89256 0.88505 0.76109 0.92190 0.92955 0.92936 0.93076 0.93104 0.95437 0.98428 0.93737 0.93702 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.50 10.36 -19.60 -0.20 -3.70 16 3 C 0.09 1.01 6.69 -39.18 -0.26 0.74 16 4 C -0.18 -1.68 9.04 -39.44 -0.36 -2.04 16 5 C -0.09 -0.82 9.69 -39.59 -0.38 -1.21 16 6 C -0.08 -0.93 5.13 -104.61 -0.54 -1.47 16 7 C -0.06 -0.71 4.63 -27.88 -0.13 -0.84 16 8 C -0.14 -1.82 5.68 -27.88 -0.16 -1.98 16 9 C 0.51 8.63 7.79 -10.98 -0.09 8.54 16 10 O -0.56 -11.02 15.64 5.55 0.09 -10.93 16 11 N -0.70 -11.85 4.49 -53.81 -0.24 -12.09 16 12 C 0.12 2.03 2.88 -67.94 -0.20 1.83 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 15 C 0.14 2.69 5.30 -4.04 -0.02 2.66 16 16 N -0.60 -14.21 2.82 -181.12 -0.51 -14.72 16 17 C 0.16 4.01 8.98 59.85 0.54 4.54 16 18 C -0.25 -6.37 8.79 -15.06 -0.13 -6.50 16 19 H 0.07 1.56 6.40 -52.49 -0.34 1.22 16 20 C 0.00 0.06 5.02 -17.43 -0.09 -0.03 16 21 N -0.90 -25.74 10.65 55.49 0.59 -25.15 16 22 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C -0.11 -1.35 9.67 -39.54 -0.38 -1.73 16 27 C 0.07 0.95 7.31 -39.30 -0.29 0.66 16 28 F -0.13 -1.94 17.11 2.25 0.04 -1.90 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 32 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 35 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.40 6.73 6.58 -40.82 -0.27 6.46 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.92 8.07 -51.92 -0.42 0.50 16 43 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 44 H 0.03 0.72 7.48 -51.93 -0.39 0.33 16 45 H 0.00 -0.06 8.04 -51.93 -0.42 -0.48 16 46 H 0.04 1.18 7.08 -51.93 -0.37 0.82 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -32.00 398.14 -7.89 -39.89 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.49 Total: 4.13 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.14 Total: 2.47 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.16 Total: -51.97 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.12 Total: -14.64 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.00 -7.89 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649452126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.645 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds