Wall clock time and date at job start Tue Mar 31 2020 20:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35956 * 116.99998 * 2 1 4 4 C 1.38661 * 120.05976 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96471 * 179.70262 * 4 3 2 6 6 C 1.38253 * 120.09365 * 0.54873 * 5 4 3 7 7 C 1.50706 * 119.93426 * 179.72267 * 6 5 4 8 8 C 1.52993 * 109.47162 * 269.72684 * 7 6 5 9 9 C 1.50706 * 109.47162 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99859 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00244 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00248 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46782 * 34.99976 * 12 11 9 14 14 C 1.52999 * 109.46854 * 275.00413 * 12 11 9 15 15 C 1.52992 * 109.47340 * 155.00374 * 12 11 9 16 16 N 1.46507 * 109.47222 * 304.99890 * 15 12 11 17 17 C 1.46501 * 119.99669 * 269.72843 * 16 15 12 18 18 C 1.36935 * 119.99934 * 89.99965 * 16 15 12 19 19 H 1.08002 * 120.00067 * 342.28959 * 18 16 15 20 20 C 1.38810 * 119.99865 * 162.29225 * 18 16 15 21 21 N 1.31616 * 120.00219 * 342.49841 * 20 18 16 22 22 Si 1.86798 * 119.99932 * 162.49731 * 20 18 16 23 23 H 1.48497 * 109.47070 * 84.99041 * 22 20 18 24 24 H 1.48504 * 109.47057 * 204.99489 * 22 20 18 25 25 H 1.48497 * 109.47165 * 324.99357 * 22 20 18 26 26 C 1.38255 * 120.13058 * 359.44916 * 6 5 4 27 27 C 1.38339 * 120.02918 * 0.27853 * 26 6 5 28 28 F 1.35095 * 120.04963 * 179.97438 * 27 26 6 29 29 H 1.09004 * 109.46920 * 60.00407 * 1 2 3 30 30 H 1.09003 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47166 * 300.00330 * 1 2 3 32 32 H 1.07997 * 120.01921 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.94971 * 180.29425 * 5 4 3 34 34 H 1.09004 * 109.46652 * 149.72638 * 7 6 5 35 35 H 1.09000 * 109.47312 * 29.73175 * 7 6 5 36 36 H 1.08996 * 109.47507 * 60.00125 * 8 7 6 37 37 H 1.09003 * 109.47260 * 299.99674 * 8 7 6 38 38 H 0.97005 * 119.99878 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.46952 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47070 * 299.99387 * 14 12 11 41 41 H 1.08999 * 109.47736 * 59.99935 * 14 12 11 42 42 H 1.09008 * 109.47334 * 185.00270 * 15 12 11 43 43 H 1.09001 * 109.47401 * 64.99822 * 15 12 11 44 44 H 1.09000 * 109.46751 * 265.24255 * 17 16 15 45 45 H 1.08993 * 109.47153 * 25.24376 * 17 16 15 46 46 H 1.09001 * 109.46689 * 145.24698 * 17 16 15 47 47 H 0.96996 * 120.00185 * 180.02562 * 21 20 18 48 48 H 1.07997 * 119.98847 * 180.24886 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0067 6 6 3.3023 3.6776 0.0010 7 6 3.9849 5.0212 0.0015 8 6 4.2159 5.4765 -1.4408 9 6 4.8991 6.8198 -1.4403 10 8 5.1746 7.3596 -0.3898 11 7 5.2048 7.4208 -2.6073 12 6 5.8694 8.7263 -2.6068 13 1 6.5596 8.7823 -1.7649 14 6 4.8202 9.8326 -2.4806 15 6 6.6440 8.9048 -3.9140 16 7 7.5657 7.7801 -4.0930 17 6 8.9303 7.8605 -3.5659 18 6 7.1535 6.6562 -4.7578 19 1 6.0994 6.4680 -4.8984 20 6 8.0906 5.7586 -5.2509 21 7 9.3452 6.1295 -5.3945 22 14 7.5710 4.0242 -5.7105 23 1 7.0434 4.0170 -7.0985 24 1 8.7429 3.1164 -5.6215 25 1 6.5136 3.5604 -4.7767 26 6 4.0579 2.5199 0.0005 27 6 3.4334 1.2855 -0.0001 28 9 4.1713 0.1539 -0.0011 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2137 2.3200 0.0005 33 1 1.3342 4.5114 0.0120 34 1 4.9430 4.9417 0.5152 35 1 3.3562 5.7481 0.5157 36 1 3.2579 5.5559 -1.9546 37 1 4.8448 4.7496 -1.9550 38 1 4.9848 6.9888 -3.4475 39 1 5.3147 10.8040 -2.4798 40 1 4.1301 9.7766 -3.3224 41 1 4.2683 9.7056 -1.5492 42 1 7.2098 9.8358 -3.8770 43 1 5.9445 8.9376 -4.7493 44 1 9.6034 8.2044 -4.3512 45 1 8.9569 8.5615 -2.7318 46 1 9.2457 6.8751 -3.2227 47 1 9.9999 5.5025 -5.7394 48 1 5.1363 2.5791 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649452126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:27 Heat of formation + Delta-G solvation = -99.228418 kcal Electronic energy + Delta-G solvation = -29332.037098 eV Core-core repulsion = 25108.623146 eV Total energy + Delta-G solvation = -4223.413952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.88024 -41.14266 -40.64861 -38.87278 -38.02438 -35.72365 -34.46766 -33.14209 -31.79855 -31.73313 -30.14498 -28.22106 -28.05892 -27.36402 -25.52627 -23.80365 -23.56676 -22.39265 -21.51613 -21.10498 -19.31798 -18.79646 -18.07717 -17.99217 -17.47408 -17.18282 -16.98269 -16.92762 -16.28222 -16.07500 -15.82644 -15.59398 -15.33525 -15.19752 -15.01996 -14.63823 -14.54829 -14.40596 -13.74149 -13.69339 -13.62384 -13.33263 -13.12068 -13.03033 -12.91421 -12.76687 -12.66505 -12.54558 -12.40500 -12.18210 -12.12960 -12.03337 -11.89340 -11.87921 -11.84720 -11.74897 -10.69087 -10.55883 -9.96772 -9.80081 -9.14440 -8.78888 -7.79301 -5.20566 0.09258 0.17235 1.46997 1.51164 1.56389 1.84827 2.18700 2.40166 2.52966 2.61384 3.18930 3.35356 3.62159 3.70912 3.74665 3.94584 4.08653 4.15364 4.21138 4.27870 4.33035 4.37549 4.39300 4.46924 4.50332 4.56383 4.71542 4.74117 4.78406 4.84488 4.86654 4.90321 4.92963 5.03051 5.08693 5.15946 5.21199 5.21864 5.32528 5.47287 5.53960 5.61965 5.64054 5.71089 5.82078 6.28083 6.32382 6.81373 7.16173 7.48054 7.90147 8.35250 9.25565 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003028 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.814139 B = 9245.446011 C =10999.074351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.081 3.919 4 C -0.171 4.171 5 C -0.075 4.075 6 C -0.089 4.089 7 C -0.051 4.051 8 C -0.131 4.131 9 C 0.509 3.491 10 O -0.593 6.593 11 N -0.698 5.698 12 C 0.124 3.876 13 H 0.048 0.952 14 C -0.146 4.146 15 C 0.141 3.859 16 N -0.614 5.614 17 C 0.179 3.821 18 C -0.240 4.240 19 H 0.087 0.913 20 C -0.059 4.059 21 N -0.942 5.942 22 Si 0.953 3.047 23 H -0.283 1.283 24 H -0.307 1.307 25 H -0.265 1.265 26 C -0.121 4.121 27 C 0.036 3.964 28 F -0.151 7.151 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.406 0.594 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.003 0.997 45 H 0.021 0.979 46 H 0.013 0.987 47 H 0.243 0.757 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.980 -4.070 10.082 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.035 3.965 4 C -0.189 4.189 5 C -0.093 4.093 6 C -0.090 4.090 7 C -0.088 4.088 8 C -0.170 4.170 9 C 0.296 3.704 10 O -0.475 6.475 11 N -0.348 5.348 12 C 0.017 3.983 13 H 0.066 0.934 14 C -0.204 4.204 15 C 0.014 3.986 16 N -0.337 5.337 17 C 0.034 3.966 18 C -0.370 4.370 19 H 0.105 0.895 20 C -0.253 4.253 21 N -0.590 5.590 22 Si 0.782 3.218 23 H -0.210 1.210 24 H -0.234 1.234 25 H -0.190 1.190 26 C -0.140 4.140 27 C 0.017 3.983 28 F -0.130 7.130 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.182 0.818 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.242 0.758 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.022 0.978 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.053 0.947 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.541 -4.004 10.734 24.398 hybrid contribution 0.757 -1.534 -0.779 1.880 sum -20.783 -5.539 9.955 23.701 Atomic orbital electron populations 1.23448 0.75568 1.05858 1.02914 1.86110 1.24269 1.26049 1.88761 1.19191 0.90417 0.86749 1.00112 1.21463 1.01674 0.90293 1.05507 1.21285 0.93196 0.98586 0.96191 1.19679 0.94165 0.93837 1.01296 1.20164 1.00915 0.92458 0.95298 1.21663 1.02908 0.93105 0.99353 1.21052 0.78450 0.87513 0.83348 1.90621 1.56644 1.67732 1.32515 1.46012 1.59049 1.21085 1.08699 1.21618 0.94077 0.82993 0.99642 0.93418 1.21998 0.98714 0.97980 1.01755 1.21247 0.92436 0.90187 0.94703 1.44123 1.10127 1.15551 1.63893 1.20476 0.85639 0.96917 0.93596 1.19468 0.92205 0.97745 1.27598 0.89533 1.25599 0.96167 1.02513 1.01048 1.70265 1.03117 1.34544 1.51033 0.85499 0.76830 0.81103 0.78350 1.20982 1.23408 1.18961 1.21063 1.01411 0.90119 1.01399 1.17317 0.86983 0.82753 1.11261 1.91440 1.77023 1.49909 1.94661 0.91012 0.86512 0.90827 0.81171 0.81843 0.91829 0.89094 0.86133 0.89332 0.75799 0.90570 0.91205 0.93493 0.91845 0.91824 0.97822 0.96056 0.96850 0.94737 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.13 10.36 -93.06 -0.96 -8.09 16 3 C 0.08 1.79 6.69 22.53 0.15 1.94 16 4 C -0.17 -2.62 9.04 22.36 0.20 -2.42 16 5 C -0.07 -1.16 9.69 22.26 0.22 -0.94 16 6 C -0.09 -1.85 5.13 -19.86 -0.10 -1.95 16 7 C -0.05 -1.14 4.63 29.85 0.14 -1.01 16 8 C -0.13 -3.18 5.68 29.85 0.17 -3.01 16 9 C 0.51 16.37 7.79 87.66 0.68 17.05 16 10 O -0.59 -22.87 15.64 -3.04 -0.05 -22.92 16 11 N -0.70 -22.46 4.49 -442.54 -1.99 -24.45 16 12 C 0.12 4.08 2.88 44.99 0.13 4.21 16 13 H 0.05 1.85 7.58 -2.39 -0.02 1.84 16 14 C -0.15 -3.69 9.48 71.98 0.68 -3.00 16 15 C 0.14 5.07 5.30 86.38 0.46 5.52 16 16 N -0.61 -28.69 2.82 -726.93 -2.05 -30.74 16 17 C 0.18 8.88 8.98 127.77 1.15 10.03 16 18 C -0.24 -11.91 8.79 84.03 0.74 -11.17 16 19 H 0.09 3.87 6.40 -2.91 -0.02 3.85 16 20 C -0.06 -3.17 5.02 84.86 0.43 -2.74 16 21 N -0.94 -55.16 10.65 21.65 0.23 -54.93 16 22 Si 0.95 43.52 29.59 68.60 2.03 45.55 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 26 C -0.12 -2.98 9.67 22.30 0.22 -2.76 16 27 C 0.04 0.97 7.31 22.45 0.16 1.13 16 28 F -0.15 -4.64 17.11 44.97 0.77 -3.87 16 29 H 0.07 0.50 7.66 -2.38 -0.02 0.49 16 30 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 32 H 0.17 1.38 6.30 -2.91 -0.02 1.37 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.06 1.68 8.04 -2.38 -0.02 1.66 16 35 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 36 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.41 12.52 6.58 -92.70 -0.61 11.91 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 2.13 8.07 -2.38 -0.02 2.11 16 43 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 44 H 0.00 0.19 7.48 -2.39 -0.02 0.17 16 45 H 0.02 0.92 8.04 -2.39 -0.02 0.90 16 46 H 0.01 0.71 7.08 -2.39 -0.02 0.69 16 47 H 0.24 14.11 8.31 -92.71 -0.77 13.33 16 48 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -71.38 398.14 4.87 -66.51 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.35 Total: 20.80 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.53 Total: 12.15 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.81 Total: -110.12 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.01 Total: -31.01 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.77 Total: -3.87 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.38 4.87 -66.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649452126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.715 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds