Wall clock time and date at job start Tue Mar 31 2020 20:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 117.00385 * 2 1 4 4 C 1.38668 * 120.05946 * 359.71356 * 3 2 1 5 5 C 1.38176 * 119.96684 * 180.27970 * 4 3 2 6 6 C 1.38258 * 120.10063 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94328 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47411 * 270.02927 * 7 6 5 9 9 C 1.50697 * 109.47004 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99787 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99642 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47396 * 324.99207 * 12 11 9 14 14 C 1.52994 * 109.47672 * 84.99878 * 12 11 9 15 15 C 1.53002 * 109.46718 * 204.99596 * 12 11 9 16 16 N 1.46504 * 109.47335 * 54.99786 * 15 12 11 17 17 C 1.46499 * 119.99918 * 270.00048 * 16 15 12 18 18 C 1.36939 * 119.99953 * 90.00037 * 16 15 12 19 19 H 1.07994 * 120.00149 * 23.61351 * 18 16 15 20 20 C 1.38811 * 119.99857 * 203.62017 * 18 16 15 21 21 N 1.31618 * 120.00305 * 11.30673 * 20 18 16 22 22 Si 1.86801 * 119.99876 * 191.30796 * 20 18 16 23 23 H 1.48499 * 109.47202 * 89.99655 * 22 20 18 24 24 H 1.48502 * 109.47131 * 210.00195 * 22 20 18 25 25 H 1.48497 * 109.47190 * 329.99819 * 22 20 18 26 26 C 1.38266 * 120.12307 * 0.05042 * 6 5 4 27 27 C 1.38328 * 120.02890 * 359.94854 * 26 6 5 28 28 F 1.35099 * 120.04936 * 179.97438 * 27 26 6 29 29 H 1.09005 * 109.46532 * 60.00709 * 1 2 3 30 30 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47185 * 300.00768 * 1 2 3 32 32 H 1.07993 * 120.01571 * 0.26493 * 4 3 2 33 33 H 1.08007 * 119.94946 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46529 * 30.02917 * 7 6 5 35 35 H 1.08996 * 109.47014 * 150.02569 * 7 6 5 36 36 H 1.08998 * 109.47266 * 299.99539 * 8 7 6 37 37 H 1.09004 * 109.46840 * 59.99415 * 8 7 6 38 38 H 0.96997 * 120.00137 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46578 * 299.99860 * 14 12 11 40 40 H 1.08999 * 109.47258 * 59.99244 * 14 12 11 41 41 H 1.08994 * 109.47525 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47397 * 174.99993 * 15 12 11 43 43 H 1.08999 * 109.47470 * 294.99744 * 15 12 11 44 44 H 1.09003 * 109.46616 * 94.53843 * 17 16 15 45 45 H 1.09000 * 109.47181 * 214.53342 * 17 16 15 46 46 H 1.08991 * 109.47290 * 334.53602 * 17 16 15 47 47 H 0.97002 * 120.00377 * 179.97438 * 21 20 18 48 48 H 1.08002 * 119.98310 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 -0.0060 5 6 1.9218 3.6052 -0.0118 6 6 3.3025 3.6776 -0.0112 7 6 3.9852 5.0211 -0.0170 8 6 4.2167 5.4694 -1.4613 9 6 4.8989 6.8131 -1.4670 10 8 5.1725 7.3587 -0.4190 11 7 5.2040 7.4090 -2.6368 12 6 5.8676 8.7150 -2.6423 13 1 5.5068 9.3095 -1.8030 14 6 7.3797 8.5193 -2.5160 15 6 5.5550 9.4403 -3.9527 16 7 4.1032 9.5220 -4.1314 17 6 3.3909 8.4542 -4.8376 18 6 3.4120 10.5964 -3.6384 19 1 3.9204 11.5341 -3.4692 20 6 2.0580 10.4802 -3.3558 21 7 1.4869 9.2944 -3.3468 22 14 1.0462 12.0069 -2.9883 23 1 0.4825 12.5434 -4.2531 24 1 -0.0607 11.6562 -2.0625 25 1 1.9124 13.0347 -2.3572 26 6 4.0581 2.5197 -0.0057 27 6 3.4334 1.2855 0.0002 28 9 4.1713 0.1539 0.0050 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2138 2.3201 -0.0064 33 1 1.3343 4.5115 -0.0169 34 1 3.3562 5.7504 0.4935 35 1 4.9430 4.9441 0.4975 36 1 4.8457 4.7401 -1.9718 37 1 3.2588 5.5463 -1.9758 38 1 4.9848 6.9728 -3.4750 39 1 7.6024 8.0026 -1.5824 40 1 7.7406 7.9249 -3.3553 41 1 7.8735 9.4910 -2.5205 42 1 5.9742 10.4460 -3.9204 43 1 5.9932 8.8907 -4.7858 44 1 3.0071 7.7340 -4.1151 45 1 2.5611 8.8816 -5.4005 46 1 4.0745 7.9527 -5.5226 47 1 0.5408 9.2132 -3.1489 48 1 5.1365 2.5789 -0.0056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649452132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:33 Heat of formation + Delta-G solvation = -82.112188 kcal Electronic energy + Delta-G solvation = -29304.883775 eV Core-core repulsion = 25082.212038 eV Total energy + Delta-G solvation = -4222.671737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.88914 -40.27174 -39.27749 -37.97146 -36.36310 -34.03299 -33.37751 -31.31177 -30.89977 -30.35656 -29.19329 -27.51764 -26.18490 -25.61932 -24.47034 -22.95196 -21.93212 -21.19806 -20.15054 -19.66231 -18.51016 -17.14825 -17.04519 -16.80023 -16.41042 -16.31995 -15.48486 -15.22568 -15.09381 -14.99236 -14.80630 -14.43636 -14.18772 -13.87743 -13.60594 -13.36182 -13.08478 -12.93174 -12.67237 -12.57321 -12.34095 -12.13794 -12.05018 -11.86047 -11.56461 -11.42859 -11.28219 -11.10919 -11.05087 -10.86870 -10.81058 -10.78321 -10.54143 -10.21175 -9.96556 -9.86743 -9.25335 -9.08896 -8.59999 -8.31597 -8.25660 -6.75750 -5.74581 -3.20388 0.96282 1.05222 2.88666 3.27290 3.35535 3.37574 3.44338 3.45255 3.85639 4.05739 4.48590 4.49603 4.60296 4.77844 4.84053 4.97173 5.08105 5.15215 5.18228 5.27035 5.32836 5.35130 5.45747 5.48410 5.68157 5.73286 5.76884 5.89961 5.91576 5.96746 6.01942 6.05703 6.11472 6.24060 6.27146 6.46774 6.47997 6.48594 6.55051 6.64166 6.90861 7.04128 7.23079 7.31050 7.63989 7.79225 8.18993 8.37951 8.89241 9.21827 9.84023 10.32410 11.30571 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002671 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.388179 B =10479.929838 C =11959.665537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.086 3.914 4 C -0.178 4.178 5 C -0.082 4.082 6 C -0.082 4.082 7 C -0.060 4.060 8 C -0.135 4.135 9 C 0.518 3.482 10 O -0.556 6.556 11 N -0.699 5.699 12 C 0.117 3.883 13 H 0.084 0.916 14 C -0.159 4.159 15 C 0.143 3.857 16 N -0.597 5.597 17 C 0.162 3.838 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.905 5.905 22 Si 0.904 3.096 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 C -0.113 4.113 27 C 0.068 3.932 28 F -0.135 7.135 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.394 0.606 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.032 0.968 45 H 0.042 0.958 46 H -0.006 1.006 47 H 0.250 0.750 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -16.439 3.802 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.040 3.960 4 C -0.197 4.197 5 C -0.100 4.100 6 C -0.083 4.083 7 C -0.098 4.098 8 C -0.175 4.175 9 C 0.304 3.696 10 O -0.434 6.434 11 N -0.348 5.348 12 C 0.009 3.991 13 H 0.102 0.898 14 C -0.218 4.218 15 C 0.014 3.986 16 N -0.320 5.320 17 C 0.017 3.983 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.132 4.132 27 C 0.048 3.952 28 F -0.114 7.114 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.013 0.987 47 H 0.061 0.939 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.166 -16.307 4.546 17.067 hybrid contribution -1.047 0.451 -0.168 1.152 sum 1.119 -15.857 4.378 16.488 Atomic orbital electron populations 1.23108 0.77972 1.04139 1.01636 1.86114 1.21687 1.25947 1.88921 1.18994 0.90807 0.85594 1.00594 1.21151 1.00308 0.91410 1.06799 1.21056 0.94120 0.97539 0.97256 1.19761 0.93364 0.94946 1.00205 1.20286 1.01361 0.91940 0.96197 1.21631 1.02554 0.95042 0.98309 1.20378 0.78316 0.86939 0.84000 1.90642 1.54908 1.66192 1.31704 1.45798 1.60241 1.20864 1.07926 1.21823 0.89947 0.84407 1.02884 0.89754 1.22150 0.97044 1.01418 1.01159 1.21195 0.86581 0.98006 0.92782 1.43884 1.00994 1.23351 1.63740 1.20842 0.93415 0.90698 0.93332 1.19179 0.91935 0.89551 1.37719 0.91483 1.25006 0.98090 0.96375 0.99859 1.70030 1.10879 1.20763 1.53336 0.86267 0.80029 0.82652 0.77653 1.21602 1.21800 1.20531 1.20936 1.01054 0.89651 1.01570 1.16933 0.85895 0.82915 1.09440 1.91487 1.76446 1.49103 1.94368 0.92313 0.88074 0.92443 0.84481 0.84538 0.89652 0.90165 0.89508 0.88457 0.77161 0.93008 0.93280 0.92214 0.92418 0.94094 0.95025 0.93915 0.98725 0.93939 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.52 10.36 -19.59 -0.20 -3.72 16 3 C 0.09 1.01 6.69 -39.17 -0.26 0.75 16 4 C -0.18 -1.84 9.04 -39.45 -0.36 -2.20 16 5 C -0.08 -0.90 9.69 -39.60 -0.38 -1.29 16 6 C -0.08 -0.95 5.13 -104.60 -0.54 -1.49 16 7 C -0.06 -0.78 4.63 -27.88 -0.13 -0.90 16 8 C -0.14 -1.85 5.68 -27.89 -0.16 -2.01 16 9 C 0.52 9.28 7.79 -10.98 -0.09 9.20 16 10 O -0.56 -11.88 15.64 5.56 0.09 -11.79 16 11 N -0.70 -12.28 4.41 -53.81 -0.24 -12.51 16 12 C 0.12 2.16 2.88 -67.93 -0.20 1.96 16 13 H 0.08 1.90 7.58 -51.93 -0.39 1.51 16 14 C -0.16 -2.37 9.48 37.15 0.35 -2.02 16 15 C 0.14 2.72 5.33 -4.04 -0.02 2.70 16 16 N -0.60 -14.08 2.78 -181.12 -0.50 -14.59 16 17 C 0.16 3.65 7.61 59.85 0.46 4.11 16 18 C -0.25 -6.79 9.66 -15.06 -0.15 -6.93 16 19 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 20 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 21 N -0.91 -25.31 10.66 55.49 0.59 -24.71 16 22 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C -0.11 -1.28 9.67 -39.54 -0.38 -1.66 16 27 C 0.07 0.85 7.31 -39.30 -0.29 0.56 16 28 F -0.14 -1.81 17.11 2.25 0.04 -1.77 16 29 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 32 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 33 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 35 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.39 6.35 7.17 -40.82 -0.29 6.06 16 39 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 43 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 44 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 45 H 0.04 1.07 7.30 -51.93 -0.38 0.69 16 46 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 398.93 15.07 6.01 6.01 Total: -1.00 -32.30 398.93 -8.02 -40.32 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.55 Total: 4.05 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.24 Total: 1.99 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.15 Total: -51.82 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.12 Total: -15.51 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.30 -8.02 -40.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649452132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.791 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds