Wall clock time and date at job start Tue Mar 31 2020 20:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 117.00385 * 2 1 4 4 C 1.38668 * 120.05946 * 359.71356 * 3 2 1 5 5 C 1.38176 * 119.96684 * 180.27970 * 4 3 2 6 6 C 1.38258 * 120.10063 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94328 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47411 * 270.02927 * 7 6 5 9 9 C 1.50697 * 109.47004 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99787 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99642 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47396 * 324.99207 * 12 11 9 14 14 C 1.52994 * 109.47672 * 84.99878 * 12 11 9 15 15 C 1.53002 * 109.46718 * 204.99596 * 12 11 9 16 16 N 1.46504 * 109.47335 * 54.99786 * 15 12 11 17 17 C 1.46499 * 119.99918 * 270.00048 * 16 15 12 18 18 C 1.36939 * 119.99953 * 90.00037 * 16 15 12 19 19 H 1.07994 * 120.00149 * 23.61351 * 18 16 15 20 20 C 1.38811 * 119.99857 * 203.62017 * 18 16 15 21 21 N 1.31618 * 120.00305 * 11.30673 * 20 18 16 22 22 Si 1.86801 * 119.99876 * 191.30796 * 20 18 16 23 23 H 1.48499 * 109.47202 * 89.99655 * 22 20 18 24 24 H 1.48502 * 109.47131 * 210.00195 * 22 20 18 25 25 H 1.48497 * 109.47190 * 329.99819 * 22 20 18 26 26 C 1.38266 * 120.12307 * 0.05042 * 6 5 4 27 27 C 1.38328 * 120.02890 * 359.94854 * 26 6 5 28 28 F 1.35099 * 120.04936 * 179.97438 * 27 26 6 29 29 H 1.09005 * 109.46532 * 60.00709 * 1 2 3 30 30 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47185 * 300.00768 * 1 2 3 32 32 H 1.07993 * 120.01571 * 0.26493 * 4 3 2 33 33 H 1.08007 * 119.94946 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46529 * 30.02917 * 7 6 5 35 35 H 1.08996 * 109.47014 * 150.02569 * 7 6 5 36 36 H 1.08998 * 109.47266 * 299.99539 * 8 7 6 37 37 H 1.09004 * 109.46840 * 59.99415 * 8 7 6 38 38 H 0.96997 * 120.00137 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46578 * 299.99860 * 14 12 11 40 40 H 1.08999 * 109.47258 * 59.99244 * 14 12 11 41 41 H 1.08994 * 109.47525 * 179.97438 * 14 12 11 42 42 H 1.09001 * 109.47397 * 174.99993 * 15 12 11 43 43 H 1.08999 * 109.47470 * 294.99744 * 15 12 11 44 44 H 1.09003 * 109.46616 * 94.53843 * 17 16 15 45 45 H 1.09000 * 109.47181 * 214.53342 * 17 16 15 46 46 H 1.08991 * 109.47290 * 334.53602 * 17 16 15 47 47 H 0.97002 * 120.00377 * 179.97438 * 21 20 18 48 48 H 1.08002 * 119.98310 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 -0.0060 5 6 1.9218 3.6052 -0.0118 6 6 3.3025 3.6776 -0.0112 7 6 3.9852 5.0211 -0.0170 8 6 4.2167 5.4694 -1.4613 9 6 4.8989 6.8131 -1.4670 10 8 5.1725 7.3587 -0.4190 11 7 5.2040 7.4090 -2.6368 12 6 5.8676 8.7150 -2.6423 13 1 5.5068 9.3095 -1.8030 14 6 7.3797 8.5193 -2.5160 15 6 5.5550 9.4403 -3.9527 16 7 4.1032 9.5220 -4.1314 17 6 3.3909 8.4542 -4.8376 18 6 3.4120 10.5964 -3.6384 19 1 3.9204 11.5341 -3.4692 20 6 2.0580 10.4802 -3.3558 21 7 1.4869 9.2944 -3.3468 22 14 1.0462 12.0069 -2.9883 23 1 0.4825 12.5434 -4.2531 24 1 -0.0607 11.6562 -2.0625 25 1 1.9124 13.0347 -2.3572 26 6 4.0581 2.5197 -0.0057 27 6 3.4334 1.2855 0.0002 28 9 4.1713 0.1539 0.0050 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2138 2.3201 -0.0064 33 1 1.3343 4.5115 -0.0169 34 1 3.3562 5.7504 0.4935 35 1 4.9430 4.9441 0.4975 36 1 4.8457 4.7401 -1.9718 37 1 3.2588 5.5463 -1.9758 38 1 4.9848 6.9728 -3.4750 39 1 7.6024 8.0026 -1.5824 40 1 7.7406 7.9249 -3.3553 41 1 7.8735 9.4910 -2.5205 42 1 5.9742 10.4460 -3.9204 43 1 5.9932 8.8907 -4.7858 44 1 3.0071 7.7340 -4.1151 45 1 2.5611 8.8816 -5.4005 46 1 4.0745 7.9527 -5.5226 47 1 0.5408 9.2132 -3.1489 48 1 5.1365 2.5789 -0.0056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649452132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:32 Heat of formation + Delta-G solvation = -100.928600 kcal Electronic energy + Delta-G solvation = -29305.699716 eV Core-core repulsion = 25082.212038 eV Total energy + Delta-G solvation = -4223.487678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.84502 -41.14103 -40.64182 -38.86761 -37.99151 -35.71400 -34.47542 -33.06694 -31.88151 -31.74021 -30.15791 -28.22836 -27.93457 -27.37364 -25.54136 -23.79594 -23.51429 -22.35598 -21.59514 -21.07211 -19.31003 -18.74467 -18.20913 -17.97846 -17.54268 -17.16805 -17.05139 -16.67373 -16.28964 -16.05439 -15.81794 -15.55208 -15.27805 -15.20080 -15.16554 -14.80066 -14.48033 -14.23560 -13.77423 -13.68694 -13.64245 -13.26827 -13.07493 -13.04727 -12.90389 -12.79563 -12.63556 -12.51671 -12.40617 -12.26572 -12.13791 -12.02472 -11.89340 -11.88449 -11.80201 -11.66559 -10.71150 -10.59274 -9.96113 -9.81875 -9.14289 -8.68277 -7.79266 -5.25297 0.09589 0.17358 1.45253 1.46690 1.53717 1.86636 2.18515 2.40217 2.52177 2.61598 3.17921 3.34468 3.62641 3.72329 3.76219 3.94679 4.04979 4.18026 4.23262 4.28037 4.35002 4.37841 4.39185 4.46536 4.51114 4.58086 4.71265 4.71993 4.79931 4.87498 4.88182 4.89877 4.95175 5.03911 5.07180 5.15792 5.20345 5.24910 5.40091 5.42760 5.55192 5.63006 5.68206 5.79487 5.84882 6.26535 6.37897 6.79896 7.21450 7.50043 7.92986 8.33798 9.22721 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002671 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.388179 B =10479.929838 C =11959.665537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.082 3.918 4 C -0.174 4.174 5 C -0.085 4.085 6 C -0.087 4.087 7 C -0.051 4.051 8 C -0.124 4.124 9 C 0.508 3.492 10 O -0.597 6.597 11 N -0.697 5.697 12 C 0.123 3.877 13 H 0.034 0.966 14 C -0.145 4.145 15 C 0.142 3.858 16 N -0.612 5.612 17 C 0.174 3.826 18 C -0.260 4.260 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.285 1.285 24 H -0.298 1.298 25 H -0.276 1.276 26 C -0.108 4.108 27 C 0.045 3.955 28 F -0.145 7.145 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.404 0.596 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.016 0.984 45 H 0.010 0.990 46 H 0.035 0.965 47 H 0.245 0.755 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -17.285 2.919 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.036 3.964 4 C -0.192 4.192 5 C -0.103 4.103 6 C -0.088 4.088 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.296 3.704 10 O -0.478 6.478 11 N -0.346 5.346 12 C 0.015 3.985 13 H 0.053 0.947 14 C -0.204 4.204 15 C 0.015 3.985 16 N -0.334 5.334 17 C 0.029 3.971 18 C -0.391 4.391 19 H 0.081 0.919 20 C -0.242 4.242 21 N -0.572 5.572 22 Si 0.787 3.213 23 H -0.212 1.212 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.126 4.126 27 C 0.025 3.975 28 F -0.124 7.124 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.239 0.761 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.617 -17.157 3.633 17.732 hybrid contribution -1.171 0.705 0.087 1.370 sum 1.445 -16.453 3.720 16.930 Atomic orbital electron populations 1.23428 0.75785 1.05891 1.02668 1.86097 1.24026 1.25849 1.88757 1.19167 0.90823 0.86296 1.00090 1.21357 1.01492 0.90496 1.05866 1.21209 0.94089 0.98151 0.96896 1.19602 0.93603 0.94196 1.01381 1.20138 1.01108 0.92181 0.95486 1.21612 1.02372 0.93234 0.99198 1.21121 0.77782 0.88113 0.83365 1.90620 1.56608 1.67542 1.33074 1.45820 1.59978 1.20433 1.08396 1.21604 0.92262 0.84266 1.00394 0.94727 1.22010 0.94092 1.02627 1.01676 1.21356 0.84102 0.98906 0.94097 1.44080 1.02713 1.22858 1.63784 1.20644 0.93335 0.89990 0.93126 1.19430 0.92368 0.90545 1.36743 0.91888 1.25633 0.99191 0.98596 1.00799 1.70163 1.10527 1.21951 1.54588 0.85418 0.78490 0.80158 0.77262 1.21229 1.22481 1.20119 1.21021 1.01788 0.89085 1.00740 1.17190 0.86470 0.82955 1.10840 1.91454 1.76725 1.49610 1.94601 0.91341 0.86138 0.91256 0.82055 0.84120 0.91653 0.90150 0.86409 0.88682 0.76091 0.94103 0.90615 0.90822 0.92178 0.90694 0.96571 0.97142 0.94664 0.94610 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.08 10.36 -93.02 -0.96 -8.05 16 3 C 0.08 1.85 6.69 22.53 0.15 2.00 16 4 C -0.17 -3.32 9.04 22.36 0.20 -3.12 16 5 C -0.09 -1.80 9.69 22.26 0.22 -1.59 16 6 C -0.09 -1.95 5.13 -19.85 -0.10 -2.06 16 7 C -0.05 -1.31 4.63 29.85 0.14 -1.17 16 8 C -0.12 -3.30 5.68 29.85 0.17 -3.13 16 9 C 0.51 18.17 7.79 87.65 0.68 18.85 16 10 O -0.60 -26.09 15.64 -3.04 -0.05 -26.13 16 11 N -0.70 -23.79 4.41 -442.54 -1.95 -25.74 16 12 C 0.12 4.42 2.88 44.99 0.13 4.55 16 13 H 0.03 1.60 7.58 -2.39 -0.02 1.58 16 14 C -0.15 -4.03 9.48 71.98 0.68 -3.35 16 15 C 0.14 5.15 5.33 86.38 0.46 5.62 16 16 N -0.61 -28.35 2.78 -726.94 -2.02 -30.37 16 17 C 0.17 7.67 7.61 127.77 0.97 8.64 16 18 C -0.26 -13.92 9.66 84.03 0.81 -13.11 16 19 H 0.06 3.35 7.85 -2.91 -0.02 3.33 16 20 C -0.05 -2.55 5.13 84.86 0.44 -2.12 16 21 N -0.93 -52.46 10.66 21.65 0.23 -52.23 16 22 Si 0.96 45.14 29.57 68.60 2.03 47.17 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C -0.11 -2.33 9.67 22.30 0.22 -2.11 16 27 C 0.05 1.09 7.31 22.45 0.16 1.26 16 28 F -0.15 -3.83 17.11 44.97 0.77 -3.06 16 29 H 0.07 0.66 7.65 -2.38 -0.02 0.64 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 32 H 0.16 2.19 6.30 -2.91 -0.02 2.17 16 33 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 35 H 0.08 2.03 8.04 -2.39 -0.02 2.01 16 36 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.40 12.20 7.17 -92.71 -0.67 11.53 16 39 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 43 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 44 H 0.02 0.76 6.90 -2.39 -0.02 0.74 16 45 H 0.01 0.50 7.30 -2.39 -0.02 0.48 16 46 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 47 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 48 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -71.15 398.93 4.78 -66.36 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.30 Total: 21.59 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.44 Total: 10.46 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.74 Total: -108.34 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.01 Total: -34.18 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.77 Total: -3.06 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.15 4.78 -66.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649452132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.564 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds