Wall clock time and date at job start Tue Mar 31 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30377 * 125.96708 * 2 1 4 4 N 1.39914 * 109.02612 * 180.28104 * 3 2 1 5 5 C 1.46497 * 125.74589 * 179.76024 * 4 3 2 6 6 C 1.34417 * 108.50982 * 359.73520 * 4 3 2 7 7 F 1.35102 * 126.34398 * 180.02562 * 6 4 3 8 8 C 1.38503 * 107.31506 * 0.02562 * 6 4 3 9 9 C 1.47163 * 126.45915 * 179.97438 * 8 6 4 10 10 O 1.21634 * 120.00353 * 90.01849 * 9 8 6 11 11 N 1.34787 * 119.99717 * 270.01906 * 9 8 6 12 12 C 1.46924 * 120.63033 * 359.72152 * 11 9 8 13 13 C 1.53187 * 108.77642 * 126.66473 * 12 11 9 14 14 C 1.53041 * 109.31211 * 54.63373 * 13 12 11 15 15 C 1.52994 * 109.46090 * 178.61149 * 14 13 12 16 16 C 1.52993 * 109.47626 * 295.07096 * 15 14 13 17 17 N 1.46503 * 109.47649 * 179.97438 * 16 15 14 18 18 C 1.36938 * 120.00068 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99930 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00471 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47162 * 120.00368 * 22 20 18 25 25 H 1.48504 * 109.46979 * 239.99955 * 22 20 18 26 26 C 1.53038 * 109.53768 * 298.63806 * 14 13 12 27 27 C 1.46926 * 120.62918 * 180.02562 * 11 9 8 28 28 H 1.08999 * 109.46987 * 270.14891 * 1 2 3 29 29 H 1.09001 * 109.46904 * 30.15363 * 1 2 3 30 30 H 1.09005 * 109.46923 * 150.14809 * 1 2 3 31 31 H 1.08999 * 109.46897 * 269.97126 * 5 4 3 32 32 H 1.08996 * 109.47635 * 29.97356 * 5 4 3 33 33 H 1.09002 * 109.47145 * 149.97512 * 5 4 3 34 34 H 1.09003 * 109.58516 * 246.45674 * 12 11 9 35 35 H 1.09002 * 109.58479 * 6.87832 * 12 11 9 36 36 H 1.08999 * 109.49975 * 294.68379 * 13 12 11 37 37 H 1.08998 * 109.50042 * 174.58459 * 13 12 11 38 38 H 1.09007 * 109.44471 * 58.64946 * 14 13 12 39 39 H 1.09007 * 109.46925 * 55.07096 * 15 14 13 40 40 H 1.08998 * 109.47122 * 175.06865 * 15 14 13 41 41 H 1.09004 * 109.47226 * 300.00428 * 16 15 14 42 42 H 1.08998 * 109.47059 * 59.99731 * 16 15 14 43 43 H 0.97000 * 119.99467 * 359.97438 * 17 16 15 44 44 H 0.96998 * 120.00745 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.49677 * 301.40907 * 26 14 13 46 46 H 1.09001 * 109.52131 * 181.33314 * 26 14 13 47 47 H 1.09002 * 109.58798 * 353.11768 * 27 11 9 48 48 H 1.08996 * 109.58781 * 113.40238 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0065 5 6 4.7762 1.5356 -0.0135 6 6 3.6479 -0.6961 -0.0046 7 9 4.7577 -1.4667 -0.0088 8 6 2.3375 -1.1444 0.0025 9 6 1.8931 -2.5473 0.0062 10 8 1.7144 -3.1259 1.0611 11 7 1.6842 -3.1912 -1.1593 12 6 1.8899 -2.5039 -2.4415 13 6 2.8416 -3.3405 -3.3023 14 6 2.2892 -4.7617 -3.4325 15 6 3.2194 -5.5908 -4.3202 16 6 3.2121 -5.0204 -5.7398 17 7 4.1033 -5.8140 -6.5897 18 6 4.2591 -5.4883 -7.9106 19 1 3.7247 -4.6468 -8.3260 20 6 5.1039 -6.2399 -8.7157 21 7 5.7549 -7.2659 -8.2096 22 14 5.3160 -5.7962 -10.5178 23 1 4.4804 -4.6109 -10.8373 24 1 6.7424 -5.4825 -10.7858 25 1 4.8940 -6.9422 -11.3627 26 6 2.1995 -5.4050 -2.0468 27 6 1.2400 -4.5916 -1.1718 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8914 -0.5116 31 1 5.0602 1.7542 -1.0429 32 1 4.5283 2.4644 0.5001 33 1 5.6072 1.0487 0.4969 34 1 0.9344 -2.3938 -2.9545 35 1 2.3267 -1.5212 -2.2634 36 1 3.8240 -3.3738 -2.8312 37 1 2.9272 -2.8913 -4.2917 38 1 1.2963 -4.7254 -3.8810 39 1 4.2323 -5.5542 -3.9191 40 1 2.8745 -6.6246 -4.3423 41 1 2.1992 -5.0569 -6.1409 42 1 3.5570 -3.9867 -5.7177 43 1 4.5836 -6.5696 -6.2165 44 1 6.3455 -7.7909 -8.7720 45 1 3.1879 -5.4189 -1.5875 46 1 1.8283 -6.4254 -2.1422 47 1 1.2480 -4.9866 -0.1559 48 1 0.2307 -4.6512 -1.5791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666258829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:05 Heat of formation + Delta-G solvation = 2.951206 kcal Electronic energy + Delta-G solvation = -29738.763519 eV Core-core repulsion = 25552.073159 eV Total energy + Delta-G solvation = -4186.690360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.64786 -41.82786 -40.01346 -37.85419 -35.29400 -34.62226 -33.52159 -31.70214 -30.96779 -30.62953 -29.85288 -28.38340 -26.59686 -25.05033 -23.55125 -23.22054 -22.35199 -21.25338 -20.82579 -20.26336 -19.34432 -18.06951 -17.43502 -17.03502 -16.88418 -16.42286 -16.21631 -15.11038 -15.07565 -14.78303 -14.66737 -14.51935 -14.08886 -14.00429 -13.86242 -13.81573 -13.67057 -13.45454 -13.12121 -13.09381 -12.83251 -12.80455 -12.63691 -12.51879 -12.19772 -11.36276 -11.26697 -11.26059 -11.14024 -10.98954 -10.79105 -10.59360 -10.29184 -10.20246 -10.11400 -9.91179 -9.75437 -9.66554 -9.05850 -8.85812 -8.77350 -6.89747 -5.75525 -3.03962 0.97874 1.50832 1.86195 2.30225 2.89452 3.43196 3.43502 3.48484 3.51026 3.90027 4.33772 4.45489 4.58207 4.60700 4.67822 4.68227 4.77783 4.87693 4.89297 4.89892 5.02677 5.18864 5.20718 5.31137 5.31567 5.41150 5.43275 5.56141 5.65210 5.71458 5.75164 5.84247 5.86090 5.93308 6.04772 6.07686 6.20020 6.26504 6.38264 6.39977 6.45092 6.48338 6.89083 6.94151 6.95474 7.20146 7.70775 7.97278 8.43787 9.54520 10.14199 10.48294 11.47641 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002411 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.252725 B =11609.394497 C =12499.698842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.131 3.869 3 N -0.270 5.270 4 N -0.373 5.373 5 C 0.091 3.909 6 C 0.295 3.705 7 F -0.086 7.086 8 C -0.286 4.286 9 C 0.600 3.400 10 O -0.534 6.534 11 N -0.598 5.598 12 C 0.110 3.890 13 C -0.132 4.132 14 C -0.081 4.081 15 C -0.121 4.121 16 C 0.153 3.847 17 N -0.735 5.735 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.129 4.129 27 C 0.112 3.888 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 16.853 20.050 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 N -0.092 5.092 4 N -0.158 5.158 5 C -0.049 4.049 6 C 0.147 3.853 7 F -0.065 7.065 8 C -0.302 4.302 9 C 0.386 3.614 10 O -0.410 6.410 11 N -0.331 5.331 12 C -0.012 4.012 13 C -0.170 4.170 14 C -0.101 4.101 15 C -0.159 4.159 16 C 0.026 3.974 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.167 4.167 27 C -0.010 4.010 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.216 0.784 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.110 0.890 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.767 17.953 20.449 28.589 hybrid contribution 1.007 -0.990 -1.042 1.755 sum -7.760 16.963 19.407 26.918 Atomic orbital electron populations 1.20321 0.85142 1.04116 1.04052 1.22190 0.97204 0.87922 0.96236 1.77321 0.84137 1.21117 1.26664 1.48686 1.07339 1.02610 1.57136 1.22109 0.83531 0.94620 1.04630 1.17787 0.83396 0.81876 1.02216 1.91688 1.49604 1.71493 1.93701 1.19592 0.90407 0.95600 1.24628 1.17063 0.76830 0.84041 0.83457 1.90788 1.51784 1.67562 1.30898 1.48094 1.66347 1.12923 1.05762 1.21778 1.00134 0.95923 0.83402 1.22054 0.98791 0.95811 1.00360 1.21081 0.99892 0.94320 0.94770 1.21758 0.99162 0.99224 0.95733 1.20694 0.93698 0.94312 0.88738 1.42406 1.52538 1.35382 1.07585 1.19282 1.21147 1.10392 0.86059 0.91192 1.24750 1.00016 0.98133 0.98292 1.69670 1.32893 1.20574 1.35173 0.86121 0.77397 0.77463 0.85263 1.20559 1.21895 1.21854 1.21994 1.00131 0.99171 0.95433 1.21691 0.97506 0.79832 1.01953 0.89445 0.89753 0.89949 0.89507 0.88062 0.88922 0.90916 0.90389 0.91545 0.89723 0.90889 0.92070 0.91853 0.96620 0.96384 0.78358 0.93582 0.91465 0.90391 0.89006 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.28 36.00 0.37 -0.17 16 2 C 0.13 1.32 7.26 -82.01 -0.60 0.72 16 3 N -0.27 -2.79 12.49 33.91 0.42 -2.36 16 4 N -0.37 -3.51 3.98 -67.94 -0.27 -3.78 16 5 C 0.09 0.46 11.43 59.85 0.68 1.14 16 6 C 0.29 3.26 8.59 -16.32 -0.14 3.12 16 7 F -0.09 -0.98 17.31 2.25 0.04 -0.94 16 8 C -0.29 -3.32 3.87 -104.97 -0.41 -3.73 16 9 C 0.60 7.80 7.24 -12.63 -0.09 7.70 16 10 O -0.53 -8.61 16.52 5.25 0.09 -8.53 16 11 N -0.60 -6.69 2.97 -174.11 -0.52 -7.21 16 12 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 13 C -0.13 -1.52 5.14 -26.61 -0.14 -1.66 16 14 C -0.08 -0.98 2.15 -90.58 -0.19 -1.18 16 15 C -0.12 -1.90 4.80 -26.74 -0.13 -2.03 16 16 C 0.15 3.03 6.01 -4.04 -0.02 3.01 16 17 N -0.74 -18.93 5.60 -59.91 -0.34 -19.26 16 18 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 C -0.13 -1.41 5.36 -26.59 -0.14 -1.55 16 27 C 0.11 1.17 6.43 -3.69 -0.02 1.15 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.54 8.01 -51.93 -0.42 0.13 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.77 6.25 -51.93 -0.32 0.44 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.02 6.50 -51.93 -0.34 0.68 16 38 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.36 6.53 -51.93 -0.34 0.02 16 43 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.09 1.04 7.01 -51.93 -0.36 0.68 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -35.13 395.30 -7.58 -42.71 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.56 Total: 3.66 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.10 Total: 0.15 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.02 Total: -60.50 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.13 -7.58 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666258829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.656 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds