Wall clock time and date at job start Tue Mar 31 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30377 * 125.96708 * 2 1 4 4 N 1.39914 * 109.02612 * 180.28104 * 3 2 1 5 5 C 1.46497 * 125.74589 * 179.76024 * 4 3 2 6 6 C 1.34417 * 108.50982 * 359.73520 * 4 3 2 7 7 F 1.35102 * 126.34398 * 180.02562 * 6 4 3 8 8 C 1.38503 * 107.31506 * 0.02562 * 6 4 3 9 9 C 1.47163 * 126.45915 * 179.97438 * 8 6 4 10 10 O 1.21634 * 120.00353 * 90.01849 * 9 8 6 11 11 N 1.34787 * 119.99717 * 270.01906 * 9 8 6 12 12 C 1.46924 * 120.63033 * 359.72152 * 11 9 8 13 13 C 1.53187 * 108.77642 * 126.66473 * 12 11 9 14 14 C 1.53041 * 109.31211 * 54.63373 * 13 12 11 15 15 C 1.52994 * 109.46090 * 178.61149 * 14 13 12 16 16 C 1.52993 * 109.47626 * 295.07096 * 15 14 13 17 17 N 1.46503 * 109.47649 * 179.97438 * 16 15 14 18 18 C 1.36938 * 120.00068 * 180.02562 * 17 16 15 19 19 H 1.07991 * 119.99930 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00471 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47162 * 120.00368 * 22 20 18 25 25 H 1.48504 * 109.46979 * 239.99955 * 22 20 18 26 26 C 1.53038 * 109.53768 * 298.63806 * 14 13 12 27 27 C 1.46926 * 120.62918 * 180.02562 * 11 9 8 28 28 H 1.08999 * 109.46987 * 270.14891 * 1 2 3 29 29 H 1.09001 * 109.46904 * 30.15363 * 1 2 3 30 30 H 1.09005 * 109.46923 * 150.14809 * 1 2 3 31 31 H 1.08999 * 109.46897 * 269.97126 * 5 4 3 32 32 H 1.08996 * 109.47635 * 29.97356 * 5 4 3 33 33 H 1.09002 * 109.47145 * 149.97512 * 5 4 3 34 34 H 1.09003 * 109.58516 * 246.45674 * 12 11 9 35 35 H 1.09002 * 109.58479 * 6.87832 * 12 11 9 36 36 H 1.08999 * 109.49975 * 294.68379 * 13 12 11 37 37 H 1.08998 * 109.50042 * 174.58459 * 13 12 11 38 38 H 1.09007 * 109.44471 * 58.64946 * 14 13 12 39 39 H 1.09007 * 109.46925 * 55.07096 * 15 14 13 40 40 H 1.08998 * 109.47122 * 175.06865 * 15 14 13 41 41 H 1.09004 * 109.47226 * 300.00428 * 16 15 14 42 42 H 1.08998 * 109.47059 * 59.99731 * 16 15 14 43 43 H 0.97000 * 119.99467 * 359.97438 * 17 16 15 44 44 H 0.96998 * 120.00745 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.49677 * 301.40907 * 26 14 13 46 46 H 1.09001 * 109.52131 * 181.33314 * 26 14 13 47 47 H 1.09002 * 109.58798 * 353.11768 * 27 11 9 48 48 H 1.08996 * 109.58781 * 113.40238 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0065 5 6 4.7762 1.5356 -0.0135 6 6 3.6479 -0.6961 -0.0046 7 9 4.7577 -1.4667 -0.0088 8 6 2.3375 -1.1444 0.0025 9 6 1.8931 -2.5473 0.0062 10 8 1.7144 -3.1259 1.0611 11 7 1.6842 -3.1912 -1.1593 12 6 1.8899 -2.5039 -2.4415 13 6 2.8416 -3.3405 -3.3023 14 6 2.2892 -4.7617 -3.4325 15 6 3.2194 -5.5908 -4.3202 16 6 3.2121 -5.0204 -5.7398 17 7 4.1033 -5.8140 -6.5897 18 6 4.2591 -5.4883 -7.9106 19 1 3.7247 -4.6468 -8.3260 20 6 5.1039 -6.2399 -8.7157 21 7 5.7549 -7.2659 -8.2096 22 14 5.3160 -5.7962 -10.5178 23 1 4.4804 -4.6109 -10.8373 24 1 6.7424 -5.4825 -10.7858 25 1 4.8940 -6.9422 -11.3627 26 6 2.1995 -5.4050 -2.0468 27 6 1.2400 -4.5916 -1.1718 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8914 -0.5116 31 1 5.0602 1.7542 -1.0429 32 1 4.5283 2.4644 0.5001 33 1 5.6072 1.0487 0.4969 34 1 0.9344 -2.3938 -2.9545 35 1 2.3267 -1.5212 -2.2634 36 1 3.8240 -3.3738 -2.8312 37 1 2.9272 -2.8913 -4.2917 38 1 1.2963 -4.7254 -3.8810 39 1 4.2323 -5.5542 -3.9191 40 1 2.8745 -6.6246 -4.3423 41 1 2.1992 -5.0569 -6.1409 42 1 3.5570 -3.9867 -5.7177 43 1 4.5836 -6.5696 -6.2165 44 1 6.3455 -7.7909 -8.7720 45 1 3.1879 -5.4189 -1.5875 46 1 1.8283 -6.4254 -2.1422 47 1 1.2480 -4.9866 -0.1559 48 1 0.2307 -4.6512 -1.5791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666258829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:04 Heat of formation + Delta-G solvation = -19.530720 kcal Electronic energy + Delta-G solvation = -29739.738409 eV Core-core repulsion = 25552.073159 eV Total energy + Delta-G solvation = -4187.665250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.50136 -42.59452 -40.94770 -38.94061 -36.87338 -35.32876 -34.96188 -33.08871 -32.29076 -31.37815 -30.51957 -29.81024 -27.36615 -26.41529 -24.83566 -24.31395 -23.48792 -22.35194 -21.80146 -21.28335 -20.23547 -19.14791 -18.84685 -18.23818 -17.72642 -17.21328 -17.16125 -16.66942 -16.11648 -15.79956 -15.72823 -15.50023 -15.43128 -15.28664 -14.83980 -14.74442 -14.52056 -14.44021 -14.28014 -14.13137 -13.82719 -13.69521 -13.30113 -13.22999 -13.04614 -13.02582 -12.87052 -12.50123 -12.29856 -12.21111 -12.06198 -12.05529 -11.95773 -11.63104 -11.39830 -11.19102 -11.09802 -10.89431 -10.45398 -9.85922 -9.71266 -8.98825 -7.95439 -5.24445 0.18413 0.84285 1.10166 1.34202 1.47287 1.48336 1.58559 2.01906 2.56133 2.71542 3.18768 3.38498 3.59784 3.69349 3.72614 3.76880 3.92862 4.06011 4.12628 4.20888 4.22256 4.27623 4.34319 4.41866 4.50046 4.56338 4.59678 4.63876 4.71443 4.75262 4.77084 4.85464 4.87130 4.91256 4.97787 5.06520 5.09469 5.19661 5.29518 5.31421 5.40356 5.49745 5.54572 5.57173 5.59206 6.21548 6.27623 6.28366 7.01611 7.32944 8.10855 8.32593 9.28739 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002411 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.252725 B =11609.394497 C =12499.698842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.131 3.869 3 N -0.280 5.280 4 N -0.368 5.368 5 C 0.080 3.920 6 C 0.283 3.717 7 F -0.092 7.092 8 C -0.305 4.305 9 C 0.601 3.399 10 O -0.573 6.573 11 N -0.594 5.594 12 C 0.116 3.884 13 C -0.129 4.129 14 C -0.072 4.072 15 C -0.109 4.109 16 C 0.151 3.849 17 N -0.751 5.751 18 C -0.243 4.243 19 H 0.077 0.923 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.293 1.293 26 C -0.122 4.122 27 C 0.113 3.887 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 18.589 19.589 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 N -0.103 5.103 4 N -0.152 5.152 5 C -0.058 4.058 6 C 0.135 3.865 7 F -0.072 7.072 8 C -0.321 4.321 9 C 0.387 3.613 10 O -0.453 6.453 11 N -0.326 5.326 12 C -0.006 4.006 13 C -0.167 4.167 14 C -0.091 4.091 15 C -0.147 4.147 16 C 0.026 3.974 17 N -0.394 5.394 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.160 4.160 27 C -0.008 4.008 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.203 0.797 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.178 19.743 19.979 29.875 hybrid contribution 1.455 -1.487 -0.863 2.253 sum -8.723 18.256 19.116 27.835 Atomic orbital electron populations 1.20449 0.83215 1.05151 1.04770 1.22605 0.98400 0.87096 0.95473 1.77295 0.84592 1.21353 1.27053 1.49021 1.07999 1.02353 1.55870 1.22492 0.82616 0.94741 1.05990 1.17892 0.83169 0.82697 1.02766 1.91666 1.49862 1.71816 1.93818 1.19634 0.91083 0.95372 1.26019 1.17264 0.76218 0.84506 0.83264 1.90762 1.53720 1.68571 1.32259 1.48176 1.65415 1.13193 1.05793 1.21810 1.00848 0.95397 0.82505 1.21994 0.98523 0.95762 1.00404 1.21005 0.99550 0.93931 0.94610 1.21630 0.99520 0.99517 0.94002 1.20888 0.92573 0.93974 0.90007 1.42689 1.53364 1.35703 1.07629 1.19706 1.20427 1.10083 0.87315 0.90479 1.25616 1.00357 0.98447 1.02746 1.69830 1.33971 1.21922 1.36633 0.85052 0.77173 0.77523 0.79905 1.18781 1.22075 1.21993 1.21919 0.99636 0.99933 0.94558 1.21746 0.98461 0.79241 1.01401 0.88830 0.88051 0.89516 0.88150 0.86478 0.87681 0.88501 0.90185 0.93081 0.89960 0.89310 0.93337 0.92207 0.96050 0.95786 0.79698 0.94020 0.93022 0.89181 0.90011 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.28 71.24 0.73 -0.21 16 2 C 0.13 2.46 7.26 43.55 0.32 2.78 16 3 N -0.28 -5.40 12.49 -46.64 -0.58 -5.98 16 4 N -0.37 -6.51 3.98 -368.87 -1.47 -7.98 16 5 C 0.08 0.68 11.43 127.77 1.46 2.14 16 6 C 0.28 6.16 8.59 84.36 0.72 6.88 16 7 F -0.09 -2.11 17.31 44.97 0.78 -1.33 16 8 C -0.30 -6.90 3.87 -20.09 -0.08 -6.98 16 9 C 0.60 15.34 7.24 86.59 0.63 15.97 16 10 O -0.57 -18.67 16.52 -4.14 -0.07 -18.74 16 11 N -0.59 -12.51 2.97 -823.00 -2.45 -14.95 16 12 C 0.12 2.08 6.34 86.36 0.55 2.62 16 13 C -0.13 -2.78 5.14 30.67 0.16 -2.62 16 14 C -0.07 -1.61 2.15 -10.77 -0.02 -1.63 16 15 C -0.11 -3.35 4.80 30.59 0.15 -3.20 16 16 C 0.15 5.87 6.01 86.38 0.52 6.39 16 17 N -0.75 -38.74 5.60 -343.47 -1.92 -40.66 16 18 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 19 H 0.08 4.14 7.83 -2.92 -0.02 4.12 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 21 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 22 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 C -0.12 -2.51 5.36 30.68 0.16 -2.34 16 27 C 0.11 2.18 6.43 86.37 0.56 2.73 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.97 8.01 -2.38 -0.02 0.95 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.45 6.25 -2.39 -0.01 1.43 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.84 6.50 -2.39 -0.02 1.82 16 38 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.02 0.92 6.53 -2.39 -0.02 0.90 16 43 H 0.37 20.51 7.67 -92.71 -0.71 19.79 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.08 1.80 7.01 -2.39 -0.02 1.78 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.73 395.30 4.02 -71.72 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.26 Total: 24.28 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 7.16 Total: 5.50 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -6.14 Total: -129.62 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.07 Total: -18.74 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.73 4.02 -71.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666258829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.185 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds