Wall clock time and date at job start Tue Mar 31 2020 21:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00062 * 2 1 4 4 C 1.53004 * 109.46769 * 54.60006 * 3 2 1 5 5 C 1.50699 * 109.47374 * 174.59990 * 3 2 1 6 6 O 1.21279 * 119.99714 * 144.99925 * 5 3 2 7 7 N 1.34777 * 119.99939 * 325.27729 * 5 3 2 8 8 C 1.46500 * 119.99916 * 359.72381 * 7 5 3 9 9 C 1.46495 * 119.99755 * 179.72221 * 7 5 3 10 10 H 1.08998 * 109.47666 * 0.02562 * 9 7 5 11 11 C 1.53001 * 109.47037 * 239.99558 * 9 7 5 12 12 C 1.53003 * 109.47094 * 120.00055 * 9 7 5 13 13 N 1.46501 * 109.47171 * 304.99754 * 12 9 7 14 14 C 1.36935 * 120.00201 * 179.97438 * 13 12 9 15 15 H 1.08004 * 119.99647 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99787 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00081 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47263 * 89.99782 * 18 16 14 20 20 H 1.48501 * 109.47170 * 209.99499 * 18 16 14 21 21 H 1.48497 * 109.47332 * 329.99592 * 18 16 14 22 22 C 1.50701 * 109.46953 * 294.60188 * 3 2 1 23 23 C 1.38216 * 120.01439 * 355.15783 * 22 3 2 24 24 C 1.38224 * 120.02712 * 179.72251 * 23 22 3 25 25 C 1.38268 * 120.04782 * 0.54587 * 24 23 22 26 26 C 1.38176 * 120.02698 * 359.72876 * 25 24 23 27 27 C 1.38442 * 120.01184 * 175.42653 * 22 3 2 28 28 F 1.35102 * 120.02437 * 359.97438 * 27 22 3 29 29 H 1.09001 * 109.46912 * 51.41913 * 1 2 3 30 30 H 1.08999 * 109.46796 * 171.41368 * 1 2 3 31 31 H 1.08994 * 109.47262 * 291.41885 * 1 2 3 32 32 H 1.08999 * 109.46833 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47484 * 300.00006 * 4 3 2 34 34 H 1.08994 * 109.47290 * 60.00234 * 4 3 2 35 35 H 1.09000 * 109.47222 * 90.00272 * 8 7 5 36 36 H 1.08998 * 109.47094 * 210.00124 * 8 7 5 37 37 H 1.08998 * 109.47426 * 329.99780 * 8 7 5 38 38 H 1.09004 * 109.46622 * 60.00631 * 11 9 7 39 39 H 1.09005 * 109.47027 * 179.97438 * 11 9 7 40 40 H 1.08998 * 109.47640 * 300.00307 * 11 9 7 41 41 H 1.08999 * 109.46877 * 64.99746 * 12 9 7 42 42 H 1.08997 * 109.47422 * 184.99636 * 12 9 7 43 43 H 0.97004 * 119.99786 * 0.02562 * 13 12 9 44 44 H 0.96998 * 119.99835 * 179.97438 * 17 16 14 45 45 H 1.08007 * 119.98698 * 359.97438 * 23 22 3 46 46 H 1.08001 * 119.97503 * 180.24903 * 24 23 22 47 47 H 1.08000 * 119.98376 * 179.74499 * 25 24 23 48 48 H 1.07994 * 120.01235 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4543 2.1112 1.1759 5 6 3.5068 1.1891 0.1337 6 8 4.2298 1.9764 -0.4393 7 7 4.0418 0.2068 0.8855 8 6 3.1684 -0.7442 1.5776 9 6 5.4967 0.0900 1.0105 10 1 5.9758 0.8788 0.4307 11 6 5.9459 -1.2748 0.4846 12 6 5.8947 0.2257 2.4816 13 7 5.3612 1.4802 3.0181 14 6 5.5913 1.8188 4.3249 15 1 6.1664 1.1612 4.9599 16 6 5.0862 3.0077 4.8330 17 7 5.3077 3.3335 6.0889 18 14 4.0920 4.1454 3.7345 19 1 2.6538 3.7859 3.8220 20 1 4.2789 5.5501 4.1783 21 1 4.5528 4.0046 2.3298 22 6 1.6742 2.0050 -1.2919 23 6 0.9954 1.3287 -2.2880 24 6 0.6820 1.9717 -3.4707 25 6 1.0570 3.2886 -3.6632 26 6 1.7406 3.9650 -2.6711 27 6 2.0501 3.3235 -1.4835 28 9 2.7179 3.9840 -0.5125 29 1 -0.3633 0.6409 -0.8034 30 1 -0.3633 -1.0162 -0.1534 31 1 -0.3633 0.3753 0.9566 32 1 1.8973 3.1071 1.1756 33 1 0.3719 2.1955 1.0792 34 1 1.6973 1.6053 2.1102 35 1 2.9729 -1.5973 0.9278 36 1 3.6555 -1.0870 2.4904 37 1 2.2270 -0.2561 1.8295 38 1 5.6624 -1.3715 -0.5635 39 1 7.0285 -1.3615 0.5772 40 1 5.4669 -2.0635 1.0648 41 1 5.4884 -0.6131 3.0468 42 1 6.9815 0.2278 2.5654 43 1 4.8443 2.0706 2.4479 44 1 4.9551 4.1644 6.4439 45 1 0.7062 0.2985 -2.1406 46 1 0.1481 1.4436 -4.2469 47 1 0.8152 3.7887 -4.5894 48 1 2.0329 4.9936 -2.8215 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666921902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:41 Heat of formation + Delta-G solvation = -55.294255 kcal Electronic energy + Delta-G solvation = -32375.175824 eV Core-core repulsion = 28153.667000 eV Total energy + Delta-G solvation = -4221.508824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.78514 -40.90074 -39.06173 -37.79394 -36.51146 -34.04815 -32.69811 -31.83993 -30.89521 -30.46246 -29.40067 -27.53956 -26.63089 -25.88955 -24.16289 -22.95254 -22.78516 -21.90097 -20.42650 -19.17148 -17.93893 -17.56772 -17.50104 -16.66132 -16.25709 -15.90177 -15.72393 -15.45504 -15.03932 -14.93103 -14.73038 -14.31956 -14.30151 -13.82596 -13.45893 -13.26482 -13.06419 -12.82082 -12.68301 -12.64406 -12.51195 -12.41528 -12.31331 -12.05771 -11.99714 -11.94671 -11.77396 -11.62233 -11.44435 -10.96300 -10.88764 -10.74160 -10.50038 -10.05666 -9.87556 -9.63597 -9.55220 -9.06669 -8.85215 -8.74177 -8.30459 -7.17533 -5.73225 -3.07407 0.95174 1.06639 2.64510 3.11136 3.39413 3.46337 3.49650 3.53020 3.55819 4.18819 4.31520 4.51823 4.64798 4.68076 4.70858 4.84915 5.06352 5.11417 5.12429 5.16935 5.23760 5.38649 5.43415 5.46199 5.54298 5.55061 5.57427 5.61290 5.64242 5.85694 5.87500 5.89445 5.94593 5.96401 6.07640 6.09203 6.11446 6.18770 6.22312 6.29343 6.47454 6.66597 6.72987 6.75536 6.93671 7.62140 8.03242 8.34883 8.46357 9.26290 9.99450 10.20130 11.45062 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.005095 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.194454 B = 5493.916287 C = 6437.388229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.358 6.358 3 C 0.150 3.850 4 C -0.188 4.188 5 C 0.534 3.466 6 O -0.524 6.524 7 N -0.584 5.584 8 C 0.087 3.913 9 C 0.120 3.880 10 H 0.099 0.901 11 C -0.152 4.152 12 C 0.148 3.852 13 N -0.752 5.752 14 C -0.241 4.241 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.935 5.935 18 Si 0.868 3.132 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.269 1.269 22 C -0.141 4.141 23 C -0.080 4.080 24 C -0.141 4.141 25 C -0.086 4.086 26 C -0.163 4.163 27 C 0.144 3.856 28 F -0.120 7.120 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.031 0.969 42 H 0.037 0.963 43 H 0.363 0.637 44 H 0.259 0.741 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 -8.121 -19.646 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.277 6.277 3 C 0.107 3.893 4 C -0.246 4.246 5 C 0.320 3.680 6 O -0.400 6.400 7 N -0.316 5.316 8 C -0.056 4.056 9 C 0.017 3.983 10 H 0.117 0.883 11 C -0.211 4.211 12 C 0.020 3.980 13 N -0.398 5.398 14 C -0.370 4.370 15 H 0.108 0.892 16 C -0.188 4.188 17 N -0.583 5.583 18 Si 0.698 3.302 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.195 1.195 22 C -0.143 4.143 23 C -0.098 4.098 24 C -0.159 4.159 25 C -0.104 4.104 26 C -0.181 4.181 27 C 0.124 3.876 28 F -0.098 7.098 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.196 0.804 44 H 0.069 0.931 45 H 0.158 0.842 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.467 -7.873 -19.653 24.569 hybrid contribution -0.832 1.263 -0.369 1.557 sum -13.299 -6.610 -20.021 24.928 Atomic orbital electron populations 1.23131 0.81186 1.03162 1.01482 1.88168 1.20096 1.24844 1.94594 1.20282 0.91925 0.84419 0.92717 1.22612 1.02099 1.02380 0.97482 1.19703 0.88107 0.81092 0.79143 1.90740 1.60565 1.41534 1.47172 1.47629 1.06926 1.29357 1.47681 1.21881 0.94403 0.92589 0.96680 1.21505 0.79522 0.98747 0.98526 0.88270 1.22017 1.01666 0.96452 1.00925 1.20988 0.97072 0.89872 0.90054 1.42661 1.65228 1.21095 1.10789 1.19053 1.28467 1.03803 0.85716 0.89176 1.24603 1.00719 0.97710 0.95787 1.69699 1.50491 1.25022 1.13063 0.86763 0.80779 0.81280 0.81345 1.20971 1.21683 1.19488 1.20002 1.03312 0.93497 0.97481 1.21020 0.96527 1.00225 0.92017 1.21121 1.02125 0.95173 0.97527 1.21022 0.96517 0.94563 0.98312 1.21162 1.02499 1.01494 0.92984 1.17433 0.93344 0.89953 0.86837 1.91558 1.77371 1.80145 1.60736 0.92587 0.89000 0.93136 0.89657 0.90613 0.89746 0.92625 0.91052 0.90359 0.92621 0.91293 0.92141 0.95161 0.94499 0.80394 0.93147 0.84196 0.85312 0.85100 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.05 101.05 0.91 0.97 16 2 O -0.36 -4.36 6.07 -35.23 -0.21 -4.57 16 3 C 0.15 2.26 0.43 -92.92 -0.04 2.22 16 4 C -0.19 -2.95 7.62 37.16 0.28 -2.67 16 5 C 0.53 9.87 6.23 -10.99 -0.07 9.80 16 6 O -0.52 -11.31 13.40 5.56 0.07 -11.23 16 7 N -0.58 -9.94 2.24 -173.94 -0.39 -10.33 16 8 C 0.09 1.23 8.08 59.85 0.48 1.72 16 9 C 0.12 2.07 2.80 -67.93 -0.19 1.88 16 10 H 0.10 1.93 6.90 -51.93 -0.36 1.57 16 11 C -0.15 -1.98 9.19 37.16 0.34 -1.64 16 12 C 0.15 2.96 5.50 -4.04 -0.02 2.94 16 13 N -0.75 -18.88 5.24 -59.91 -0.31 -19.20 16 14 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 15 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 16 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 17 N -0.93 -30.10 13.97 55.49 0.78 -29.33 16 18 Si 0.87 23.49 27.74 -169.99 -4.71 18.78 16 19 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 21 H -0.27 -7.36 6.52 56.52 0.37 -6.99 16 22 C -0.14 -2.01 4.29 -104.55 -0.45 -2.46 16 23 C -0.08 -0.89 7.64 -39.59 -0.30 -1.19 16 24 C -0.14 -1.31 10.04 -39.58 -0.40 -1.71 16 25 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 26 C -0.16 -1.99 10.03 -39.52 -0.40 -2.38 16 27 C 0.14 2.23 6.18 -39.42 -0.24 1.99 16 28 F -0.12 -2.27 13.15 2.25 0.03 -2.24 16 29 H 0.06 0.45 5.14 -51.93 -0.27 0.19 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.08 1.56 5.96 -51.93 -0.31 1.25 16 33 H 0.08 0.95 6.68 -51.93 -0.35 0.60 16 34 H 0.08 1.39 6.84 -51.93 -0.36 1.03 16 35 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.07 1.04 6.53 -51.93 -0.34 0.70 16 37 H 0.08 1.10 4.53 -51.93 -0.24 0.86 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 41 H 0.03 0.59 6.88 -51.93 -0.36 0.23 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.36 9.39 4.93 -40.82 -0.20 9.19 16 44 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 45 H 0.14 1.31 5.66 -52.48 -0.30 1.01 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 48 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -35.90 371.21 -6.68 -42.58 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.78 Total: 8.77 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.74 Total: 1.19 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.07 Total: -58.86 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.14 Total: -15.81 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.03 Total: -2.24 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.71 Total: 18.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.90 -6.68 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666921902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.717 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds