Wall clock time and date at job start Tue Mar 31 2020 21:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00062 * 2 1 4 4 C 1.53004 * 109.46769 * 54.60006 * 3 2 1 5 5 C 1.50699 * 109.47374 * 174.59990 * 3 2 1 6 6 O 1.21279 * 119.99714 * 144.99925 * 5 3 2 7 7 N 1.34777 * 119.99939 * 325.27729 * 5 3 2 8 8 C 1.46500 * 119.99916 * 359.72381 * 7 5 3 9 9 C 1.46495 * 119.99755 * 179.72221 * 7 5 3 10 10 H 1.08998 * 109.47666 * 0.02562 * 9 7 5 11 11 C 1.53001 * 109.47037 * 239.99558 * 9 7 5 12 12 C 1.53003 * 109.47094 * 120.00055 * 9 7 5 13 13 N 1.46501 * 109.47171 * 304.99754 * 12 9 7 14 14 C 1.36935 * 120.00201 * 179.97438 * 13 12 9 15 15 H 1.08004 * 119.99647 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99787 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00081 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47263 * 89.99782 * 18 16 14 20 20 H 1.48501 * 109.47170 * 209.99499 * 18 16 14 21 21 H 1.48497 * 109.47332 * 329.99592 * 18 16 14 22 22 C 1.50701 * 109.46953 * 294.60188 * 3 2 1 23 23 C 1.38216 * 120.01439 * 355.15783 * 22 3 2 24 24 C 1.38224 * 120.02712 * 179.72251 * 23 22 3 25 25 C 1.38268 * 120.04782 * 0.54587 * 24 23 22 26 26 C 1.38176 * 120.02698 * 359.72876 * 25 24 23 27 27 C 1.38442 * 120.01184 * 175.42653 * 22 3 2 28 28 F 1.35102 * 120.02437 * 359.97438 * 27 22 3 29 29 H 1.09001 * 109.46912 * 51.41913 * 1 2 3 30 30 H 1.08999 * 109.46796 * 171.41368 * 1 2 3 31 31 H 1.08994 * 109.47262 * 291.41885 * 1 2 3 32 32 H 1.08999 * 109.46833 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47484 * 300.00006 * 4 3 2 34 34 H 1.08994 * 109.47290 * 60.00234 * 4 3 2 35 35 H 1.09000 * 109.47222 * 90.00272 * 8 7 5 36 36 H 1.08998 * 109.47094 * 210.00124 * 8 7 5 37 37 H 1.08998 * 109.47426 * 329.99780 * 8 7 5 38 38 H 1.09004 * 109.46622 * 60.00631 * 11 9 7 39 39 H 1.09005 * 109.47027 * 179.97438 * 11 9 7 40 40 H 1.08998 * 109.47640 * 300.00307 * 11 9 7 41 41 H 1.08999 * 109.46877 * 64.99746 * 12 9 7 42 42 H 1.08997 * 109.47422 * 184.99636 * 12 9 7 43 43 H 0.97004 * 119.99786 * 0.02562 * 13 12 9 44 44 H 0.96998 * 119.99835 * 179.97438 * 17 16 14 45 45 H 1.08007 * 119.98698 * 359.97438 * 23 22 3 46 46 H 1.08001 * 119.97503 * 180.24903 * 24 23 22 47 47 H 1.08000 * 119.98376 * 179.74499 * 25 24 23 48 48 H 1.07994 * 120.01235 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4543 2.1112 1.1759 5 6 3.5068 1.1891 0.1337 6 8 4.2298 1.9764 -0.4393 7 7 4.0418 0.2068 0.8855 8 6 3.1684 -0.7442 1.5776 9 6 5.4967 0.0900 1.0105 10 1 5.9758 0.8788 0.4307 11 6 5.9459 -1.2748 0.4846 12 6 5.8947 0.2257 2.4816 13 7 5.3612 1.4802 3.0181 14 6 5.5913 1.8188 4.3249 15 1 6.1664 1.1612 4.9599 16 6 5.0862 3.0077 4.8330 17 7 5.3077 3.3335 6.0889 18 14 4.0920 4.1454 3.7345 19 1 2.6538 3.7859 3.8220 20 1 4.2789 5.5501 4.1783 21 1 4.5528 4.0046 2.3298 22 6 1.6742 2.0050 -1.2919 23 6 0.9954 1.3287 -2.2880 24 6 0.6820 1.9717 -3.4707 25 6 1.0570 3.2886 -3.6632 26 6 1.7406 3.9650 -2.6711 27 6 2.0501 3.3235 -1.4835 28 9 2.7179 3.9840 -0.5125 29 1 -0.3633 0.6409 -0.8034 30 1 -0.3633 -1.0162 -0.1534 31 1 -0.3633 0.3753 0.9566 32 1 1.8973 3.1071 1.1756 33 1 0.3719 2.1955 1.0792 34 1 1.6973 1.6053 2.1102 35 1 2.9729 -1.5973 0.9278 36 1 3.6555 -1.0870 2.4904 37 1 2.2270 -0.2561 1.8295 38 1 5.6624 -1.3715 -0.5635 39 1 7.0285 -1.3615 0.5772 40 1 5.4669 -2.0635 1.0648 41 1 5.4884 -0.6131 3.0468 42 1 6.9815 0.2278 2.5654 43 1 4.8443 2.0706 2.4479 44 1 4.9551 4.1644 6.4439 45 1 0.7062 0.2985 -2.1406 46 1 0.1481 1.4436 -4.2469 47 1 0.8152 3.7887 -4.5894 48 1 2.0329 4.9936 -2.8215 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666921902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:40 Heat of formation + Delta-G solvation = -79.180670 kcal Electronic energy + Delta-G solvation = -32376.211616 eV Core-core repulsion = 28153.667000 eV Total energy + Delta-G solvation = -4222.544617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.96298 -42.03369 -40.16860 -38.72839 -38.00996 -35.95453 -33.88697 -33.47452 -32.26373 -31.67383 -30.41497 -28.38799 -27.81115 -27.63722 -25.22057 -24.27154 -23.77266 -23.57810 -21.65984 -20.56469 -19.58808 -18.98135 -18.63956 -17.77867 -17.36470 -17.03588 -16.85184 -16.73034 -16.57322 -16.16593 -15.92459 -15.87036 -15.34967 -15.22301 -14.83202 -14.62583 -14.39567 -14.20288 -13.99086 -13.82150 -13.79468 -13.71815 -13.57586 -13.40092 -13.16491 -13.06969 -12.91123 -12.88885 -12.52841 -12.44554 -12.41917 -12.31752 -11.93270 -11.86707 -11.80635 -11.10312 -10.95734 -10.72777 -9.95528 -9.68989 -9.61376 -9.35682 -8.11792 -5.41690 0.07636 0.19870 1.19562 1.25969 1.35267 1.35459 1.89795 2.35496 2.51745 2.59301 3.20174 3.21413 3.33371 3.40369 3.59315 3.66185 3.82441 3.94642 4.07105 4.20618 4.26259 4.29735 4.32723 4.34635 4.36879 4.43887 4.50891 4.60973 4.73362 4.78058 4.79936 4.83678 4.87607 4.89886 4.94827 5.05654 5.06612 5.12472 5.14226 5.27490 5.29050 5.38834 5.56575 5.69685 5.87232 5.90362 6.13622 6.31988 6.99199 7.02080 7.77254 7.94973 9.09801 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.005095 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.194454 B = 5493.916287 C = 6437.388229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.359 6.359 3 C 0.161 3.839 4 C -0.187 4.187 5 C 0.520 3.480 6 O -0.566 6.566 7 N -0.587 5.587 8 C 0.086 3.914 9 C 0.124 3.876 10 H 0.071 0.929 11 C -0.139 4.139 12 C 0.144 3.856 13 N -0.758 5.758 14 C -0.223 4.223 15 H 0.071 0.929 16 C -0.048 4.048 17 N -0.975 5.975 18 Si 0.927 3.073 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.159 4.159 23 C -0.080 4.080 24 C -0.128 4.128 25 C -0.078 4.078 26 C -0.173 4.173 27 C 0.098 3.902 28 F -0.154 7.154 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.359 0.641 44 H 0.258 0.742 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.168 0.832 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 -10.415 -22.652 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.278 6.278 3 C 0.118 3.882 4 C -0.244 4.244 5 C 0.307 3.693 6 O -0.446 6.446 7 N -0.318 5.318 8 C -0.055 4.055 9 C 0.020 3.980 10 H 0.089 0.911 11 C -0.197 4.197 12 C 0.017 3.983 13 N -0.403 5.403 14 C -0.354 4.354 15 H 0.088 0.912 16 C -0.240 4.240 17 N -0.626 5.626 18 Si 0.756 3.244 19 H -0.193 1.193 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.161 4.161 23 C -0.098 4.098 24 C -0.145 4.145 25 C -0.095 4.095 26 C -0.192 4.192 27 C 0.078 3.922 28 F -0.132 7.132 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.191 0.809 44 H 0.067 0.933 45 H 0.178 0.822 46 H 0.188 0.812 47 H 0.186 0.814 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.942 -10.227 -22.673 29.016 hybrid contribution -0.068 1.873 0.493 1.938 sum -15.010 -8.354 -22.180 28.055 Atomic orbital electron populations 1.23424 0.79050 1.05337 1.01905 1.88139 1.22210 1.22831 1.94647 1.19899 0.89734 0.85547 0.93022 1.22579 1.03787 1.00576 0.97451 1.20411 0.89728 0.80483 0.78726 1.90704 1.62010 1.42936 1.48911 1.47818 1.07041 1.29516 1.47404 1.22036 0.93824 0.92809 0.96847 1.21405 0.80089 1.00504 0.95989 0.91120 1.21929 1.02657 0.93850 1.01297 1.21230 0.97010 0.87896 0.92120 1.42763 1.65319 1.22849 1.09335 1.19099 1.26436 1.02888 0.87007 0.91151 1.25164 1.02603 0.99379 0.96849 1.69818 1.52438 1.25739 1.14616 0.85852 0.80364 0.79384 0.78805 1.19331 1.21936 1.20799 1.20080 1.04742 0.93230 0.98042 1.21329 0.95672 1.01012 0.91779 1.21631 1.00526 0.94943 0.97428 1.21489 0.94631 0.94834 0.98581 1.21426 1.02953 1.02144 0.92655 1.17996 0.95347 0.91180 0.87639 1.91465 1.78576 1.80893 1.62283 0.91723 0.85908 0.93157 0.92859 0.87755 0.91127 0.89769 0.91508 0.90289 0.91902 0.89920 0.90310 0.93560 0.94276 0.80886 0.93269 0.82182 0.81242 0.81440 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.05 113.37 1.03 0.99 16 2 O -0.36 -7.89 6.07 -148.98 -0.90 -8.80 16 3 C 0.16 4.79 0.43 -12.28 -0.01 4.79 16 4 C -0.19 -5.91 7.62 71.98 0.55 -5.36 16 5 C 0.52 19.45 6.23 87.66 0.55 19.99 16 6 O -0.57 -25.54 13.40 -3.02 -0.04 -25.58 16 7 N -0.59 -19.69 2.24 -822.61 -1.85 -21.54 16 8 C 0.09 2.30 8.08 127.77 1.03 3.33 16 9 C 0.12 4.22 2.80 44.99 0.13 4.34 16 10 H 0.07 2.83 6.90 -2.39 -0.02 2.82 16 11 C -0.14 -3.31 9.19 71.98 0.66 -2.65 16 12 C 0.14 5.73 5.50 86.38 0.48 6.20 16 13 N -0.76 -38.69 5.24 -343.45 -1.80 -40.49 16 14 C -0.22 -13.32 10.47 84.03 0.88 -12.44 16 15 H 0.07 4.43 8.06 -2.91 -0.02 4.41 16 16 C -0.05 -2.97 5.50 84.86 0.47 -2.51 16 17 N -0.97 -64.34 13.97 21.65 0.30 -64.04 16 18 Si 0.93 50.68 27.74 68.60 1.90 52.58 16 19 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.29 -15.98 7.11 99.48 0.71 -15.28 16 21 H -0.28 -15.85 6.52 99.48 0.65 -15.20 16 22 C -0.16 -4.41 4.29 -19.82 -0.09 -4.50 16 23 C -0.08 -1.53 7.64 22.26 0.17 -1.36 16 24 C -0.13 -1.80 10.04 22.27 0.22 -1.58 16 25 C -0.08 -1.23 10.04 22.26 0.22 -1.00 16 26 C -0.17 -4.11 10.03 22.31 0.22 -3.89 16 27 C 0.10 3.09 6.18 22.38 0.14 3.23 16 28 F -0.15 -6.22 13.15 44.97 0.59 -5.63 16 29 H 0.06 0.81 5.14 -2.39 -0.01 0.80 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.72 6.86 -2.39 -0.02 0.70 16 32 H 0.05 2.04 5.96 -2.39 -0.01 2.02 16 33 H 0.10 2.55 6.68 -2.39 -0.02 2.53 16 34 H 0.07 2.35 6.84 -2.39 -0.02 2.33 16 35 H 0.08 1.76 7.88 -2.39 -0.02 1.74 16 36 H 0.07 1.82 6.53 -2.39 -0.02 1.81 16 37 H 0.08 2.10 4.53 -2.39 -0.01 2.09 16 38 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.08 1.60 7.67 -2.39 -0.02 1.58 16 41 H 0.05 1.73 6.88 -2.39 -0.02 1.71 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.36 19.05 4.93 -92.71 -0.46 18.59 16 44 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 45 H 0.16 2.31 5.66 -2.91 -0.02 2.29 16 46 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -82.79 371.21 5.33 -77.46 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.48 Total: 28.43 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.65 Total: 7.60 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -3.34 Total: -126.06 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.95 Total: -34.38 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.59 Total: -5.63 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.90 Total: 52.58 kcal Total: -82.79 5.33 -77.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666921902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.722 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds