Wall clock time and date at job start Tue Mar 31 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86808 * 120.00056 * 2 1 4 4 H 1.48495 * 109.47042 * 89.99647 * 3 2 1 5 5 H 1.48496 * 109.47075 * 210.00140 * 3 2 1 6 6 H 1.48497 * 109.47018 * 329.99741 * 3 2 1 7 7 C 1.38813 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00424 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00308 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47483 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47255 * 174.86142 * 11 10 9 13 13 H 1.09001 * 109.58457 * 298.89022 * 12 11 10 14 14 C 1.53186 * 109.58562 * 59.17376 * 12 11 10 15 15 C 1.53044 * 109.31377 * 174.42419 * 14 12 11 16 16 C 1.53040 * 109.53477 * 298.63386 * 15 14 12 17 17 C 1.53192 * 109.31551 * 61.36467 * 16 15 14 18 18 N 1.46926 * 108.77526 * 305.36374 * 17 16 15 19 19 C 1.34771 * 120.63355 * 233.60977 * 18 17 16 20 20 O 1.21602 * 120.00110 * 181.53657 * 19 18 17 21 21 C 1.47429 * 119.99797 * 1.52929 * 19 18 17 22 22 C 1.41288 * 126.41334 * 332.12863 * 21 19 18 23 23 N 1.30451 * 108.01931 * 179.85376 * 22 21 19 24 24 N 1.39934 * 108.89847 * 0.41063 * 23 22 21 25 25 C 1.46507 * 125.75624 * 179.73618 * 24 23 22 26 26 C 1.52998 * 109.46750 * 305.00123 * 25 24 23 27 27 F 1.39904 * 109.46641 * 179.97438 * 26 25 24 28 28 C 1.34261 * 108.49131 * 359.73387 * 24 23 22 29 29 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99693 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47067 * 300.00316 * 10 9 7 32 32 H 1.09005 * 109.46765 * 59.99641 * 10 9 7 33 33 H 1.09000 * 109.47400 * 294.86473 * 11 10 9 34 34 H 1.09000 * 109.46982 * 54.85998 * 11 10 9 35 35 H 1.09004 * 109.49651 * 294.37373 * 14 12 11 36 36 H 1.09000 * 109.49986 * 54.47067 * 14 12 11 37 37 H 1.08992 * 109.45973 * 58.65135 * 15 14 12 38 38 H 1.09003 * 109.45961 * 178.61627 * 15 14 12 39 39 H 1.09002 * 109.49735 * 181.31600 * 16 15 14 40 40 H 1.08998 * 109.49767 * 301.41310 * 16 15 14 41 41 H 1.09004 * 109.58726 * 65.14969 * 17 16 15 42 42 H 1.08999 * 109.58810 * 185.43381 * 17 16 15 43 43 H 1.07993 * 125.99211 * 359.97438 * 22 21 19 44 44 H 1.09001 * 109.46993 * 64.99890 * 25 24 23 45 45 H 1.08991 * 109.46987 * 184.99981 * 25 24 23 46 46 H 1.09001 * 109.47182 * 299.99651 * 26 25 24 47 47 H 1.09001 * 109.47557 * 60.00164 * 26 25 24 48 48 H 1.07997 * 126.29050 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8245 -6.1410 -0.1280 13 1 2.3737 -6.1558 -1.0694 14 6 2.8043 -6.2858 1.0406 15 6 3.4601 -7.6674 0.9830 16 6 2.3861 -8.7496 1.1161 17 6 1.4015 -8.6327 -0.0516 18 7 0.8749 -7.2616 -0.0907 19 6 -0.4538 -7.0360 -0.0922 20 8 -0.8772 -5.8977 -0.1530 21 6 -1.3939 -8.1694 -0.0204 22 6 -1.1590 -9.4844 -0.4806 23 7 -2.2258 -10.1942 -0.2360 24 7 -3.1837 -9.3770 0.3747 25 6 -4.5208 -9.7972 0.8013 26 6 -5.2619 -10.4200 -0.3835 27 9 -6.5385 -10.8217 0.0241 28 6 -2.6707 -8.1430 0.5037 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 -0.8895 32 1 2.6848 -3.7144 0.8906 33 1 0.4997 -4.8149 0.9338 34 1 0.3779 -4.7117 -0.8390 35 1 3.5722 -5.5154 0.9691 36 1 2.2661 -6.1775 1.9822 37 1 3.9774 -7.7845 0.0308 38 1 4.1760 -7.7639 1.7993 39 1 2.8563 -9.7328 1.0985 40 1 1.8519 -8.6181 2.0570 41 1 1.9160 -8.8533 -0.9869 42 1 0.5819 -9.3372 0.0896 43 1 -0.2541 -9.8402 -0.9505 44 1 -4.4326 -10.5320 1.6016 45 1 -5.0756 -8.9314 1.1625 46 1 -5.3500 -9.6852 -1.1838 47 1 -4.7070 -11.2859 -0.7447 48 1 -3.1659 -7.2872 0.9381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667267945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:23 Heat of formation + Delta-G solvation = 29.427809 kcal Electronic energy + Delta-G solvation = -29482.437859 eV Core-core repulsion = 25296.895610 eV Total energy + Delta-G solvation = -4185.542249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.26064 -41.85503 -40.11054 -37.24420 -35.33530 -34.62942 -32.92733 -32.69153 -30.80534 -30.62783 -29.35062 -27.80368 -25.28021 -24.69873 -23.89330 -22.96949 -22.09336 -21.34924 -20.70067 -20.33989 -19.28886 -17.73199 -17.09471 -16.90397 -16.46589 -16.04637 -15.98390 -15.81175 -15.33549 -14.90937 -14.59994 -14.45514 -14.33432 -14.16970 -13.85557 -13.54081 -13.37611 -13.14255 -13.03921 -12.95609 -12.84837 -12.57275 -12.11325 -11.93086 -11.65779 -11.36432 -11.30613 -11.00774 -10.95135 -10.86582 -10.78897 -10.63457 -10.37615 -10.31570 -9.92426 -9.89401 -9.56084 -9.02058 -8.74359 -8.69746 -8.40242 -6.75377 -5.62594 -2.90289 1.26693 1.81053 1.90314 2.97692 3.35395 3.51057 3.55275 3.57674 3.63573 3.98725 4.28776 4.37538 4.44132 4.56249 4.60842 4.68659 4.71357 4.75178 4.78149 4.92613 5.06204 5.07973 5.21379 5.23113 5.24653 5.41077 5.45009 5.62791 5.65970 5.69816 5.82452 5.85159 6.00048 6.02216 6.07437 6.20855 6.30734 6.39053 6.45319 6.47436 6.63865 6.76779 7.13470 7.14786 7.27106 7.55130 7.81072 8.40656 8.56696 9.67064 10.29963 10.64767 11.60469 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.002531 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.548372 B =11059.133753 C =13166.384528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.018 4.018 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.147 3.853 11 C -0.113 4.113 12 C 0.155 3.845 13 H 0.071 0.929 14 C -0.133 4.133 15 C -0.120 4.120 16 C -0.134 4.134 17 C 0.084 3.916 18 N -0.603 5.603 19 C 0.587 3.413 20 O -0.519 6.519 21 C -0.281 4.281 22 C 0.071 3.929 23 N -0.299 5.299 24 N -0.366 5.366 25 C 0.103 3.897 26 C 0.053 3.947 27 F -0.207 7.207 28 C 0.128 3.872 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.202 0.798 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 -28.435 1.486 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.213 4.213 3 Si 0.737 3.263 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.019 3.981 11 C -0.151 4.151 12 C 0.052 3.948 13 H 0.089 0.911 14 C -0.171 4.171 15 C -0.158 4.158 16 C -0.172 4.172 17 C -0.039 4.039 18 N -0.336 5.336 19 C 0.375 3.625 20 O -0.395 6.395 21 C -0.296 4.296 22 C -0.115 4.115 23 N -0.119 5.119 24 N -0.146 5.146 25 C -0.020 4.020 26 C -0.003 4.003 27 F -0.188 7.188 28 C -0.022 4.022 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.219 0.781 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.580 -28.909 1.406 29.304 hybrid contribution 0.604 1.647 0.184 1.764 sum -3.976 -27.262 1.590 27.597 Atomic orbital electron populations 1.69681 1.05057 1.25374 1.58084 1.24744 0.95510 0.97585 1.03491 0.86203 0.78607 0.84078 0.77418 1.21854 1.20853 1.21851 1.19252 0.90945 0.84342 1.42094 0.91338 1.42362 1.06060 0.99901 1.89179 1.20816 0.93756 0.86471 0.97063 1.22230 0.97433 0.90690 1.04762 1.21308 0.89416 0.86116 0.97966 0.91096 1.22061 0.98984 0.97022 0.99052 1.21543 0.97453 0.94805 1.02005 1.21908 0.97223 0.99227 0.98862 1.22398 0.98548 0.84161 0.98824 1.47907 1.05079 1.06941 1.73691 1.17299 0.81378 0.87379 0.76446 1.90957 1.77707 1.21681 1.49167 1.20437 0.97023 0.95899 1.16225 1.24455 0.97131 0.91357 0.98597 1.77143 0.98788 1.18352 1.17581 1.48221 1.12551 1.07275 1.46568 1.22314 0.78567 1.03149 0.97923 1.22160 0.79611 1.01907 0.96604 1.92809 1.41306 1.92436 1.92249 1.23020 0.93470 0.88801 0.96908 0.93658 0.78091 0.97028 0.96761 0.91285 0.89150 0.89999 0.91474 0.91839 0.91857 0.91043 0.91571 0.91325 0.88058 0.78141 0.88116 0.86922 0.89838 0.89020 0.79286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.78 13.06 55.49 0.72 -29.06 16 2 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 3 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 7 C -0.23 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -20.23 5.60 -59.91 -0.34 -20.57 16 10 C 0.15 3.21 5.74 -4.05 -0.02 3.19 16 11 C -0.11 -2.14 3.27 -26.73 -0.09 -2.22 16 12 C 0.15 2.18 3.03 -67.60 -0.20 1.98 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.13 -1.64 4.82 -26.61 -0.13 -1.77 16 15 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 16 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 17 C 0.08 0.69 5.49 -3.71 -0.02 0.67 16 18 N -0.60 -7.42 2.97 -166.48 -0.49 -7.91 16 19 C 0.59 8.35 7.54 -12.52 -0.09 8.25 16 20 O -0.52 -9.59 12.46 5.28 0.07 -9.53 16 21 C -0.28 -3.13 5.73 -105.07 -0.60 -3.73 16 22 C 0.07 0.64 9.71 -16.98 -0.16 0.47 16 23 N -0.30 -2.80 12.33 30.86 0.38 -2.42 16 24 N -0.37 -3.00 3.65 -60.81 -0.22 -3.23 16 25 C 0.10 0.53 6.94 -4.04 -0.03 0.50 16 26 C 0.05 0.29 7.73 37.16 0.29 0.58 16 27 F -0.21 -1.53 17.36 2.25 0.04 -1.49 16 28 C 0.13 1.22 11.35 -16.56 -0.19 1.03 16 29 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 30 H 0.39 11.41 7.67 -40.82 -0.31 11.09 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.01 0.31 6.85 -51.93 -0.36 -0.04 16 33 H 0.07 1.42 7.14 -51.93 -0.37 1.05 16 34 H 0.09 1.93 6.33 -51.93 -0.33 1.60 16 35 H 0.08 1.06 6.87 -51.93 -0.36 0.70 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.71 3.27 -51.93 -0.17 0.54 16 43 H 0.20 1.24 5.89 -52.49 -0.31 0.93 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.11 0.38 8.06 -51.93 -0.42 -0.04 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -36.72 382.93 -8.16 -44.87 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.24 Total: 6.55 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.82 Total: -1.28 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.05 Total: -63.18 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.72 -8.16 -44.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667267945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.300 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds