Wall clock time and date at job start Tue Mar 31 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86808 * 120.00056 * 2 1 4 4 H 1.48495 * 109.47042 * 89.99647 * 3 2 1 5 5 H 1.48496 * 109.47075 * 210.00140 * 3 2 1 6 6 H 1.48497 * 109.47018 * 329.99741 * 3 2 1 7 7 C 1.38813 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00424 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00308 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47483 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47255 * 174.86142 * 11 10 9 13 13 H 1.09001 * 109.58457 * 298.89022 * 12 11 10 14 14 C 1.53186 * 109.58562 * 59.17376 * 12 11 10 15 15 C 1.53044 * 109.31377 * 174.42419 * 14 12 11 16 16 C 1.53040 * 109.53477 * 298.63386 * 15 14 12 17 17 C 1.53192 * 109.31551 * 61.36467 * 16 15 14 18 18 N 1.46926 * 108.77526 * 305.36374 * 17 16 15 19 19 C 1.34771 * 120.63355 * 233.60977 * 18 17 16 20 20 O 1.21602 * 120.00110 * 181.53657 * 19 18 17 21 21 C 1.47429 * 119.99797 * 1.52929 * 19 18 17 22 22 C 1.41288 * 126.41334 * 332.12863 * 21 19 18 23 23 N 1.30451 * 108.01931 * 179.85376 * 22 21 19 24 24 N 1.39934 * 108.89847 * 0.41063 * 23 22 21 25 25 C 1.46507 * 125.75624 * 179.73618 * 24 23 22 26 26 C 1.52998 * 109.46750 * 305.00123 * 25 24 23 27 27 F 1.39904 * 109.46641 * 179.97438 * 26 25 24 28 28 C 1.34261 * 108.49131 * 359.73387 * 24 23 22 29 29 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99693 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47067 * 300.00316 * 10 9 7 32 32 H 1.09005 * 109.46765 * 59.99641 * 10 9 7 33 33 H 1.09000 * 109.47400 * 294.86473 * 11 10 9 34 34 H 1.09000 * 109.46982 * 54.85998 * 11 10 9 35 35 H 1.09004 * 109.49651 * 294.37373 * 14 12 11 36 36 H 1.09000 * 109.49986 * 54.47067 * 14 12 11 37 37 H 1.08992 * 109.45973 * 58.65135 * 15 14 12 38 38 H 1.09003 * 109.45961 * 178.61627 * 15 14 12 39 39 H 1.09002 * 109.49735 * 181.31600 * 16 15 14 40 40 H 1.08998 * 109.49767 * 301.41310 * 16 15 14 41 41 H 1.09004 * 109.58726 * 65.14969 * 17 16 15 42 42 H 1.08999 * 109.58810 * 185.43381 * 17 16 15 43 43 H 1.07993 * 125.99211 * 359.97438 * 22 21 19 44 44 H 1.09001 * 109.46993 * 64.99890 * 25 24 23 45 45 H 1.08991 * 109.46987 * 184.99981 * 25 24 23 46 46 H 1.09001 * 109.47182 * 299.99651 * 26 25 24 47 47 H 1.09001 * 109.47557 * 60.00164 * 26 25 24 48 48 H 1.07997 * 126.29050 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8245 -6.1410 -0.1280 13 1 2.3737 -6.1558 -1.0694 14 6 2.8043 -6.2858 1.0406 15 6 3.4601 -7.6674 0.9830 16 6 2.3861 -8.7496 1.1161 17 6 1.4015 -8.6327 -0.0516 18 7 0.8749 -7.2616 -0.0907 19 6 -0.4538 -7.0360 -0.0922 20 8 -0.8772 -5.8977 -0.1530 21 6 -1.3939 -8.1694 -0.0204 22 6 -1.1590 -9.4844 -0.4806 23 7 -2.2258 -10.1942 -0.2360 24 7 -3.1837 -9.3770 0.3747 25 6 -4.5208 -9.7972 0.8013 26 6 -5.2619 -10.4200 -0.3835 27 9 -6.5385 -10.8217 0.0241 28 6 -2.6707 -8.1430 0.5037 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 -0.8895 32 1 2.6848 -3.7144 0.8906 33 1 0.4997 -4.8149 0.9338 34 1 0.3779 -4.7117 -0.8390 35 1 3.5722 -5.5154 0.9691 36 1 2.2661 -6.1775 1.9822 37 1 3.9774 -7.7845 0.0308 38 1 4.1760 -7.7639 1.7993 39 1 2.8563 -9.7328 1.0985 40 1 1.8519 -8.6181 2.0570 41 1 1.9160 -8.8533 -0.9869 42 1 0.5819 -9.3372 0.0896 43 1 -0.2541 -9.8402 -0.9505 44 1 -4.4326 -10.5320 1.6016 45 1 -5.0756 -8.9314 1.1625 46 1 -5.3500 -9.6852 -1.1838 47 1 -4.7070 -11.2859 -0.7447 48 1 -3.1659 -7.2872 0.9381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667267945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:22 Heat of formation + Delta-G solvation = 4.821946 kcal Electronic energy + Delta-G solvation = -29483.504849 eV Core-core repulsion = 25296.895610 eV Total energy + Delta-G solvation = -4186.609239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.79270 -42.61420 -41.11802 -38.29836 -36.98919 -35.50512 -34.40791 -33.70968 -32.43735 -31.51361 -30.05876 -29.27668 -26.59619 -25.46272 -25.21480 -24.15518 -23.16591 -22.44609 -21.54102 -21.47442 -20.18654 -19.17960 -18.40004 -17.58466 -17.23842 -17.14738 -16.73496 -16.61316 -16.43337 -16.20325 -15.76537 -15.52100 -15.34051 -15.14695 -15.05563 -14.85387 -14.65571 -14.29235 -14.14364 -13.94523 -13.81789 -13.67672 -13.23421 -12.92304 -12.77620 -12.72965 -12.58116 -12.30059 -12.15356 -12.08870 -11.87333 -11.83278 -11.77208 -11.71446 -11.44605 -11.31937 -10.91833 -10.58104 -10.05966 -9.77806 -9.40572 -8.99623 -7.93698 -5.24138 0.49775 1.11842 1.20458 1.45394 1.49344 1.57791 2.01788 2.38454 2.56556 3.12738 3.38478 3.52447 3.62355 3.73465 3.78642 3.89264 3.94356 3.97798 4.06189 4.14915 4.16662 4.18088 4.22636 4.31567 4.45271 4.50006 4.54618 4.61957 4.67001 4.74942 4.77913 4.80135 4.85577 4.96050 5.02736 5.13976 5.21243 5.27898 5.33600 5.42726 5.44853 5.53936 5.55040 5.73066 5.78777 6.27624 6.42551 6.56477 7.31890 7.34911 8.09924 8.34056 9.30607 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.002531 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.548372 B =11059.133753 C =13166.384528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.266 1.266 6 H -0.294 1.294 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.147 3.853 11 C -0.090 4.090 12 C 0.159 3.841 13 H 0.082 0.918 14 C -0.129 4.129 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.078 3.922 18 N -0.600 5.600 19 C 0.580 3.420 20 O -0.577 6.577 21 C -0.304 4.304 22 C 0.081 3.919 23 N -0.309 5.309 24 N -0.359 5.359 25 C 0.098 3.902 26 C 0.057 3.943 27 F -0.217 7.217 28 C 0.128 3.872 29 H 0.251 0.749 30 H 0.370 0.630 31 H 0.019 0.981 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.229 0.771 44 H 0.114 0.886 45 H 0.132 0.868 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -30.727 1.464 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.191 1.191 6 H -0.221 1.221 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.020 3.980 11 C -0.128 4.128 12 C 0.056 3.944 13 H 0.100 0.900 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.168 4.168 17 C -0.043 4.043 18 N -0.332 5.332 19 C 0.370 3.630 20 O -0.458 6.458 21 C -0.319 4.319 22 C -0.105 4.105 23 N -0.129 5.129 24 N -0.138 5.138 25 C -0.023 4.023 26 C 0.001 3.999 27 F -0.198 7.198 28 C -0.023 4.023 29 H 0.060 0.940 30 H 0.201 0.799 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.245 0.755 44 H 0.132 0.868 45 H 0.150 0.850 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.843 -31.297 1.390 31.456 hybrid contribution 0.037 2.272 0.206 2.282 sum -2.806 -29.025 1.596 29.204 Atomic orbital electron populations 1.69874 1.06913 1.26084 1.59584 1.25717 0.96491 1.01533 1.03720 0.85029 0.77655 0.78851 0.77555 1.21161 1.19071 1.22071 1.19717 0.91591 0.85329 1.41219 0.90324 1.42650 1.05591 1.01531 1.89316 1.20999 0.94159 0.85415 0.97391 1.21900 0.96185 0.92599 1.02153 1.21132 0.89447 0.84468 0.99377 0.90021 1.22001 0.98165 0.99457 0.97141 1.21531 0.97816 0.92644 1.03279 1.21911 0.96614 1.00369 0.97896 1.22743 0.99377 0.81760 1.00380 1.47989 1.04322 1.08205 1.72680 1.17787 0.82261 0.87446 0.75475 1.90932 1.78681 1.24082 1.52067 1.20258 0.97254 0.95924 1.18502 1.24792 0.97899 0.90009 0.97843 1.77129 0.99056 1.18739 1.17932 1.48401 1.13161 1.06596 1.45632 1.22567 0.77292 1.04404 0.98020 1.22136 0.79042 1.01953 0.96723 1.92790 1.42074 1.92544 1.92369 1.23205 0.93269 0.89529 0.96300 0.94017 0.79927 0.96284 0.95863 0.93860 0.92064 0.90768 0.93224 0.90416 0.90723 0.87800 0.92841 0.88836 0.86595 0.75504 0.86811 0.85024 0.89760 0.88967 0.78539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.01 13.06 21.65 0.28 -63.72 16 2 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 3 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 4 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 7 C -0.25 -14.90 9.99 84.03 0.84 -14.06 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.75 -43.02 5.60 -343.45 -1.92 -44.94 16 10 C 0.15 6.62 5.74 86.38 0.50 7.12 16 11 C -0.09 -3.59 3.27 30.59 0.10 -3.49 16 12 C 0.16 4.48 3.03 44.97 0.14 4.62 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 14 C -0.13 -3.09 4.82 30.67 0.15 -2.95 16 15 C -0.12 -1.78 5.88 30.62 0.18 -1.60 16 16 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 17 C 0.08 1.07 5.49 86.36 0.47 1.54 16 18 N -0.60 -14.42 2.97 -798.87 -2.37 -16.79 16 19 C 0.58 16.96 7.54 86.67 0.65 17.61 16 20 O -0.58 -22.91 12.46 -4.04 -0.05 -22.96 16 21 C -0.30 -6.64 5.73 -20.15 -0.12 -6.76 16 22 C 0.08 1.29 9.71 85.65 0.83 2.12 16 23 N -0.31 -5.17 12.33 -56.28 -0.69 -5.87 16 24 N -0.36 -5.38 3.65 -346.30 -1.26 -6.64 16 25 C 0.10 0.85 6.94 86.38 0.60 1.45 16 26 C 0.06 0.56 7.73 71.98 0.56 1.12 16 27 F -0.22 -2.98 17.36 44.97 0.78 -2.19 16 28 C 0.13 2.40 11.35 84.28 0.96 3.36 16 29 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.37 23.15 7.67 -92.71 -0.71 22.44 16 31 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.02 1.02 6.85 -2.38 -0.02 1.00 16 33 H 0.04 1.92 7.14 -2.39 -0.02 1.90 16 34 H 0.06 2.81 6.33 -2.39 -0.02 2.80 16 35 H 0.07 1.87 6.87 -2.38 -0.02 1.85 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 1.27 3.27 -2.39 -0.01 1.26 16 43 H 0.23 2.07 5.89 -2.91 -0.02 2.05 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.13 0.66 8.06 -2.39 -0.02 0.64 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -82.80 382.93 3.56 -79.23 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.27 Total: 29.42 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.51 Total: 4.02 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -5.97 Total: -137.96 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -82.80 3.56 -79.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667267945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.057 kcal (2) G-P(sol) polarization free energy of solvation -82.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds