Wall clock time and date at job start Tue Mar 31 2020 21:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.53000 * 109.46919 * 120.00399 * 2 1 3 5 5 H 1.08998 * 109.46575 * 185.00154 * 4 2 1 6 6 C 1.53002 * 109.47095 * 65.00178 * 4 2 1 7 7 N 1.46493 * 109.46901 * 185.00009 * 6 4 2 8 8 C 1.34773 * 119.99989 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00115 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00384 * 179.97438 * 8 7 6 11 11 H 1.09007 * 109.47163 * 59.99825 * 10 8 7 12 12 C 1.52997 * 109.47093 * 300.00426 * 10 8 7 13 13 O 1.42896 * 109.47656 * 179.97438 * 10 8 7 14 14 C 1.35949 * 117.00094 * 204.96271 * 13 10 8 15 15 C 1.38708 * 120.02714 * 174.28740 * 14 13 10 16 16 C 1.38151 * 119.96858 * 179.74729 * 15 14 13 17 17 C 1.38454 * 120.03032 * 0.53237 * 16 15 14 18 18 F 1.35099 * 119.97160 * 179.72324 * 17 16 15 19 19 C 1.38456 * 120.05634 * 359.74042 * 17 16 15 20 20 C 1.38152 * 120.03204 * 359.97438 * 19 17 16 21 21 N 1.46500 * 109.47219 * 304.99809 * 4 2 1 22 22 C 1.36939 * 119.99882 * 275.00485 * 21 4 2 23 23 H 1.07998 * 120.00030 * 359.97438 * 22 21 4 24 24 C 1.38810 * 119.99701 * 180.02562 * 22 21 4 25 25 N 1.31618 * 120.00331 * 359.71712 * 24 22 21 26 26 Si 1.86805 * 119.99791 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46833 * 179.72147 * 26 24 22 28 28 H 1.48495 * 109.47180 * 299.72017 * 26 24 22 29 29 H 1.48498 * 109.47020 * 59.72478 * 26 24 22 30 30 H 1.09004 * 109.47100 * 299.99686 * 1 2 3 31 31 H 1.09006 * 109.46786 * 59.99384 * 1 2 3 32 32 H 1.08992 * 109.47512 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46833 * 240.00793 * 2 1 3 34 34 H 1.09002 * 109.46669 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47756 * 300.00285 * 3 2 1 36 36 H 1.09004 * 109.46930 * 60.00211 * 3 2 1 37 37 H 1.08999 * 109.46787 * 304.99666 * 6 4 2 38 38 H 1.08994 * 109.47136 * 64.99764 * 6 4 2 39 39 H 0.97002 * 120.00378 * 359.97438 * 7 6 4 40 40 H 1.08999 * 109.47672 * 59.99429 * 12 10 8 41 41 H 1.09001 * 109.47185 * 179.97438 * 12 10 8 42 42 H 1.09005 * 109.47328 * 299.99490 * 12 10 8 43 43 H 1.08004 * 120.01805 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.98726 * 180.25034 * 16 15 14 45 45 H 1.08003 * 119.98255 * 179.97438 * 19 17 16 46 46 H 1.08003 * 120.01304 * 179.97438 * 20 19 17 47 47 H 0.96996 * 119.99756 * 95.00047 * 21 4 2 48 48 H 0.97001 * 119.99807 * 0.28261 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.6352 -2.1956 1.1878 7 7 2.0183 -2.8595 2.4362 8 6 1.7587 -4.1706 2.6093 9 8 1.2075 -4.8007 1.7318 10 6 2.1532 -4.8538 3.8933 11 1 1.6484 -4.3725 4.7310 12 6 3.6678 -4.7488 4.0823 13 8 1.7740 -6.2304 3.8366 14 6 1.5635 -6.8620 5.0219 15 6 1.0792 -8.1617 5.0395 16 6 0.8706 -8.8042 6.2445 17 6 1.1342 -8.1475 7.4346 18 9 0.9245 -8.7750 8.6125 19 6 1.6123 -6.8482 7.4186 20 6 1.8273 -6.2054 6.2148 21 7 1.4559 -0.1038 2.4424 22 6 2.0442 1.0001 2.9997 23 1 2.9389 1.4151 2.5599 24 6 1.4910 1.5848 4.1306 25 7 0.3979 1.0817 4.6639 26 14 2.2939 3.0902 4.8913 27 1 1.5111 3.5228 6.0768 28 1 3.6791 2.7550 5.3082 29 1 2.3295 4.1896 3.8936 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.5563 -2.2707 1.0525 38 1 2.1408 -2.6766 0.3505 39 1 2.4588 -2.3555 3.1382 40 1 3.9567 -3.6987 4.1259 41 1 3.9532 -5.2426 5.0113 42 1 4.1728 -5.2301 3.2447 43 1 0.8689 -8.6724 4.1114 44 1 0.4975 -9.8175 6.2585 45 1 1.8171 -6.3369 8.3476 46 1 2.1998 -5.1917 6.2026 47 1 0.6524 -0.4768 2.8375 48 1 -0.0188 0.2998 4.2691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667519632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:26 Heat of formation + Delta-G solvation = -88.957536 kcal Electronic energy + Delta-G solvation = -29460.699977 eV Core-core repulsion = 25237.731403 eV Total energy + Delta-G solvation = -4222.968573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.01802 -40.76699 -39.38081 -37.70456 -37.08307 -34.17618 -33.29831 -32.39600 -31.27873 -30.05950 -29.44099 -27.85920 -26.47823 -24.92619 -23.73833 -23.34835 -22.62378 -21.88364 -20.24913 -19.00342 -18.69102 -17.74419 -17.51600 -17.40186 -16.31398 -15.99057 -15.82024 -15.67235 -15.11326 -14.89020 -14.83216 -14.37242 -14.09269 -13.92639 -13.76113 -13.54138 -13.42716 -13.40057 -13.28220 -12.90874 -12.57594 -12.44683 -12.27951 -11.98584 -11.86847 -11.42053 -11.17376 -11.15623 -11.02323 -10.95628 -10.84222 -10.59089 -10.16750 -10.11184 -9.86259 -9.66663 -9.45999 -9.28346 -9.00781 -8.83453 -8.33342 -7.17204 -6.19316 -3.21477 0.87584 0.95900 2.51228 2.65693 3.31147 3.44032 3.46031 3.58047 3.63948 4.07127 4.38301 4.46626 4.55439 4.57094 4.65650 4.77586 4.86034 5.02719 5.17567 5.23823 5.28917 5.38322 5.41788 5.44072 5.60908 5.61650 5.70317 5.73557 5.80663 5.87076 5.87655 5.95608 5.97303 6.04410 6.23176 6.27275 6.41346 6.42268 6.49887 6.56312 6.67980 6.75481 6.92916 7.07983 7.20097 7.67148 7.71100 8.30630 8.63990 9.08227 9.95170 10.10264 11.27283 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012182 B = 0.002713 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.008107 B =10319.367678 C =11963.123247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.055 0.945 6 C 0.112 3.888 7 N -0.707 5.707 8 C 0.516 3.484 9 O -0.530 6.530 10 C 0.065 3.935 11 H 0.102 0.898 12 C -0.176 4.176 13 O -0.281 6.281 14 C 0.126 3.874 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.054 3.946 18 F -0.143 7.143 19 C -0.109 4.109 20 C -0.184 4.184 21 N -0.729 5.729 22 C -0.328 4.328 23 H 0.067 0.933 24 C -0.041 4.041 25 N -0.941 5.941 26 Si 1.074 2.926 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.368 0.632 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -14.344 0.314 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.073 0.927 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.300 3.700 9 O -0.406 6.406 10 C 0.005 3.995 11 H 0.120 0.880 12 C -0.234 4.234 13 O -0.193 6.193 14 C 0.080 3.920 15 C -0.141 4.141 16 C -0.132 4.132 17 C 0.035 3.965 18 F -0.122 7.122 19 C -0.128 4.128 20 C -0.202 4.202 21 N -0.372 5.372 22 C -0.458 4.458 23 H 0.085 0.915 24 C -0.239 4.239 25 N -0.586 5.586 26 Si 0.905 3.095 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.247 0.753 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.202 0.798 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.641 -13.656 0.686 14.439 hybrid contribution 0.082 -0.800 -0.512 0.954 sum 4.723 -14.456 0.174 15.209 Atomic orbital electron populations 1.21767 0.95759 1.00556 1.01665 1.21607 0.96100 0.97334 0.97845 1.21833 0.99586 0.96212 1.02195 1.20490 0.96973 0.88035 0.88194 0.92662 1.21807 1.00701 0.93526 0.85156 1.45865 1.61080 1.08631 1.20471 1.19922 0.79597 0.82583 0.87939 1.90716 1.41683 1.64792 1.43393 1.22274 0.97348 0.81580 0.98323 0.87998 1.22352 0.92884 1.04239 1.03917 1.86220 1.82917 1.23385 1.26826 1.19100 0.95378 0.92726 0.84780 1.20303 1.02336 0.92804 0.98659 1.20948 1.01011 1.00826 0.90389 1.17582 1.05381 0.92285 0.81235 1.91487 1.93092 1.82248 1.45338 1.20964 0.99425 0.93265 0.99172 1.21254 1.06053 1.01613 0.91314 1.42435 1.31554 1.33898 1.29325 1.19978 1.09447 1.06098 1.10312 0.91470 1.25661 0.98294 1.04148 0.95845 1.70903 1.20147 1.24782 1.42729 0.83311 0.74685 0.75213 0.76262 1.21172 1.22341 1.22308 0.91366 0.94186 0.93798 0.93132 0.94123 0.94813 0.89505 0.91336 0.91615 0.75314 0.89708 0.90672 0.90650 0.83970 0.84068 0.84301 0.84002 0.79846 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.74 37.16 0.32 -2.00 16 2 C -0.11 -1.75 2.74 -90.62 -0.25 -2.00 16 3 C -0.14 -2.43 8.46 37.16 0.31 -2.11 16 4 C 0.17 2.99 2.28 -67.93 -0.16 2.83 16 5 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.78 5.10 -4.04 -0.02 1.76 16 7 N -0.71 -10.66 5.28 -60.30 -0.32 -10.98 16 8 C 0.52 8.09 7.23 -10.99 -0.08 8.01 16 9 O -0.53 -10.24 16.50 -14.35 -0.24 -10.48 16 10 C 0.06 0.81 2.64 -27.88 -0.07 0.74 16 11 H 0.10 1.16 6.31 -51.93 -0.33 0.84 16 12 C -0.18 -1.75 9.07 37.16 0.34 -1.41 16 13 O -0.28 -3.88 9.33 -39.49 -0.37 -4.24 16 14 C 0.13 1.50 6.60 -39.24 -0.26 1.24 16 15 C -0.12 -1.29 9.98 -39.44 -0.39 -1.68 16 16 C -0.11 -1.08 10.02 -39.53 -0.40 -1.47 16 17 C 0.05 0.57 7.30 -39.42 -0.29 0.29 16 18 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 19 C -0.11 -1.10 10.02 -39.53 -0.40 -1.49 16 20 C -0.18 -1.93 8.24 -39.44 -0.33 -2.25 16 21 N -0.73 -15.22 3.53 -53.43 -0.19 -15.40 16 22 C -0.33 -7.86 7.75 -15.06 -0.12 -7.98 16 23 H 0.07 1.61 7.32 -52.49 -0.38 1.23 16 24 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 25 N -0.94 -26.51 13.70 55.49 0.76 -25.75 16 26 Si 1.07 23.92 29.92 -169.99 -5.09 18.83 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.30 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.30 -6.39 7.11 56.52 0.40 -5.99 16 30 H 0.07 1.32 7.47 -51.93 -0.39 0.93 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 37 H 0.07 1.17 6.34 -51.93 -0.33 0.84 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.41 6.06 7.56 -40.82 -0.31 5.75 16 40 H 0.08 0.78 7.56 -51.93 -0.39 0.38 16 41 H 0.07 0.64 6.91 -51.93 -0.36 0.28 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.14 1.30 5.43 -52.48 -0.28 1.02 16 47 H 0.37 8.27 6.63 -40.82 -0.27 8.00 16 48 H 0.25 7.09 6.77 -40.82 -0.28 6.82 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -29.72 390.41 -8.38 -38.10 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -6.99 Total: 14.30 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.87 Total: -8.70 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.25 Total: -52.13 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.61 Total: -14.72 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.09 Total: 18.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.72 -8.38 -38.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667519632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.859 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds