Wall clock time and date at job start Tue Mar 31 2020 21:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.53000 * 109.46919 * 120.00399 * 2 1 3 5 5 H 1.08998 * 109.46575 * 185.00154 * 4 2 1 6 6 C 1.53002 * 109.47095 * 65.00178 * 4 2 1 7 7 N 1.46493 * 109.46901 * 185.00009 * 6 4 2 8 8 C 1.34773 * 119.99989 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00115 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00384 * 179.97438 * 8 7 6 11 11 H 1.09007 * 109.47163 * 59.99825 * 10 8 7 12 12 C 1.52997 * 109.47093 * 300.00426 * 10 8 7 13 13 O 1.42896 * 109.47656 * 179.97438 * 10 8 7 14 14 C 1.35949 * 117.00094 * 204.96271 * 13 10 8 15 15 C 1.38708 * 120.02714 * 174.28740 * 14 13 10 16 16 C 1.38151 * 119.96858 * 179.74729 * 15 14 13 17 17 C 1.38454 * 120.03032 * 0.53237 * 16 15 14 18 18 F 1.35099 * 119.97160 * 179.72324 * 17 16 15 19 19 C 1.38456 * 120.05634 * 359.74042 * 17 16 15 20 20 C 1.38152 * 120.03204 * 359.97438 * 19 17 16 21 21 N 1.46500 * 109.47219 * 304.99809 * 4 2 1 22 22 C 1.36939 * 119.99882 * 275.00485 * 21 4 2 23 23 H 1.07998 * 120.00030 * 359.97438 * 22 21 4 24 24 C 1.38810 * 119.99701 * 180.02562 * 22 21 4 25 25 N 1.31618 * 120.00331 * 359.71712 * 24 22 21 26 26 Si 1.86805 * 119.99791 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46833 * 179.72147 * 26 24 22 28 28 H 1.48495 * 109.47180 * 299.72017 * 26 24 22 29 29 H 1.48498 * 109.47020 * 59.72478 * 26 24 22 30 30 H 1.09004 * 109.47100 * 299.99686 * 1 2 3 31 31 H 1.09006 * 109.46786 * 59.99384 * 1 2 3 32 32 H 1.08992 * 109.47512 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46833 * 240.00793 * 2 1 3 34 34 H 1.09002 * 109.46669 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47756 * 300.00285 * 3 2 1 36 36 H 1.09004 * 109.46930 * 60.00211 * 3 2 1 37 37 H 1.08999 * 109.46787 * 304.99666 * 6 4 2 38 38 H 1.08994 * 109.47136 * 64.99764 * 6 4 2 39 39 H 0.97002 * 120.00378 * 359.97438 * 7 6 4 40 40 H 1.08999 * 109.47672 * 59.99429 * 12 10 8 41 41 H 1.09001 * 109.47185 * 179.97438 * 12 10 8 42 42 H 1.09005 * 109.47328 * 299.99490 * 12 10 8 43 43 H 1.08004 * 120.01805 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.98726 * 180.25034 * 16 15 14 45 45 H 1.08003 * 119.98255 * 179.97438 * 19 17 16 46 46 H 1.08003 * 120.01304 * 179.97438 * 20 19 17 47 47 H 0.96996 * 119.99756 * 95.00047 * 21 4 2 48 48 H 0.97001 * 119.99807 * 0.28261 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.6352 -2.1956 1.1878 7 7 2.0183 -2.8595 2.4362 8 6 1.7587 -4.1706 2.6093 9 8 1.2075 -4.8007 1.7318 10 6 2.1532 -4.8538 3.8933 11 1 1.6484 -4.3725 4.7310 12 6 3.6678 -4.7488 4.0823 13 8 1.7740 -6.2304 3.8366 14 6 1.5635 -6.8620 5.0219 15 6 1.0792 -8.1617 5.0395 16 6 0.8706 -8.8042 6.2445 17 6 1.1342 -8.1475 7.4346 18 9 0.9245 -8.7750 8.6125 19 6 1.6123 -6.8482 7.4186 20 6 1.8273 -6.2054 6.2148 21 7 1.4559 -0.1038 2.4424 22 6 2.0442 1.0001 2.9997 23 1 2.9389 1.4151 2.5599 24 6 1.4910 1.5848 4.1306 25 7 0.3979 1.0817 4.6639 26 14 2.2939 3.0902 4.8913 27 1 1.5111 3.5228 6.0768 28 1 3.6791 2.7550 5.3082 29 1 2.3295 4.1896 3.8936 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.5563 -2.2707 1.0525 38 1 2.1408 -2.6766 0.3505 39 1 2.4588 -2.3555 3.1382 40 1 3.9567 -3.6987 4.1259 41 1 3.9532 -5.2426 5.0113 42 1 4.1728 -5.2301 3.2447 43 1 0.8689 -8.6724 4.1114 44 1 0.4975 -9.8175 6.2585 45 1 1.8171 -6.3369 8.3476 46 1 2.1998 -5.1917 6.2026 47 1 0.6524 -0.4768 2.8375 48 1 -0.0188 0.2998 4.2691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667519632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:25 Heat of formation + Delta-G solvation = -105.157727 kcal Electronic energy + Delta-G solvation = -29461.402470 eV Core-core repulsion = 25237.731403 eV Total energy + Delta-G solvation = -4223.671066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.85286 -41.76331 -40.53225 -39.01516 -38.14455 -35.54696 -35.02718 -33.35508 -32.12681 -31.65418 -30.29619 -29.30366 -27.86428 -26.02014 -25.28723 -24.39604 -23.74908 -22.96691 -21.46660 -20.38315 -19.57003 -19.34600 -18.75522 -18.38094 -17.33452 -17.10829 -16.95912 -16.61363 -16.35772 -16.26401 -15.75456 -15.69556 -15.53177 -15.31002 -15.00001 -14.76641 -14.64299 -14.38694 -14.17414 -13.83567 -13.68960 -13.56864 -13.35095 -13.23319 -12.86990 -12.79955 -12.74575 -12.63047 -12.39283 -12.05558 -12.03480 -11.91689 -11.83848 -11.50487 -11.38494 -11.13504 -10.96710 -10.76561 -10.23427 -10.14296 -9.19288 -9.00579 -8.20778 -5.16334 0.09995 0.13311 1.41689 1.49596 1.64778 1.71735 1.87194 2.49777 2.51579 2.77929 3.27635 3.42200 3.53926 3.64609 3.69320 3.74785 3.78477 3.83476 3.85773 4.09489 4.20649 4.25308 4.26096 4.35982 4.42734 4.58113 4.60345 4.65401 4.68098 4.86166 4.88965 4.91008 5.02524 5.05026 5.08748 5.09159 5.14788 5.17242 5.21276 5.25803 5.42066 5.52419 5.62982 5.72029 5.80316 6.18442 6.44038 6.63891 7.06301 7.19893 8.10299 8.23005 9.29333 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012182 B = 0.002713 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.008107 B =10319.367678 C =11963.123247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.136 4.136 4 C 0.176 3.824 5 H 0.059 0.941 6 C 0.119 3.881 7 N -0.702 5.702 8 C 0.514 3.486 9 O -0.570 6.570 10 C 0.068 3.932 11 H 0.113 0.887 12 C -0.169 4.169 13 O -0.303 6.303 14 C 0.106 3.894 15 C -0.129 4.129 16 C -0.107 4.107 17 C 0.043 3.957 18 F -0.147 7.147 19 C -0.111 4.111 20 C -0.185 4.185 21 N -0.732 5.732 22 C -0.299 4.299 23 H 0.071 0.929 24 C -0.100 4.100 25 N -0.980 5.980 26 Si 1.114 2.886 27 H -0.304 1.304 28 H -0.278 1.278 29 H -0.287 1.287 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.413 0.587 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.150 0.850 44 H 0.165 0.835 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.359 0.641 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -14.754 -0.146 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.194 4.194 4 C 0.067 3.933 5 H 0.077 0.923 6 C -0.005 4.005 7 N -0.354 5.354 8 C 0.300 3.700 9 O -0.449 6.449 10 C 0.008 3.992 11 H 0.130 0.870 12 C -0.226 4.226 13 O -0.216 6.216 14 C 0.061 3.939 15 C -0.148 4.148 16 C -0.126 4.126 17 C 0.024 3.976 18 F -0.126 7.126 19 C -0.130 4.130 20 C -0.204 4.204 21 N -0.374 5.374 22 C -0.431 4.431 23 H 0.089 0.911 24 C -0.292 4.292 25 N -0.629 5.629 26 Si 0.942 3.058 27 H -0.231 1.231 28 H -0.204 1.204 29 H -0.213 1.213 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.168 0.832 44 H 0.182 0.818 45 H 0.174 0.826 46 H 0.171 0.829 47 H 0.191 0.809 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.165 -14.071 0.194 15.364 hybrid contribution -0.378 -0.728 -0.465 0.943 sum 5.787 -14.800 -0.270 15.893 Atomic orbital electron populations 1.21687 0.96002 1.00704 1.00708 1.21593 0.95820 0.97039 0.98266 1.21748 1.00041 0.96365 1.01218 1.20613 0.96810 0.88668 0.87208 0.92312 1.21686 1.00091 0.92657 0.86048 1.45820 1.60694 1.08622 1.20280 1.20481 0.78557 0.82399 0.88591 1.90690 1.43568 1.65593 1.45081 1.22291 0.99085 0.81276 0.96509 0.86973 1.22333 0.90667 1.05004 1.04631 1.86180 1.83532 1.23747 1.28123 1.19349 0.96545 0.93347 0.84646 1.20502 1.02234 0.92613 0.99440 1.21175 1.00069 1.01728 0.89614 1.17801 1.05762 0.92692 0.81377 1.91477 1.93175 1.82351 1.45616 1.21182 0.98866 0.93223 0.99735 1.21378 1.05926 1.02106 0.90970 1.42501 1.31158 1.33328 1.30378 1.20180 1.08391 1.05630 1.08888 0.91147 1.26662 0.98709 1.06454 0.97405 1.70998 1.22081 1.25661 1.44151 0.82756 0.74615 0.73285 0.75136 1.23085 1.20380 1.21347 0.94814 0.92561 0.93150 0.90240 0.93301 0.93045 0.93190 0.92569 0.90223 0.74978 0.88803 0.88955 0.91025 0.83190 0.81767 0.82625 0.82863 0.80876 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.74 71.98 0.63 -3.65 16 2 C -0.11 -3.24 2.74 -10.79 -0.03 -3.27 16 3 C -0.14 -4.42 8.46 71.98 0.61 -3.81 16 4 C 0.18 5.80 2.28 44.99 0.10 5.90 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.65 5.10 86.38 0.44 4.09 16 7 N -0.70 -20.63 5.28 -463.08 -2.45 -23.08 16 8 C 0.51 15.93 7.23 87.66 0.63 16.57 16 9 O -0.57 -22.12 16.50 16.00 0.26 -21.86 16 10 C 0.07 1.65 2.64 29.85 0.08 1.73 16 11 H 0.11 2.47 6.31 -2.38 -0.02 2.45 16 12 C -0.17 -3.09 9.07 71.98 0.65 -2.43 16 13 O -0.30 -8.23 9.33 -73.94 -0.69 -8.92 16 14 C 0.11 2.45 6.60 22.49 0.15 2.60 16 15 C -0.13 -2.60 9.98 22.36 0.22 -2.38 16 16 C -0.11 -1.89 10.02 22.30 0.22 -1.67 16 17 C 0.04 0.85 7.30 22.37 0.16 1.01 16 18 F -0.15 -3.09 17.27 44.97 0.78 -2.32 16 19 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 20 C -0.19 -3.66 8.24 22.36 0.18 -3.47 16 21 N -0.73 -30.37 3.53 -322.94 -1.14 -31.51 16 22 C -0.30 -14.21 7.75 84.03 0.65 -13.56 16 23 H 0.07 3.28 7.32 -2.91 -0.02 3.26 16 24 C -0.10 -5.23 5.50 84.86 0.47 -4.77 16 25 N -0.98 -56.35 13.70 21.65 0.30 -56.05 16 26 Si 1.11 48.25 29.92 68.60 2.05 50.30 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 29 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 30 H 0.03 1.30 7.47 -2.39 -0.02 1.28 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.05 1.53 6.46 -2.39 -0.02 1.51 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.99 5.99 -2.39 -0.01 1.98 16 37 H 0.06 1.88 6.34 -2.39 -0.02 1.87 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.41 11.81 7.56 -92.71 -0.70 11.11 16 40 H 0.09 1.54 7.56 -2.39 -0.02 1.52 16 41 H 0.09 1.38 6.91 -2.39 -0.02 1.36 16 42 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.15 2.56 5.43 -2.91 -0.02 2.55 16 47 H 0.36 16.40 6.63 -92.71 -0.61 15.78 16 48 H 0.24 13.98 6.77 -92.71 -0.63 13.35 16 Total: -1.00 -64.51 390.41 4.34 -60.17 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.18 Total: 42.23 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.40 Total: -8.96 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -3.29 Total: -110.64 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.43 Total: -30.78 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.30 kcal Total: -64.51 4.34 -60.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667519632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.988 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds