Wall clock time and date at job start Tue Mar 31 2020 21:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47474 * 2 1 4 4 C 1.46494 * 120.00173 * 83.07235 * 3 2 1 5 5 C 1.52995 * 109.47125 * 90.00120 * 4 3 2 6 6 N 1.46507 * 109.47561 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00291 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.38804 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00119 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47450 * 90.00081 * 11 9 7 13 13 H 1.48504 * 109.47089 * 209.99906 * 11 9 7 14 14 H 1.48499 * 109.47007 * 329.99729 * 11 9 7 15 15 C 1.34781 * 119.99546 * 263.07843 * 3 2 1 16 16 O 1.21283 * 119.99667 * 184.32656 * 15 3 2 17 17 C 1.50701 * 120.00311 * 4.32237 * 15 3 2 18 18 C 1.53003 * 109.47120 * 278.76266 * 17 15 3 19 19 O 1.42899 * 109.46994 * 38.75896 * 17 15 3 20 20 C 1.42899 * 114.00128 * 186.18143 * 19 17 15 21 21 C 1.50688 * 109.47001 * 158.76098 * 17 15 3 22 22 C 1.38223 * 120.01603 * 246.33156 * 21 17 15 23 23 C 1.38223 * 120.02934 * 179.97438 * 22 21 17 24 24 C 1.38265 * 120.05122 * 0.02562 * 23 22 21 25 25 C 1.38177 * 120.02574 * 0.02562 * 24 23 22 26 26 C 1.38440 * 120.01429 * 66.06010 * 21 17 15 27 27 F 1.35101 * 120.02553 * 359.97438 * 26 21 17 28 28 H 1.08999 * 109.47559 * 183.69705 * 1 2 3 29 29 H 1.09002 * 109.46964 * 303.70004 * 1 2 3 30 30 H 1.08996 * 109.46939 * 63.69612 * 1 2 3 31 31 H 1.09001 * 109.47537 * 239.99812 * 2 1 3 32 32 H 1.09001 * 109.47087 * 119.99700 * 2 1 3 33 33 H 1.08998 * 109.47238 * 210.00244 * 4 3 2 34 34 H 1.09002 * 109.47203 * 330.00141 * 4 3 2 35 35 H 1.09004 * 109.47559 * 300.00237 * 5 4 3 36 36 H 1.09002 * 109.47063 * 59.99935 * 5 4 3 37 37 H 0.97003 * 119.99345 * 0.02562 * 6 5 4 38 38 H 0.97002 * 119.99902 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.46945 * 59.99848 * 18 17 15 40 40 H 1.08999 * 109.46844 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47018 * 300.00521 * 18 17 15 42 42 H 1.08995 * 109.47230 * 186.34958 * 20 19 17 43 43 H 1.09001 * 109.46816 * 306.34604 * 20 19 17 44 44 H 1.08994 * 109.47597 * 66.34602 * 20 19 17 45 45 H 1.08003 * 119.98142 * 0.02562 * 22 21 17 46 46 H 1.07997 * 119.97430 * 180.02562 * 23 22 21 47 47 H 1.07996 * 119.98566 * 179.97438 * 24 23 22 48 48 H 1.08000 * 120.01205 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1183 2.1229 1.2594 5 6 3.5031 1.9037 1.8718 6 7 3.6034 2.6458 3.1310 7 6 4.7603 2.6005 3.8623 8 1 5.5990 2.0179 3.5106 9 6 4.8550 3.3032 5.0555 10 7 3.8330 4.0136 5.4839 11 14 6.4333 3.2419 6.0528 12 1 7.3341 4.3410 5.6220 13 1 6.1143 3.3998 7.4946 14 1 7.1062 1.9362 5.8348 15 6 2.3757 1.9696 -1.1588 16 8 2.8535 3.0843 -1.1507 17 6 2.1815 1.2424 -2.4644 18 6 3.3378 0.2639 -2.6800 19 8 0.9480 0.5218 -2.4294 20 6 0.7319 -0.3161 -3.5665 21 6 2.1493 2.2388 -3.5943 22 6 0.9858 2.4286 -4.3159 23 6 0.9558 3.3429 -5.3521 24 6 2.0896 4.0683 -5.6685 25 6 3.2542 3.8796 -4.9492 26 6 3.2835 2.9687 -3.9066 27 9 4.4197 2.7884 -3.1981 28 1 -0.3634 -1.0255 0.0663 29 1 -0.3633 0.5702 0.8550 30 1 -0.3633 0.4554 -0.9212 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9698 3.1856 1.0680 34 1 1.3547 1.7681 1.9516 35 1 3.6518 0.8409 2.0632 36 1 4.2668 2.2585 1.1796 37 1 2.8502 3.1693 3.4466 38 1 3.8994 4.5049 6.3176 39 1 3.3611 -0.4568 -1.8626 40 1 3.1971 -0.2624 -3.6241 41 1 4.2787 0.8135 -2.7065 42 1 -0.2710 -0.7404 -3.5199 43 1 0.8348 0.2738 -4.4773 44 1 1.4670 -1.1209 -3.5699 45 1 0.0995 1.8628 -4.0694 46 1 0.0461 3.4908 -5.9151 47 1 2.0651 4.7821 -6.4785 48 1 4.1398 4.4461 -5.1968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668449851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:10 Heat of formation + Delta-G solvation = -60.357127 kcal Electronic energy + Delta-G solvation = -31155.792435 eV Core-core repulsion = 26934.064068 eV Total energy + Delta-G solvation = -4221.728367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.91791 -41.00077 -39.00345 -37.84600 -36.16365 -34.44291 -32.78043 -31.63119 -30.93779 -30.18404 -29.73689 -27.99159 -27.19199 -24.38978 -23.78586 -23.19893 -22.94432 -22.00688 -21.04772 -19.21828 -18.01802 -17.62933 -17.08037 -16.84274 -16.29597 -15.91206 -15.71017 -15.54795 -15.19421 -15.10952 -14.65498 -14.35366 -14.13669 -13.81191 -13.49985 -13.43476 -13.36224 -13.17314 -12.96271 -12.88571 -12.75097 -12.45241 -12.32900 -12.11809 -11.93769 -11.76418 -11.56209 -11.18801 -11.08188 -10.92471 -10.83256 -10.79723 -10.60668 -10.06391 -10.01022 -9.75818 -9.62767 -9.12997 -8.81443 -8.80725 -8.40389 -6.86434 -5.70176 -2.98985 0.89925 1.01329 2.54487 3.04469 3.39560 3.45501 3.48727 3.53446 3.55138 4.09500 4.22185 4.39173 4.59021 4.61217 4.67045 4.75107 5.00888 5.01573 5.03530 5.06378 5.15541 5.27868 5.30335 5.38351 5.41988 5.54028 5.57573 5.59206 5.71239 5.76945 5.83461 5.88100 5.89835 5.93604 5.99828 6.03187 6.12259 6.14731 6.25140 6.46643 6.62907 6.67024 6.70488 6.82556 7.00963 7.58075 7.76087 8.29740 8.48509 9.59226 10.16059 10.51397 11.52868 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.003088 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.698122 B = 9066.303518 C =10081.595863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.592 5.592 4 C 0.109 3.891 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.532 3.468 16 O -0.514 6.514 17 C 0.146 3.854 18 C -0.188 4.188 19 O -0.353 6.353 20 C 0.007 3.993 21 C -0.140 4.140 22 C -0.079 4.079 23 C -0.140 4.140 24 C -0.086 4.086 25 C -0.161 4.161 26 C 0.143 3.857 27 F -0.123 7.123 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -9.769 -26.569 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.325 5.325 4 C -0.013 4.013 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.316 3.684 16 O -0.389 6.389 17 C 0.103 3.897 18 C -0.245 4.245 19 O -0.272 6.272 20 C -0.089 4.089 21 C -0.141 4.141 22 C -0.097 4.097 23 C -0.158 4.158 24 C -0.104 4.104 25 C -0.180 4.180 26 C 0.123 3.877 27 F -0.102 7.102 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.157 0.843 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.438 -9.215 -26.295 29.418 hybrid contribution 0.942 0.082 0.669 1.159 sum -8.495 -9.133 -25.627 28.501 Atomic orbital electron populations 1.22220 0.95612 1.01522 1.02828 1.21710 0.95087 0.82016 1.02794 1.47807 1.63554 1.14568 1.06529 1.21704 0.98949 0.97348 0.83339 1.20905 0.93713 0.95115 0.88789 1.42212 1.16244 1.57836 1.21186 1.19211 0.92152 1.24341 1.00990 0.91233 1.24739 0.97789 1.00188 0.98345 1.69667 1.30005 1.35456 1.23159 0.86166 0.82871 0.77607 0.79423 1.21701 1.21770 1.20780 1.19716 0.78565 0.85939 0.84140 1.90790 1.43169 1.18638 1.86257 1.20310 0.86912 0.90565 0.91864 1.22631 0.98798 0.99630 1.03441 1.88221 1.37040 1.59696 1.42232 1.23096 1.02225 0.94171 0.89429 1.19950 0.94105 1.00736 0.99341 1.20994 0.96793 0.97440 0.94465 1.21137 0.98781 0.97267 0.98597 1.21035 0.92025 0.98458 0.98873 1.21164 1.00401 0.99815 0.96637 1.17377 0.82411 0.96680 0.91201 1.91507 1.48073 1.93633 1.76953 0.92356 0.92948 0.90650 0.89597 0.91018 0.89930 0.90386 0.96475 0.95852 0.78289 0.93539 0.90190 0.90690 0.89335 0.89007 0.92697 0.93273 0.84282 0.85303 0.85075 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.76 37.16 0.36 -1.34 16 2 C 0.11 1.27 5.53 -4.04 -0.02 1.25 16 3 N -0.59 -9.25 2.48 -173.69 -0.43 -9.68 16 4 C 0.11 2.02 5.51 -4.05 -0.02 2.00 16 5 C 0.14 3.20 6.58 -4.04 -0.03 3.18 16 6 N -0.73 -19.82 5.60 -59.91 -0.34 -20.15 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -29.25 13.06 55.49 0.72 -28.52 16 11 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 15 C 0.53 8.79 6.48 -10.98 -0.07 8.72 16 16 O -0.51 -10.60 13.95 5.55 0.08 -10.52 16 17 C 0.15 1.79 0.43 -92.93 -0.04 1.76 16 18 C -0.19 -1.99 7.51 37.16 0.28 -1.71 16 19 O -0.35 -3.44 4.25 -35.23 -0.15 -3.59 16 20 C 0.01 0.04 9.17 101.05 0.93 0.97 16 21 C -0.14 -1.72 4.22 -104.56 -0.44 -2.16 16 22 C -0.08 -0.78 7.67 -39.59 -0.30 -1.08 16 23 C -0.14 -1.17 10.04 -39.58 -0.40 -1.57 16 24 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 25 C -0.16 -1.75 10.03 -39.51 -0.40 -2.15 16 26 C 0.14 1.92 6.17 -39.42 -0.24 1.68 16 27 F -0.12 -1.94 13.32 2.25 0.03 -1.91 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.60 8.01 -51.93 -0.42 0.19 16 30 H 0.07 0.80 5.85 -51.93 -0.30 0.50 16 31 H 0.09 0.88 3.96 -51.93 -0.21 0.68 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 33 H 0.08 1.69 7.49 -51.93 -0.39 1.30 16 34 H 0.08 1.34 7.94 -51.93 -0.41 0.93 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.38 10.78 7.67 -40.82 -0.31 10.47 16 38 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.08 0.79 6.29 -51.93 -0.33 0.46 16 40 H 0.07 0.61 6.62 -51.93 -0.34 0.27 16 41 H 0.09 1.10 5.86 -51.93 -0.30 0.79 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.33 5.28 -51.93 -0.27 0.06 16 44 H 0.05 0.27 6.71 -51.93 -0.35 -0.08 16 45 H 0.14 1.14 5.80 -52.48 -0.30 0.84 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -35.62 376.63 -7.34 -42.96 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.87 Total: 6.78 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.04 Total: 0.72 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.04 Total: -58.35 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.07 Total: -14.11 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.62 -7.34 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668449851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.397 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds