Wall clock time and date at job start Tue Mar 31 2020 21:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47474 * 2 1 4 4 C 1.46494 * 120.00173 * 83.07235 * 3 2 1 5 5 C 1.52995 * 109.47125 * 90.00120 * 4 3 2 6 6 N 1.46507 * 109.47561 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00291 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.38804 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00119 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47450 * 90.00081 * 11 9 7 13 13 H 1.48504 * 109.47089 * 209.99906 * 11 9 7 14 14 H 1.48499 * 109.47007 * 329.99729 * 11 9 7 15 15 C 1.34781 * 119.99546 * 263.07843 * 3 2 1 16 16 O 1.21283 * 119.99667 * 184.32656 * 15 3 2 17 17 C 1.50701 * 120.00311 * 4.32237 * 15 3 2 18 18 C 1.53003 * 109.47120 * 278.76266 * 17 15 3 19 19 O 1.42899 * 109.46994 * 38.75896 * 17 15 3 20 20 C 1.42899 * 114.00128 * 186.18143 * 19 17 15 21 21 C 1.50688 * 109.47001 * 158.76098 * 17 15 3 22 22 C 1.38223 * 120.01603 * 246.33156 * 21 17 15 23 23 C 1.38223 * 120.02934 * 179.97438 * 22 21 17 24 24 C 1.38265 * 120.05122 * 0.02562 * 23 22 21 25 25 C 1.38177 * 120.02574 * 0.02562 * 24 23 22 26 26 C 1.38440 * 120.01429 * 66.06010 * 21 17 15 27 27 F 1.35101 * 120.02553 * 359.97438 * 26 21 17 28 28 H 1.08999 * 109.47559 * 183.69705 * 1 2 3 29 29 H 1.09002 * 109.46964 * 303.70004 * 1 2 3 30 30 H 1.08996 * 109.46939 * 63.69612 * 1 2 3 31 31 H 1.09001 * 109.47537 * 239.99812 * 2 1 3 32 32 H 1.09001 * 109.47087 * 119.99700 * 2 1 3 33 33 H 1.08998 * 109.47238 * 210.00244 * 4 3 2 34 34 H 1.09002 * 109.47203 * 330.00141 * 4 3 2 35 35 H 1.09004 * 109.47559 * 300.00237 * 5 4 3 36 36 H 1.09002 * 109.47063 * 59.99935 * 5 4 3 37 37 H 0.97003 * 119.99345 * 0.02562 * 6 5 4 38 38 H 0.97002 * 119.99902 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.46945 * 59.99848 * 18 17 15 40 40 H 1.08999 * 109.46844 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47018 * 300.00521 * 18 17 15 42 42 H 1.08995 * 109.47230 * 186.34958 * 20 19 17 43 43 H 1.09001 * 109.46816 * 306.34604 * 20 19 17 44 44 H 1.08994 * 109.47597 * 66.34602 * 20 19 17 45 45 H 1.08003 * 119.98142 * 0.02562 * 22 21 17 46 46 H 1.07997 * 119.97430 * 180.02562 * 23 22 21 47 47 H 1.07996 * 119.98566 * 179.97438 * 24 23 22 48 48 H 1.08000 * 120.01205 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1183 2.1229 1.2594 5 6 3.5031 1.9037 1.8718 6 7 3.6034 2.6458 3.1310 7 6 4.7603 2.6005 3.8623 8 1 5.5990 2.0179 3.5106 9 6 4.8550 3.3032 5.0555 10 7 3.8330 4.0136 5.4839 11 14 6.4333 3.2419 6.0528 12 1 7.3341 4.3410 5.6220 13 1 6.1143 3.3998 7.4946 14 1 7.1062 1.9362 5.8348 15 6 2.3757 1.9696 -1.1588 16 8 2.8535 3.0843 -1.1507 17 6 2.1815 1.2424 -2.4644 18 6 3.3378 0.2639 -2.6800 19 8 0.9480 0.5218 -2.4294 20 6 0.7319 -0.3161 -3.5665 21 6 2.1493 2.2388 -3.5943 22 6 0.9858 2.4286 -4.3159 23 6 0.9558 3.3429 -5.3521 24 6 2.0896 4.0683 -5.6685 25 6 3.2542 3.8796 -4.9492 26 6 3.2835 2.9687 -3.9066 27 9 4.4197 2.7884 -3.1981 28 1 -0.3634 -1.0255 0.0663 29 1 -0.3633 0.5702 0.8550 30 1 -0.3633 0.4554 -0.9212 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9698 3.1856 1.0680 34 1 1.3547 1.7681 1.9516 35 1 3.6518 0.8409 2.0632 36 1 4.2668 2.2585 1.1796 37 1 2.8502 3.1693 3.4466 38 1 3.8994 4.5049 6.3176 39 1 3.3611 -0.4568 -1.8626 40 1 3.1971 -0.2624 -3.6241 41 1 4.2787 0.8135 -2.7065 42 1 -0.2710 -0.7404 -3.5199 43 1 0.8348 0.2738 -4.4773 44 1 1.4670 -1.1209 -3.5699 45 1 0.0995 1.8628 -4.0694 46 1 0.0461 3.4908 -5.9151 47 1 2.0651 4.7821 -6.4785 48 1 4.1398 4.4461 -5.1968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668449851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:09 Heat of formation + Delta-G solvation = -83.288433 kcal Electronic energy + Delta-G solvation = -31156.786811 eV Core-core repulsion = 26934.064068 eV Total energy + Delta-G solvation = -4222.722743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93281 -42.00202 -40.00878 -38.68099 -37.60919 -36.31226 -33.76432 -33.41854 -31.73233 -31.49154 -30.63644 -29.31540 -28.14237 -25.91393 -25.05055 -24.15616 -23.74690 -23.63604 -22.24888 -20.38510 -19.26683 -18.83211 -18.57825 -17.86430 -17.25284 -17.08549 -16.69698 -16.61714 -16.52150 -16.02726 -15.89179 -15.72046 -15.35599 -15.14214 -14.94975 -14.78384 -14.73941 -14.25130 -14.15134 -13.91397 -13.57957 -13.41685 -13.22499 -13.07226 -12.94258 -12.93464 -12.76585 -12.67850 -12.49475 -12.41384 -12.27435 -12.15142 -11.92782 -11.88166 -11.60965 -11.02523 -10.93428 -10.68856 -9.93084 -9.75422 -9.61679 -9.10121 -8.00159 -5.31551 0.11554 0.23449 1.36977 1.43691 1.47269 1.55469 1.85597 2.52669 2.58761 2.63106 3.26079 3.32550 3.36826 3.44477 3.73737 3.85810 3.98874 4.05067 4.11330 4.16835 4.22662 4.35967 4.37013 4.45450 4.48953 4.52538 4.55981 4.58980 4.63635 4.71635 4.83389 4.88158 4.93963 5.00901 5.03869 5.08638 5.11352 5.14057 5.17151 5.31825 5.40711 5.42723 5.53852 5.65125 5.92246 5.96087 6.20921 6.35438 7.04414 7.26928 7.97414 8.24214 9.23255 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.003088 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.698122 B = 9066.303518 C =10081.595863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.124 3.876 5 C 0.152 3.848 6 N -0.742 5.742 7 C -0.253 4.253 8 H 0.072 0.928 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.521 3.479 16 O -0.566 6.566 17 C 0.160 3.840 18 C -0.185 4.185 19 O -0.357 6.357 20 C -0.001 4.001 21 C -0.157 4.157 22 C -0.082 4.082 23 C -0.132 4.132 24 C -0.081 4.081 25 C -0.174 4.174 26 C 0.102 3.898 27 F -0.149 7.149 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.029 0.971 36 H -0.003 1.003 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.164 0.836 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 -11.554 -28.466 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.020 4.020 3 N -0.323 5.323 4 C 0.001 3.999 5 C 0.024 3.976 6 N -0.385 5.385 7 C -0.385 4.385 8 H 0.090 0.910 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.215 1.215 13 H -0.214 1.214 14 H -0.192 1.192 15 C 0.308 3.692 16 O -0.444 6.444 17 C 0.117 3.883 18 C -0.242 4.242 19 O -0.276 6.276 20 C -0.096 4.096 21 C -0.159 4.159 22 C -0.099 4.099 23 C -0.149 4.149 24 C -0.099 4.099 25 C -0.193 4.193 26 C 0.083 3.917 27 F -0.128 7.128 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.175 0.825 46 H 0.182 0.818 47 H 0.182 0.818 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.900 -11.063 -28.232 32.222 hybrid contribution 1.322 0.627 1.145 1.858 sum -9.579 -10.436 -27.087 30.567 Atomic orbital electron populations 1.22158 0.94008 1.02983 1.02209 1.22014 0.96376 0.79795 1.03825 1.47938 1.63288 1.15803 1.05228 1.21311 0.96955 0.96604 0.85058 1.20908 0.95335 0.94725 0.86627 1.42382 1.15468 1.58267 1.22415 1.19586 0.92971 1.24364 1.01534 0.91027 1.25643 1.01336 0.99974 0.99528 1.69825 1.32098 1.36280 1.23543 0.85067 0.78666 0.78065 0.77498 1.21497 1.21422 1.19211 1.20609 0.77275 0.85639 0.85699 1.90753 1.45281 1.21146 1.87247 1.19938 0.88472 0.90840 0.89073 1.22620 0.97162 0.99229 1.05168 1.88196 1.35475 1.59996 1.43977 1.23381 1.03996 0.93912 0.88341 1.20100 0.94669 1.01205 0.99897 1.21295 0.96328 0.97859 0.94462 1.21603 0.99862 0.95697 0.97766 1.21460 0.91072 0.98495 0.98885 1.21431 1.01878 0.99517 0.96481 1.17879 0.82440 0.98784 0.92587 1.91435 1.49436 1.94048 1.77840 0.89649 0.94377 0.90569 0.87615 0.90928 0.92523 0.88746 0.95279 0.98502 0.79245 0.93709 0.89573 0.87875 0.91755 0.86503 0.92243 0.92184 0.82476 0.81761 0.81830 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.76 71.98 0.70 -2.20 16 2 C 0.10 2.26 5.53 86.38 0.48 2.74 16 3 N -0.59 -18.75 2.48 -821.81 -2.03 -20.79 16 4 C 0.12 4.80 5.51 86.38 0.48 5.27 16 5 C 0.15 7.05 6.58 86.38 0.57 7.62 16 6 N -0.74 -41.60 5.60 -343.44 -1.92 -43.53 16 7 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 9 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 10 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 11 Si 0.98 48.16 29.55 68.60 2.03 50.19 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 C 0.52 17.82 6.48 87.66 0.57 18.39 16 16 O -0.57 -24.95 13.95 -3.04 -0.04 -24.99 16 17 C 0.16 3.85 0.43 -12.29 -0.01 3.85 16 18 C -0.18 -3.84 7.51 71.98 0.54 -3.30 16 19 O -0.36 -6.17 4.25 -148.98 -0.63 -6.80 16 20 C 0.00 -0.01 9.17 113.37 1.04 1.03 16 21 C -0.16 -3.81 4.22 -19.82 -0.08 -3.90 16 22 C -0.08 -1.43 7.67 22.26 0.17 -1.26 16 23 C -0.13 -1.80 10.04 22.27 0.22 -1.57 16 24 C -0.08 -1.23 10.04 22.26 0.22 -1.00 16 25 C -0.17 -3.79 10.03 22.31 0.22 -3.56 16 26 C 0.10 2.86 6.17 22.38 0.14 3.00 16 27 F -0.15 -5.09 13.32 44.97 0.60 -4.50 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.82 8.01 -2.39 -0.02 0.80 16 30 H 0.08 1.43 5.85 -2.39 -0.01 1.42 16 31 H 0.11 1.96 3.96 -2.39 -0.01 1.95 16 32 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 33 H 0.06 2.48 7.49 -2.39 -0.02 2.46 16 34 H 0.09 3.30 7.94 -2.39 -0.02 3.28 16 35 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.38 21.93 7.67 -92.71 -0.71 21.22 16 38 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.09 1.62 6.29 -2.39 -0.02 1.60 16 40 H 0.10 1.51 6.62 -2.39 -0.02 1.49 16 41 H 0.06 1.68 5.86 -2.39 -0.01 1.67 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.06 0.52 5.28 -2.39 -0.01 0.51 16 44 H 0.06 0.44 6.71 -2.39 -0.02 0.42 16 45 H 0.16 2.09 5.80 -2.91 -0.02 2.07 16 46 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 47 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -81.16 376.63 5.12 -76.03 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.28 Total: 28.96 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.57 Total: 6.76 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -3.68 Total: -125.66 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.68 Total: -31.79 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.60 Total: -4.50 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -81.16 5.12 -76.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668449851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.257 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds