Wall clock time and date at job start Tue Mar 31 2020 20:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35949 * 117.00146 * 2 1 4 4 C 1.38656 * 120.06572 * 359.97438 * 3 2 1 5 5 C 1.38181 * 119.97272 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09210 * 359.75394 * 5 4 3 7 7 C 1.38261 * 120.12673 * 0.50085 * 6 5 4 8 8 C 1.50700 * 119.98367 * 179.76862 * 7 6 5 9 9 C 1.53002 * 109.47143 * 264.72526 * 8 7 6 10 10 C 1.50700 * 109.47143 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00051 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00063 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99827 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47469 * 35.00755 * 13 12 10 15 15 C 1.52996 * 109.47554 * 275.00480 * 13 12 10 16 16 C 1.53006 * 109.46852 * 155.00362 * 13 12 10 17 17 N 1.46496 * 109.47020 * 305.00030 * 16 13 12 18 18 C 1.46506 * 120.00056 * 269.99841 * 17 16 13 19 19 C 1.36939 * 119.99722 * 90.00106 * 17 16 13 20 20 H 1.07997 * 120.00351 * 337.98720 * 19 17 16 21 21 C 1.38811 * 119.99744 * 157.70961 * 19 17 16 22 22 N 1.31616 * 120.00173 * 155.58113 * 21 19 17 23 23 Si 1.86803 * 120.00117 * 335.58254 * 21 19 17 24 24 H 1.48500 * 109.47031 * 84.81040 * 23 21 19 25 25 H 1.48504 * 109.47169 * 204.80993 * 23 21 19 26 26 H 1.48493 * 109.47076 * 324.80757 * 23 21 19 27 27 C 1.38331 * 120.02724 * 359.50044 * 7 6 5 28 28 F 1.35098 * 120.04551 * 180.22928 * 27 7 6 29 29 H 1.08997 * 109.46734 * 59.99677 * 1 2 3 30 30 H 1.08997 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46868 * 300.00368 * 1 2 3 32 32 H 1.07999 * 120.01517 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.95475 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.93691 * 180.27395 * 6 5 4 35 35 H 1.09000 * 109.46781 * 144.72843 * 8 7 6 36 36 H 1.08997 * 109.47107 * 24.73050 * 8 7 6 37 37 H 1.09000 * 109.47023 * 60.00465 * 9 8 7 38 38 H 1.09001 * 109.47262 * 300.00653 * 9 8 7 39 39 H 0.96994 * 119.99782 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47261 * 300.00150 * 15 13 12 41 41 H 1.09003 * 109.46995 * 60.00201 * 15 13 12 42 42 H 1.08997 * 109.47634 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47019 * 185.00276 * 16 13 12 44 44 H 1.08993 * 109.46718 * 65.00144 * 16 13 12 45 45 H 1.08996 * 109.46982 * 274.42357 * 18 17 16 46 46 H 1.08998 * 109.46993 * 34.42428 * 18 17 16 47 47 H 1.09003 * 109.46785 * 154.42395 * 18 17 16 48 48 H 0.96999 * 120.00801 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3750 -0.0005 5 6 1.9218 3.6052 -0.0011 6 6 3.3026 3.6775 0.0041 7 6 4.0581 2.5196 -0.0007 8 6 5.5629 2.6022 -0.0003 9 6 6.0794 2.5037 -1.4372 10 6 7.5842 2.5857 -1.4368 11 8 8.1844 2.7101 -0.3903 12 7 8.2630 2.5196 -2.5992 13 6 9.7258 2.5987 -2.5987 14 1 10.1161 2.1058 -1.7083 15 6 10.1572 4.0666 -2.5995 16 6 10.2744 1.9052 -3.8474 17 7 9.7636 0.5336 -3.9083 18 6 10.5111 -0.5554 -3.2743 19 6 8.5874 0.2692 -4.5579 20 1 7.8663 1.0583 -4.7117 21 6 8.3247 -1.0117 -5.0239 22 7 7.0813 -1.4054 -5.2009 23 14 9.7358 -2.1766 -5.3999 24 1 10.1545 -2.8656 -4.1528 25 1 9.2937 -3.1840 -6.3974 26 1 10.8808 -1.4064 -5.9483 27 6 3.4334 1.2854 -0.0002 28 9 4.1714 0.1538 -0.0002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2139 2.3201 -0.0005 33 1 1.3344 4.5115 -0.0019 34 1 3.7919 4.6404 0.0081 35 1 5.9716 1.7819 0.5897 36 1 5.8745 3.5524 0.4335 37 1 5.6707 3.3240 -2.0272 38 1 5.7677 1.5536 -1.8710 39 1 7.7829 2.4197 -3.4361 40 1 9.7670 4.5596 -3.4900 41 1 9.7664 4.5607 -1.7100 42 1 11.2456 4.1255 -2.5987 43 1 11.3634 1.8858 -3.8033 44 1 9.9564 2.4512 -4.7355 45 1 11.2676 -0.9271 -3.9653 46 1 10.9949 -0.1857 -2.3702 47 1 9.8267 -1.3634 -3.0157 48 1 6.8976 -2.3006 -5.5262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669821500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:38 Heat of formation + Delta-G solvation = -74.806498 kcal Electronic energy + Delta-G solvation = -29763.297738 eV Core-core repulsion = 25540.942800 eV Total energy + Delta-G solvation = -4222.354938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.63924 -40.15089 -39.31013 -37.85087 -36.58318 -34.17219 -33.60705 -31.63348 -30.68972 -30.37582 -29.20211 -27.49828 -26.77825 -25.65572 -24.72112 -22.66915 -22.05793 -21.22400 -20.14115 -19.71111 -18.17334 -17.15624 -17.07522 -16.92197 -16.32139 -16.15299 -15.71015 -15.25083 -15.07255 -14.98763 -14.83605 -14.56522 -14.15321 -13.97518 -13.48317 -13.40676 -13.13204 -12.73165 -12.65314 -12.58344 -12.48881 -12.20003 -12.05866 -12.03617 -11.94759 -11.67319 -11.63263 -11.20378 -11.10855 -11.08529 -10.89626 -10.78370 -10.42104 -10.23044 -10.05514 -9.50017 -9.31173 -8.78890 -8.61211 -8.36730 -8.30762 -7.03564 -5.97885 -3.29147 0.99468 1.14338 2.97498 3.23821 3.36735 3.41113 3.50887 3.53204 3.85439 4.20248 4.53328 4.55433 4.64463 4.84022 4.91049 4.94429 5.01606 5.07007 5.10479 5.22930 5.25412 5.35777 5.41173 5.48161 5.59084 5.71538 5.79348 5.83546 5.89328 5.94891 6.02121 6.04336 6.13068 6.17025 6.28338 6.28748 6.31002 6.36690 6.43036 6.52837 6.54355 6.72545 6.80344 7.14564 7.18846 7.86782 8.18645 8.27133 8.83003 8.93725 9.71004 10.04363 11.17185 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.003257 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.857947 B = 8593.723589 C =10465.321173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.095 3.905 4 C -0.190 4.190 5 C -0.091 4.091 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.062 4.062 9 C -0.136 4.136 10 C 0.518 3.482 11 O -0.564 6.564 12 N -0.696 5.696 13 C 0.119 3.881 14 H 0.076 0.924 15 C -0.158 4.158 16 C 0.141 3.859 17 N -0.608 5.608 18 C 0.105 3.895 19 C -0.265 4.265 20 H 0.085 0.915 21 C 0.027 3.973 22 N -0.900 5.900 23 Si 0.886 3.114 24 H -0.287 1.287 25 H -0.307 1.307 26 H -0.279 1.279 27 C 0.077 3.923 28 F -0.124 7.124 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.406 0.594 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.007 0.993 46 H 0.032 0.968 47 H 0.060 0.940 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 11.384 9.554 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.049 3.951 4 C -0.209 4.209 5 C -0.109 4.109 6 C -0.144 4.144 7 C -0.075 4.075 8 C -0.099 4.099 9 C -0.176 4.176 10 C 0.304 3.696 11 O -0.444 6.444 12 N -0.347 5.347 13 C 0.011 3.989 14 H 0.095 0.905 15 C -0.217 4.217 16 C 0.013 3.987 17 N -0.331 5.331 18 C -0.040 4.040 19 C -0.393 4.393 20 H 0.102 0.898 21 C -0.173 4.173 22 N -0.543 5.543 23 Si 0.717 3.283 24 H -0.215 1.215 25 H -0.235 1.235 26 H -0.205 1.205 27 C 0.057 3.943 28 F -0.102 7.102 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.243 0.757 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.512 11.068 10.199 18.358 hybrid contribution 0.269 -1.027 -0.771 1.313 sum -10.243 10.041 9.428 17.164 Atomic orbital electron populations 1.23100 0.78103 1.04249 1.01299 1.86174 1.21562 1.25801 1.88632 1.19021 0.90815 0.85661 0.99587 1.21088 1.00090 0.91584 1.08114 1.20947 0.94517 0.97063 0.98368 1.20886 0.93436 0.97646 1.02475 1.19901 0.97113 0.90898 0.99614 1.20267 0.88068 1.04759 0.96831 1.21605 0.92999 1.05187 0.97845 1.20412 0.89616 0.75689 0.83869 1.90623 1.70845 1.51270 1.31652 1.45956 1.07242 1.72254 1.09244 1.21705 0.80596 0.94811 1.01764 0.90549 1.22120 1.00922 0.97060 1.01614 1.21115 0.96445 0.86118 0.94988 1.44096 1.25242 1.01749 1.62055 1.21369 0.95551 0.92323 0.94806 1.18731 0.92271 0.96526 1.31732 0.89750 1.25135 0.95864 0.97128 0.99149 1.69879 1.17692 1.18827 1.47866 0.87027 0.83374 0.80516 0.77363 1.21453 1.23488 1.20543 1.16883 0.85856 0.83030 1.08575 1.91548 1.76238 1.48510 1.93920 0.92420 0.87993 0.92625 0.84755 0.85174 0.84804 0.89657 0.89624 0.89160 0.88074 0.75695 0.92800 0.92752 0.92224 0.92853 0.92181 0.97501 0.94980 0.92122 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.09 10.36 -19.58 -0.20 -4.29 16 3 C 0.10 1.27 6.69 -39.18 -0.26 1.00 16 4 C -0.19 -1.91 9.04 -39.45 -0.36 -2.26 16 5 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 6 C -0.13 -1.31 9.67 -39.56 -0.38 -1.69 16 7 C -0.07 -0.98 5.14 -104.58 -0.54 -1.52 16 8 C -0.06 -0.88 4.41 -27.88 -0.12 -1.00 16 9 C -0.14 -2.09 5.68 -27.88 -0.16 -2.25 16 10 C 0.52 9.41 7.79 -10.98 -0.09 9.32 16 11 O -0.56 -11.63 15.64 5.55 0.09 -11.55 16 12 N -0.70 -12.51 4.49 -53.80 -0.24 -12.75 16 13 C 0.12 2.06 2.88 -67.93 -0.20 1.86 16 14 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 16 C 0.14 2.59 5.34 -4.04 -0.02 2.57 16 17 N -0.61 -13.93 2.63 -181.12 -0.48 -14.41 16 18 C 0.10 2.33 8.33 59.85 0.50 2.83 16 19 C -0.26 -6.93 9.23 -15.06 -0.14 -7.07 16 20 H 0.09 2.24 6.41 -52.49 -0.34 1.90 16 21 C 0.03 0.76 5.16 -17.43 -0.09 0.67 16 22 N -0.90 -26.89 13.97 55.49 0.78 -26.12 16 23 Si 0.89 22.49 24.05 -169.99 -4.09 18.41 16 24 H -0.29 -7.12 6.34 56.52 0.36 -6.76 16 25 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.28 -7.03 6.92 56.52 0.39 -6.64 16 27 C 0.08 1.16 7.25 -39.30 -0.28 0.87 16 28 F -0.12 -2.23 16.41 2.25 0.04 -2.19 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 36 H 0.09 1.11 8.01 -51.93 -0.42 0.70 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.41 7.38 6.51 -40.82 -0.27 7.11 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 45 H 0.01 0.16 5.83 -51.93 -0.30 -0.14 16 46 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 47 H 0.06 1.48 5.70 -51.93 -0.30 1.18 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -33.50 390.78 -6.78 -40.28 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.37 Total: 5.30 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.19 Total: 1.44 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.06 Total: -53.27 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.12 Total: -15.84 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.09 Total: 18.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.50 -6.78 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669821500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.530 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds