Wall clock time and date at job start Tue Mar 31 2020 20:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35949 * 117.00146 * 2 1 4 4 C 1.38656 * 120.06572 * 359.97438 * 3 2 1 5 5 C 1.38181 * 119.97272 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09210 * 359.75394 * 5 4 3 7 7 C 1.38261 * 120.12673 * 0.50085 * 6 5 4 8 8 C 1.50700 * 119.98367 * 179.76862 * 7 6 5 9 9 C 1.53002 * 109.47143 * 264.72526 * 8 7 6 10 10 C 1.50700 * 109.47143 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00051 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00063 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99827 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47469 * 35.00755 * 13 12 10 15 15 C 1.52996 * 109.47554 * 275.00480 * 13 12 10 16 16 C 1.53006 * 109.46852 * 155.00362 * 13 12 10 17 17 N 1.46496 * 109.47020 * 305.00030 * 16 13 12 18 18 C 1.46506 * 120.00056 * 269.99841 * 17 16 13 19 19 C 1.36939 * 119.99722 * 90.00106 * 17 16 13 20 20 H 1.07997 * 120.00351 * 337.98720 * 19 17 16 21 21 C 1.38811 * 119.99744 * 157.70961 * 19 17 16 22 22 N 1.31616 * 120.00173 * 155.58113 * 21 19 17 23 23 Si 1.86803 * 120.00117 * 335.58254 * 21 19 17 24 24 H 1.48500 * 109.47031 * 84.81040 * 23 21 19 25 25 H 1.48504 * 109.47169 * 204.80993 * 23 21 19 26 26 H 1.48493 * 109.47076 * 324.80757 * 23 21 19 27 27 C 1.38331 * 120.02724 * 359.50044 * 7 6 5 28 28 F 1.35098 * 120.04551 * 180.22928 * 27 7 6 29 29 H 1.08997 * 109.46734 * 59.99677 * 1 2 3 30 30 H 1.08997 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46868 * 300.00368 * 1 2 3 32 32 H 1.07999 * 120.01517 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.95475 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.93691 * 180.27395 * 6 5 4 35 35 H 1.09000 * 109.46781 * 144.72843 * 8 7 6 36 36 H 1.08997 * 109.47107 * 24.73050 * 8 7 6 37 37 H 1.09000 * 109.47023 * 60.00465 * 9 8 7 38 38 H 1.09001 * 109.47262 * 300.00653 * 9 8 7 39 39 H 0.96994 * 119.99782 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47261 * 300.00150 * 15 13 12 41 41 H 1.09003 * 109.46995 * 60.00201 * 15 13 12 42 42 H 1.08997 * 109.47634 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47019 * 185.00276 * 16 13 12 44 44 H 1.08993 * 109.46718 * 65.00144 * 16 13 12 45 45 H 1.08996 * 109.46982 * 274.42357 * 18 17 16 46 46 H 1.08998 * 109.46993 * 34.42428 * 18 17 16 47 47 H 1.09003 * 109.46785 * 154.42395 * 18 17 16 48 48 H 0.96999 * 120.00801 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3750 -0.0005 5 6 1.9218 3.6052 -0.0011 6 6 3.3026 3.6775 0.0041 7 6 4.0581 2.5196 -0.0007 8 6 5.5629 2.6022 -0.0003 9 6 6.0794 2.5037 -1.4372 10 6 7.5842 2.5857 -1.4368 11 8 8.1844 2.7101 -0.3903 12 7 8.2630 2.5196 -2.5992 13 6 9.7258 2.5987 -2.5987 14 1 10.1161 2.1058 -1.7083 15 6 10.1572 4.0666 -2.5995 16 6 10.2744 1.9052 -3.8474 17 7 9.7636 0.5336 -3.9083 18 6 10.5111 -0.5554 -3.2743 19 6 8.5874 0.2692 -4.5579 20 1 7.8663 1.0583 -4.7117 21 6 8.3247 -1.0117 -5.0239 22 7 7.0813 -1.4054 -5.2009 23 14 9.7358 -2.1766 -5.3999 24 1 10.1545 -2.8656 -4.1528 25 1 9.2937 -3.1840 -6.3974 26 1 10.8808 -1.4064 -5.9483 27 6 3.4334 1.2854 -0.0002 28 9 4.1714 0.1538 -0.0002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2139 2.3201 -0.0005 33 1 1.3344 4.5115 -0.0019 34 1 3.7919 4.6404 0.0081 35 1 5.9716 1.7819 0.5897 36 1 5.8745 3.5524 0.4335 37 1 5.6707 3.3240 -2.0272 38 1 5.7677 1.5536 -1.8710 39 1 7.7829 2.4197 -3.4361 40 1 9.7670 4.5596 -3.4900 41 1 9.7664 4.5607 -1.7100 42 1 11.2456 4.1255 -2.5987 43 1 11.3634 1.8858 -3.8033 44 1 9.9564 2.4512 -4.7355 45 1 11.2676 -0.9271 -3.9653 46 1 10.9949 -0.1857 -2.3702 47 1 9.8267 -1.3634 -3.0157 48 1 6.8976 -2.3006 -5.5262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669821500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:37 Heat of formation + Delta-G solvation = -96.835168 kcal Electronic energy + Delta-G solvation = -29764.252973 eV Core-core repulsion = 25540.942800 eV Total energy + Delta-G solvation = -4223.310173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.84020 -41.07022 -40.71352 -38.79951 -38.20560 -35.79887 -34.76043 -33.57905 -32.10858 -31.23807 -30.28362 -28.39740 -28.20024 -27.52165 -25.86010 -23.68076 -23.52936 -22.38640 -21.55642 -21.17167 -19.12883 -18.86991 -18.11635 -18.02352 -17.71756 -17.35783 -17.15948 -16.95366 -16.39846 -16.06161 -15.87413 -15.72024 -15.48486 -15.27379 -15.10257 -14.60461 -14.44168 -14.31056 -14.19226 -13.85459 -13.76940 -13.63717 -13.45720 -13.08633 -12.95253 -12.90948 -12.68110 -12.51247 -12.47495 -12.17361 -12.07308 -12.07048 -11.97311 -11.94749 -11.86956 -11.52420 -10.77153 -10.66798 -9.85804 -9.74388 -9.21368 -8.96664 -8.12958 -5.39121 0.09621 0.27008 1.33862 1.42528 1.50031 1.76944 2.19556 2.40192 2.47697 2.62627 3.06715 3.29513 3.41318 3.58316 3.84786 3.95012 4.04443 4.05739 4.10497 4.25557 4.29790 4.37809 4.38652 4.39473 4.45402 4.50280 4.55667 4.63306 4.67467 4.70311 4.74268 4.88851 4.90551 4.91713 4.99936 5.06102 5.08649 5.14705 5.18524 5.32902 5.40969 5.44570 5.70601 5.74759 5.86076 6.13848 6.32464 6.73447 6.92104 7.40117 7.66689 8.02821 9.05123 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.003257 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.857947 B = 8593.723589 C =10465.321173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.080 3.920 4 C -0.182 4.182 5 C -0.076 4.076 6 C -0.123 4.123 7 C -0.084 4.084 8 C -0.053 4.053 9 C -0.127 4.127 10 C 0.513 3.487 11 O -0.590 6.590 12 N -0.699 5.699 13 C 0.121 3.879 14 H 0.053 0.947 15 C -0.146 4.146 16 C 0.140 3.860 17 N -0.621 5.621 18 C 0.103 3.897 19 C -0.238 4.238 20 H 0.076 0.924 21 C -0.033 4.033 22 N -0.948 5.948 23 Si 0.937 3.063 24 H -0.282 1.282 25 H -0.318 1.318 26 H -0.270 1.270 27 C 0.026 3.974 28 F -0.157 7.157 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.162 0.838 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.405 0.595 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.015 0.985 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.241 14.493 9.657 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.034 3.966 4 C -0.201 4.201 5 C -0.093 4.093 6 C -0.141 4.141 7 C -0.085 4.085 8 C -0.090 4.090 9 C -0.167 4.167 10 C 0.300 3.700 11 O -0.473 6.473 12 N -0.349 5.349 13 C 0.014 3.986 14 H 0.072 0.928 15 C -0.205 4.205 16 C 0.014 3.986 17 N -0.345 5.345 18 C -0.042 4.042 19 C -0.367 4.367 20 H 0.093 0.907 21 C -0.228 4.228 22 N -0.594 5.594 23 Si 0.767 3.233 24 H -0.209 1.209 25 H -0.248 1.248 26 H -0.195 1.195 27 C 0.006 3.994 28 F -0.136 7.136 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.180 0.820 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.241 0.759 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.033 0.967 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.764 14.209 10.310 20.593 hybrid contribution 0.301 -1.881 -0.743 2.045 sum -10.462 12.328 9.568 18.788 Atomic orbital electron populations 1.23429 0.75578 1.05712 1.02928 1.86125 1.24342 1.26539 1.88809 1.19270 0.90372 0.86887 1.00083 1.21523 1.01583 0.90667 1.06284 1.21471 0.94188 0.98201 0.95478 1.21252 0.94205 0.97475 1.01152 1.19885 0.96372 0.91385 1.00889 1.20131 0.89255 1.04143 0.95515 1.21560 0.91208 1.04827 0.99112 1.20844 0.90662 0.75014 0.83441 1.90601 1.71603 1.52596 1.32460 1.46065 1.07781 1.71932 1.09100 1.21671 0.80065 0.96871 1.00034 0.92838 1.22002 1.02391 0.94175 1.01888 1.21358 0.98045 0.83547 0.95680 1.44279 1.24681 1.03814 1.61677 1.21369 0.95062 0.91698 0.96080 1.18871 0.92961 0.95743 1.29154 0.90685 1.25676 0.97270 0.99051 1.00778 1.69996 1.19417 1.19108 1.50880 0.86191 0.81227 0.78908 0.76931 1.20877 1.24759 1.19529 1.17483 0.87108 0.82831 1.11969 1.91445 1.77191 1.50330 1.94597 0.91017 0.86873 0.90550 0.81495 0.80889 0.82007 0.92865 0.88072 0.86082 0.90801 0.75870 0.91318 0.93620 0.89934 0.90061 0.91238 0.96690 0.92295 0.94794 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -9.39 10.36 -92.97 -0.96 -10.35 16 3 C 0.08 2.14 6.69 22.53 0.15 2.29 16 4 C -0.18 -3.18 9.04 22.36 0.20 -2.98 16 5 C -0.08 -1.08 10.04 22.26 0.22 -0.86 16 6 C -0.12 -2.24 9.67 22.28 0.22 -2.02 16 7 C -0.08 -2.25 5.14 -19.84 -0.10 -2.35 16 8 C -0.05 -1.55 4.41 29.85 0.13 -1.42 16 9 C -0.13 -4.02 5.68 29.85 0.17 -3.85 16 10 C 0.51 18.90 7.79 87.66 0.68 19.58 16 11 O -0.59 -24.75 15.64 -3.04 -0.05 -24.79 16 12 N -0.70 -24.90 4.49 -442.53 -1.99 -26.89 16 13 C 0.12 3.99 2.88 44.99 0.13 4.12 16 14 H 0.05 2.04 7.58 -2.38 -0.02 2.02 16 15 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 16 C 0.14 4.78 5.34 86.38 0.46 5.24 16 17 N -0.62 -27.71 2.63 -726.93 -1.91 -29.62 16 18 C 0.10 4.45 8.33 127.77 1.06 5.52 16 19 C -0.24 -12.50 9.23 84.03 0.78 -11.73 16 20 H 0.08 4.03 6.41 -2.91 -0.02 4.01 16 21 C -0.03 -1.86 5.16 84.86 0.44 -1.43 16 22 N -0.95 -58.62 13.97 21.65 0.30 -58.32 16 23 Si 0.94 46.87 24.05 68.60 1.65 48.52 16 24 H -0.28 -13.69 6.34 99.48 0.63 -13.06 16 25 H -0.32 -16.41 7.11 99.48 0.71 -15.70 16 26 H -0.27 -12.92 6.92 99.48 0.69 -12.23 16 27 C 0.03 0.83 7.25 22.45 0.16 0.99 16 28 F -0.16 -6.29 16.41 44.97 0.74 -5.55 16 29 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 32 H 0.17 1.73 6.30 -2.91 -0.02 1.71 16 33 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.05 1.88 7.75 -2.39 -0.02 1.86 16 36 H 0.10 2.59 8.01 -2.39 -0.02 2.57 16 37 H 0.12 2.99 8.14 -2.39 -0.02 2.98 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.40 14.66 6.51 -92.71 -0.60 14.06 16 40 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 44 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 45 H 0.02 0.64 5.83 -2.39 -0.01 0.63 16 46 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 47 H 0.03 1.64 5.70 -2.39 -0.01 1.63 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -77.03 390.78 4.56 -72.47 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.27 Total: 25.09 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.50 Total: 9.45 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.60 Total: -114.83 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.01 Total: -35.14 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.74 Total: -5.55 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.65 Total: 48.52 kcal Total: -77.03 4.56 -72.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669821500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.362 kcal (2) G-P(sol) polarization free energy of solvation -77.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds