Wall clock time and date at job start Tue Mar 31 2020 20:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35961 * 117.00288 * 2 1 4 4 C 1.38669 * 120.06054 * 359.97438 * 3 2 1 5 5 C 1.38172 * 119.96915 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.09344 * 359.74617 * 5 4 3 7 7 C 1.38251 * 120.12671 * 0.50820 * 6 5 4 8 8 C 1.50702 * 119.98539 * 179.76845 * 7 6 5 9 9 C 1.53005 * 109.46873 * 264.72512 * 8 7 6 10 10 C 1.50702 * 109.46873 * 180.02562 * 9 8 7 11 11 O 1.21276 * 119.99850 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99764 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99841 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47091 * 324.99787 * 13 12 10 15 15 C 1.52997 * 109.47201 * 84.99978 * 13 12 10 16 16 C 1.53004 * 109.46939 * 205.00159 * 13 12 10 17 17 N 1.46502 * 109.47008 * 54.99720 * 16 13 12 18 18 C 1.46497 * 119.99771 * 269.99811 * 17 16 13 19 19 C 1.36931 * 119.99878 * 90.00406 * 17 16 13 20 20 H 1.08003 * 120.00580 * 23.61260 * 19 17 16 21 21 C 1.38816 * 120.00162 * 203.61024 * 19 17 16 22 22 N 1.31620 * 119.99254 * 11.31565 * 21 19 17 23 23 Si 1.86800 * 120.00220 * 191.30764 * 21 19 17 24 24 H 1.48498 * 109.46957 * 60.00606 * 23 21 19 25 25 H 1.48501 * 109.46663 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47339 * 300.00250 * 23 21 19 27 27 C 1.38335 * 120.03030 * 359.49129 * 7 6 5 28 28 F 1.35101 * 120.04811 * 180.22992 * 27 7 6 29 29 H 1.09009 * 109.46874 * 300.00230 * 1 2 3 30 30 H 1.09004 * 109.47155 * 59.99390 * 1 2 3 31 31 H 1.08995 * 109.47808 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.01237 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.95668 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.93472 * 180.28004 * 6 5 4 35 35 H 1.09003 * 109.47026 * 144.72776 * 8 7 6 36 36 H 1.08994 * 109.47247 * 24.71947 * 8 7 6 37 37 H 1.09005 * 109.47144 * 299.99582 * 9 8 7 38 38 H 1.09001 * 109.47266 * 59.99799 * 9 8 7 39 39 H 0.96998 * 119.99984 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46616 * 180.02562 * 15 13 12 41 41 H 1.08999 * 109.47191 * 299.99877 * 15 13 12 42 42 H 1.08998 * 109.47254 * 59.99909 * 15 13 12 43 43 H 1.08996 * 109.47134 * 174.99627 * 16 13 12 44 44 H 1.08998 * 109.47247 * 294.99893 * 16 13 12 45 45 H 1.09002 * 109.47079 * 94.54002 * 18 17 16 46 46 H 1.09006 * 109.46798 * 214.53647 * 18 17 16 47 47 H 1.08993 * 109.47643 * 334.53289 * 18 17 16 48 48 H 0.97011 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3752 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3024 3.6776 0.0042 7 6 4.0580 2.5199 -0.0005 8 6 5.5627 2.6025 0.0000 9 6 6.0794 2.5040 -1.4368 10 6 7.5841 2.5860 -1.4362 11 8 8.1842 2.7113 -0.3898 12 7 8.2630 2.5200 -2.5987 13 6 9.7259 2.5991 -2.5981 14 1 10.0527 3.2789 -1.8112 15 6 10.3118 1.2083 -2.3464 16 6 10.2091 3.1184 -3.9538 17 7 9.5550 4.3957 -4.2487 18 6 8.2804 4.4165 -4.9706 19 6 10.1351 5.5702 -3.8497 20 1 11.1999 5.6144 -3.6744 21 6 9.3547 6.7041 -3.6706 22 7 8.0422 6.6053 -3.6646 23 14 10.1671 8.3700 -3.4378 24 1 10.9939 8.6883 -4.6296 25 1 9.1218 9.4109 -3.2676 26 1 11.0314 8.3350 -2.2308 27 6 3.4334 1.2856 0.0000 28 9 4.1713 0.1539 0.0001 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2138 2.3201 -0.0014 33 1 1.3342 4.5116 -0.0019 34 1 3.7916 4.6405 0.0084 35 1 5.9714 1.7821 0.5901 36 1 5.8743 3.5526 0.4337 37 1 5.7678 1.5538 -1.8707 38 1 5.6706 3.3243 -2.0269 39 1 7.7830 2.4201 -3.4356 40 1 11.4002 1.2674 -2.3455 41 1 9.9676 0.8384 -1.3806 42 1 9.9850 0.5286 -3.1333 43 1 11.2892 3.2617 -3.9240 44 1 9.9598 2.3949 -4.7299 45 1 7.4584 4.4498 -4.2556 46 1 8.2403 5.2972 -5.6117 47 1 8.1943 3.5181 -5.5817 48 1 7.4968 7.3977 -3.5390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669821501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:43 Heat of formation + Delta-G solvation = -80.156497 kcal Electronic energy + Delta-G solvation = -29677.475899 eV Core-core repulsion = 25454.888968 eV Total energy + Delta-G solvation = -4222.586932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.80342 -40.22272 -39.23713 -37.89557 -36.34100 -34.04186 -33.60147 -31.31016 -30.49879 -30.33641 -29.18699 -27.58631 -26.15221 -25.59599 -24.70279 -22.72248 -21.91989 -21.19525 -20.12523 -19.63013 -18.25457 -17.23775 -17.07429 -16.77169 -16.57398 -16.28360 -15.45630 -15.15766 -15.08157 -14.92183 -14.74906 -14.60001 -13.96278 -13.81320 -13.52034 -13.26614 -12.97922 -12.94452 -12.64221 -12.56534 -12.33669 -12.10082 -11.98893 -11.81392 -11.70761 -11.39733 -11.25682 -11.15619 -11.04373 -10.83322 -10.77591 -10.76123 -10.52171 -10.18594 -9.96026 -9.83461 -9.25109 -8.82643 -8.56597 -8.38473 -8.27445 -6.72571 -5.71704 -3.17331 0.94377 1.09655 2.86650 3.32054 3.37754 3.40803 3.45356 3.46555 3.89366 4.10466 4.48747 4.52224 4.62321 4.79033 4.80254 4.96626 5.04423 5.07104 5.14105 5.25068 5.35334 5.41284 5.51290 5.53745 5.74294 5.74986 5.82229 5.87060 5.94990 6.02411 6.05796 6.15010 6.17337 6.26809 6.30616 6.37372 6.48103 6.52138 6.58699 6.67558 6.94498 7.05206 7.26866 7.34143 7.66977 7.81438 8.23059 8.40878 8.93468 9.24649 9.86917 10.35535 11.33491 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.002801 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.043142 B = 9994.937452 C =11211.380663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.092 3.908 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.121 4.121 7 C -0.071 4.071 8 C -0.063 4.063 9 C -0.134 4.134 10 C 0.520 3.480 11 O -0.555 6.555 12 N -0.699 5.699 13 C 0.117 3.883 14 H 0.084 0.916 15 C -0.159 4.159 16 C 0.143 3.857 17 N -0.597 5.597 18 C 0.162 3.838 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.070 3.930 28 F -0.130 7.130 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.394 0.606 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.041 0.959 45 H 0.032 0.968 46 H 0.042 0.958 47 H -0.006 1.006 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.365 -11.576 4.773 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.046 3.954 4 C -0.209 4.209 5 C -0.105 4.105 6 C -0.139 4.139 7 C -0.072 4.072 8 C -0.101 4.101 9 C -0.174 4.174 10 C 0.306 3.694 11 O -0.434 6.434 12 N -0.348 5.348 13 C 0.010 3.990 14 H 0.103 0.897 15 C -0.218 4.218 16 C 0.014 3.986 17 N -0.320 5.320 18 C 0.017 3.983 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.734 3.266 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.050 3.950 28 F -0.108 7.108 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.228 0.772 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.013 0.987 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.946 -11.571 5.496 19.685 hybrid contribution -0.180 0.925 -0.230 0.970 sum -15.126 -10.646 5.265 19.232 Atomic orbital electron populations 1.23093 0.78098 1.04133 1.01441 1.86134 1.21574 1.25940 1.88860 1.18979 0.90723 0.85573 1.00079 1.21097 1.00083 0.91583 1.08110 1.21009 0.94580 0.97167 0.97781 1.21017 0.93467 0.98075 1.01383 1.19925 0.97193 0.90823 0.99262 1.20284 0.87905 1.05133 0.96762 1.21589 0.93408 1.04287 0.98124 1.20305 0.89329 0.75772 0.84013 1.90637 1.70738 1.50343 1.31661 1.45783 1.07655 1.73016 1.08361 1.21826 0.79374 0.95352 1.02478 0.89750 1.22152 1.00641 0.97820 1.01185 1.21196 0.97057 0.88177 0.92130 1.43874 1.23625 1.00580 1.63872 1.20843 0.87784 0.95813 0.93851 1.19126 0.91437 0.87024 1.40849 0.91559 1.25010 0.95410 0.98684 1.00242 1.70027 1.02885 1.27895 1.54193 0.86350 0.78245 0.83926 0.78081 1.21172 1.21705 1.20981 1.16822 0.85732 0.82779 1.09654 1.91491 1.76408 1.48756 1.94194 0.92528 0.92453 0.88069 0.84746 0.84989 0.84376 0.89846 0.89141 0.89539 0.88328 0.77163 0.92221 0.92988 0.93268 0.92411 0.94087 0.95027 0.93906 0.98724 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.53 10.36 -19.62 -0.20 -3.74 16 3 C 0.09 1.10 6.69 -39.17 -0.26 0.84 16 4 C -0.19 -1.81 9.04 -39.45 -0.36 -2.17 16 5 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 6 C -0.12 -1.38 9.67 -39.56 -0.38 -1.76 16 7 C -0.07 -0.93 5.14 -104.58 -0.54 -1.46 16 8 C -0.06 -0.92 4.41 -27.88 -0.12 -1.05 16 9 C -0.13 -2.04 5.68 -27.88 -0.16 -2.20 16 10 C 0.52 9.92 7.79 -10.98 -0.09 9.84 16 11 O -0.55 -12.44 15.64 5.56 0.09 -12.35 16 12 N -0.70 -12.90 4.41 -53.81 -0.24 -13.14 16 13 C 0.12 2.24 2.88 -67.93 -0.20 2.05 16 14 H 0.08 1.95 7.58 -51.93 -0.39 1.56 16 15 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 16 C 0.14 2.79 5.33 -4.04 -0.02 2.77 16 17 N -0.60 -14.34 2.78 -181.12 -0.50 -14.85 16 18 C 0.16 3.72 7.61 59.85 0.46 4.18 16 19 C -0.25 -6.89 9.66 -15.06 -0.15 -7.04 16 20 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 21 C 0.00 0.14 5.13 -17.43 -0.09 0.05 16 22 N -0.91 -25.63 10.66 55.49 0.59 -25.03 16 23 Si 0.90 21.97 29.57 -169.99 -5.03 16.95 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.07 0.95 7.25 -39.30 -0.28 0.67 16 28 F -0.13 -1.95 16.41 2.25 0.04 -1.92 16 29 H 0.06 0.29 7.66 -51.92 -0.40 -0.11 16 30 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 36 H 0.09 1.39 8.01 -51.93 -0.42 0.97 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.39 6.69 7.17 -40.82 -0.29 6.40 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 44 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 45 H 0.03 0.77 6.90 -51.93 -0.36 0.41 16 46 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 47 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -32.93 397.96 -8.03 -40.95 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.53 Total: 4.62 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.24 Total: 2.51 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.15 Total: -53.02 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.12 Total: -16.09 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.93 -8.03 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669821501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.202 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds