Wall clock time and date at job start Tue Mar 31 2020 20:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35961 * 117.00288 * 2 1 4 4 C 1.38669 * 120.06054 * 359.97438 * 3 2 1 5 5 C 1.38172 * 119.96915 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.09344 * 359.74617 * 5 4 3 7 7 C 1.38251 * 120.12671 * 0.50820 * 6 5 4 8 8 C 1.50702 * 119.98539 * 179.76845 * 7 6 5 9 9 C 1.53005 * 109.46873 * 264.72512 * 8 7 6 10 10 C 1.50702 * 109.46873 * 180.02562 * 9 8 7 11 11 O 1.21276 * 119.99850 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99764 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99841 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47091 * 324.99787 * 13 12 10 15 15 C 1.52997 * 109.47201 * 84.99978 * 13 12 10 16 16 C 1.53004 * 109.46939 * 205.00159 * 13 12 10 17 17 N 1.46502 * 109.47008 * 54.99720 * 16 13 12 18 18 C 1.46497 * 119.99771 * 269.99811 * 17 16 13 19 19 C 1.36931 * 119.99878 * 90.00406 * 17 16 13 20 20 H 1.08003 * 120.00580 * 23.61260 * 19 17 16 21 21 C 1.38816 * 120.00162 * 203.61024 * 19 17 16 22 22 N 1.31620 * 119.99254 * 11.31565 * 21 19 17 23 23 Si 1.86800 * 120.00220 * 191.30764 * 21 19 17 24 24 H 1.48498 * 109.46957 * 60.00606 * 23 21 19 25 25 H 1.48501 * 109.46663 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47339 * 300.00250 * 23 21 19 27 27 C 1.38335 * 120.03030 * 359.49129 * 7 6 5 28 28 F 1.35101 * 120.04811 * 180.22992 * 27 7 6 29 29 H 1.09009 * 109.46874 * 300.00230 * 1 2 3 30 30 H 1.09004 * 109.47155 * 59.99390 * 1 2 3 31 31 H 1.08995 * 109.47808 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.01237 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.95668 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.93472 * 180.28004 * 6 5 4 35 35 H 1.09003 * 109.47026 * 144.72776 * 8 7 6 36 36 H 1.08994 * 109.47247 * 24.71947 * 8 7 6 37 37 H 1.09005 * 109.47144 * 299.99582 * 9 8 7 38 38 H 1.09001 * 109.47266 * 59.99799 * 9 8 7 39 39 H 0.96998 * 119.99984 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46616 * 180.02562 * 15 13 12 41 41 H 1.08999 * 109.47191 * 299.99877 * 15 13 12 42 42 H 1.08998 * 109.47254 * 59.99909 * 15 13 12 43 43 H 1.08996 * 109.47134 * 174.99627 * 16 13 12 44 44 H 1.08998 * 109.47247 * 294.99893 * 16 13 12 45 45 H 1.09002 * 109.47079 * 94.54002 * 18 17 16 46 46 H 1.09006 * 109.46798 * 214.53647 * 18 17 16 47 47 H 1.08993 * 109.47643 * 334.53289 * 18 17 16 48 48 H 0.97011 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3752 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3024 3.6776 0.0042 7 6 4.0580 2.5199 -0.0005 8 6 5.5627 2.6025 0.0000 9 6 6.0794 2.5040 -1.4368 10 6 7.5841 2.5860 -1.4362 11 8 8.1842 2.7113 -0.3898 12 7 8.2630 2.5200 -2.5987 13 6 9.7259 2.5991 -2.5981 14 1 10.0527 3.2789 -1.8112 15 6 10.3118 1.2083 -2.3464 16 6 10.2091 3.1184 -3.9538 17 7 9.5550 4.3957 -4.2487 18 6 8.2804 4.4165 -4.9706 19 6 10.1351 5.5702 -3.8497 20 1 11.1999 5.6144 -3.6744 21 6 9.3547 6.7041 -3.6706 22 7 8.0422 6.6053 -3.6646 23 14 10.1671 8.3700 -3.4378 24 1 10.9939 8.6883 -4.6296 25 1 9.1218 9.4109 -3.2676 26 1 11.0314 8.3350 -2.2308 27 6 3.4334 1.2856 0.0000 28 9 4.1713 0.1539 0.0001 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2138 2.3201 -0.0014 33 1 1.3342 4.5116 -0.0019 34 1 3.7916 4.6405 0.0084 35 1 5.9714 1.7821 0.5901 36 1 5.8743 3.5526 0.4337 37 1 5.7678 1.5538 -1.8707 38 1 5.6706 3.3243 -2.0269 39 1 7.7830 2.4201 -3.4356 40 1 11.4002 1.2674 -2.3455 41 1 9.9676 0.8384 -1.3806 42 1 9.9850 0.5286 -3.1333 43 1 11.2892 3.2617 -3.9240 44 1 9.9598 2.3949 -4.7299 45 1 7.4584 4.4498 -4.2556 46 1 8.2403 5.2972 -5.6117 47 1 8.1943 3.5181 -5.5817 48 1 7.4968 7.3977 -3.5390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669821501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:42 Heat of formation + Delta-G solvation = -99.880577 kcal Electronic energy + Delta-G solvation = -29678.331200 eV Core-core repulsion = 25454.888968 eV Total energy + Delta-G solvation = -4223.442232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.84283 -41.07999 -40.70333 -38.78831 -38.02304 -35.75129 -34.79028 -33.10421 -31.97066 -31.25429 -30.29394 -28.18993 -27.94913 -27.39078 -25.86973 -23.60086 -23.51678 -22.37062 -21.63397 -21.15008 -19.11607 -18.75070 -18.17915 -18.09379 -17.79090 -17.20037 -17.03436 -16.69509 -16.34308 -16.03769 -15.73200 -15.56205 -15.45900 -15.27771 -15.08299 -14.64328 -14.48249 -14.14537 -13.82457 -13.72196 -13.63699 -13.34590 -13.09184 -13.00191 -12.94047 -12.77547 -12.64975 -12.54912 -12.48161 -12.28965 -12.09783 -12.04417 -11.98220 -11.95589 -11.81077 -11.69094 -10.78666 -10.59968 -9.86831 -9.76886 -9.23451 -8.69063 -7.79387 -5.25605 0.06988 0.23923 1.45923 1.46920 1.52641 1.79639 2.16828 2.39488 2.52617 2.60172 3.24457 3.34105 3.55511 3.73880 3.82465 3.90385 4.02537 4.05173 4.18047 4.24207 4.31163 4.38776 4.40450 4.41695 4.46390 4.56327 4.62549 4.73584 4.77460 4.84331 4.86455 4.92131 4.98029 5.01544 5.05296 5.12572 5.21520 5.30381 5.38630 5.40072 5.44885 5.64578 5.67426 5.76392 5.82072 6.30273 6.37498 6.73495 7.20903 7.43285 7.92177 8.33506 9.22693 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.002801 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.043142 B = 9994.937452 C =11211.380663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.087 3.913 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.081 4.081 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.510 3.490 11 O -0.595 6.595 12 N -0.696 5.696 13 C 0.122 3.878 14 H 0.035 0.965 15 C -0.146 4.146 16 C 0.143 3.857 17 N -0.611 5.611 18 C 0.173 3.827 19 C -0.262 4.262 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.285 1.285 27 C 0.039 3.961 28 F -0.147 7.147 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.141 0.859 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.404 0.596 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.035 0.965 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 -12.193 3.898 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.041 3.959 4 C -0.198 4.198 5 C -0.095 4.095 6 C -0.150 4.150 7 C -0.082 4.082 8 C -0.093 4.093 9 C -0.161 4.161 10 C 0.298 3.702 11 O -0.477 6.477 12 N -0.345 5.345 13 C 0.015 3.985 14 H 0.054 0.946 15 C -0.205 4.205 16 C 0.016 3.984 17 N -0.334 5.334 18 C 0.029 3.971 19 C -0.393 4.393 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.573 5.573 23 Si 0.788 3.212 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.212 1.212 27 C 0.020 3.980 28 F -0.126 7.126 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.239 0.761 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.053 0.947 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.645 -12.219 4.592 21.153 hybrid contribution 0.308 1.057 0.035 1.102 sum -16.338 -11.162 4.626 20.320 Atomic orbital electron populations 1.23445 0.75587 1.05869 1.02861 1.86108 1.24227 1.25941 1.88738 1.19133 0.90258 0.86735 0.99765 1.21491 1.01668 0.90506 1.06137 1.21388 0.93818 0.98566 0.95691 1.21178 0.94612 0.97521 1.01718 1.19754 0.95962 0.91571 1.00906 1.20110 0.89589 1.03641 0.95998 1.21530 0.90487 1.05295 0.98813 1.20975 0.90853 0.74843 0.83515 1.90611 1.71848 1.52185 1.33054 1.45801 1.07582 1.72414 1.08680 1.21644 0.79923 0.96472 1.00505 0.94615 1.22018 1.01478 0.95674 1.01297 1.21355 0.96986 0.87002 0.93068 1.44074 1.23902 1.01354 1.64074 1.20647 0.86975 0.96234 0.93267 1.19399 0.91566 0.88468 1.39855 0.91841 1.25666 0.96054 1.01548 1.01049 1.70170 1.03640 1.28008 1.55437 0.85473 0.77262 0.80519 0.77920 1.20382 1.22018 1.21187 1.17108 0.86805 0.82344 1.11764 1.91432 1.76983 1.49588 1.94575 0.90971 0.90996 0.86423 0.81314 0.81728 0.84098 0.91359 0.90597 0.87598 0.88068 0.76083 0.90552 0.94377 0.90640 0.91972 0.90690 0.96694 0.96970 0.94710 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.19 10.36 -93.11 -0.96 -8.15 16 3 C 0.09 1.98 6.69 22.53 0.15 2.13 16 4 C -0.18 -2.90 9.04 22.36 0.20 -2.70 16 5 C -0.08 -1.26 10.04 22.26 0.22 -1.04 16 6 C -0.13 -2.90 9.67 22.28 0.22 -2.69 16 7 C -0.08 -2.15 5.14 -19.84 -0.10 -2.25 16 8 C -0.06 -1.71 4.41 29.85 0.13 -1.58 16 9 C -0.12 -3.79 5.68 29.85 0.17 -3.62 16 10 C 0.51 20.05 7.79 87.66 0.68 20.73 16 11 O -0.60 -27.98 15.64 -3.02 -0.05 -28.03 16 12 N -0.70 -25.60 4.41 -442.53 -1.95 -27.55 16 13 C 0.12 4.64 2.88 44.99 0.13 4.77 16 14 H 0.04 1.71 7.58 -2.39 -0.02 1.69 16 15 C -0.15 -4.35 9.48 71.98 0.68 -3.67 16 16 C 0.14 5.36 5.33 86.38 0.46 5.82 16 17 N -0.61 -29.04 2.78 -726.93 -2.02 -31.06 16 18 C 0.17 7.86 7.61 127.77 0.97 8.84 16 19 C -0.26 -14.27 9.66 84.04 0.81 -13.46 16 20 H 0.06 3.41 7.85 -2.91 -0.02 3.39 16 21 C -0.05 -2.65 5.13 84.86 0.44 -2.21 16 22 N -0.93 -53.31 10.66 21.65 0.23 -53.08 16 23 Si 0.96 45.70 29.57 68.60 2.03 47.73 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 C 0.04 1.09 7.25 22.45 0.16 1.25 16 28 F -0.15 -4.59 16.41 44.97 0.74 -3.85 16 29 H 0.07 0.50 7.66 -2.38 -0.02 0.49 16 30 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16 31 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.17 1.50 6.30 -2.91 -0.02 1.48 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.07 2.26 7.75 -2.39 -0.02 2.25 16 36 H 0.08 2.50 8.01 -2.39 -0.02 2.48 16 37 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 38 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.40 13.24 7.17 -92.71 -0.66 12.58 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 44 H 0.07 2.34 7.86 -2.39 -0.02 2.32 16 45 H 0.01 0.72 6.90 -2.39 -0.02 0.71 16 46 H 0.01 0.59 7.30 -2.38 -0.02 0.58 16 47 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 48 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -74.00 397.96 4.75 -69.24 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.30 Total: 23.15 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.44 Total: 11.60 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -3.74 Total: -111.69 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.01 Total: -36.18 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.74 Total: -3.85 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.00 4.75 -69.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669821501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.636 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds