Wall clock time and date at job start Tue Mar 31 2020 21:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00381 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 15 15 C 1.53006 * 109.47067 * 90.00004 * 14 12 10 16 16 C 1.53004 * 109.47092 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.46960 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99758 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99561 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00090 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99536 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47383 * 119.99664 * 22 20 18 25 25 H 1.48505 * 109.47218 * 239.99743 * 22 20 18 26 26 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 27 27 F 1.35100 * 120.04992 * 180.28191 * 26 7 6 28 28 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 29 29 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 30 30 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 35 35 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 36 36 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 37 37 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 38 38 H 1.08996 * 109.47507 * 89.99928 * 13 12 10 39 39 H 1.09003 * 109.47633 * 210.00203 * 13 12 10 40 40 H 1.09003 * 109.46949 * 329.99851 * 13 12 10 41 41 H 1.08999 * 109.47022 * 209.99763 * 14 12 10 42 42 H 1.08994 * 109.47278 * 329.99854 * 14 12 10 43 43 H 1.08999 * 109.47003 * 299.99770 * 15 14 12 44 44 H 1.09002 * 109.47010 * 60.00091 * 15 14 12 45 45 H 1.09003 * 109.47076 * 300.00360 * 16 15 14 46 46 H 1.08994 * 109.47118 * 59.99933 * 16 15 14 47 47 H 0.96998 * 120.00042 * 359.97438 * 17 16 15 48 48 H 0.96997 * 119.99715 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 7.5368 2.3709 -3.8634 14 6 9.7249 2.6008 -2.5994 15 6 10.3118 1.1933 -2.4741 16 6 11.8396 1.2760 -2.4745 17 7 12.4015 -0.0717 -2.3551 18 6 13.7594 -0.2478 -2.3334 19 1 14.4159 0.6068 -2.4046 20 6 14.2919 -1.5248 -2.2208 21 7 13.4916 -2.5662 -2.1345 22 14 16.1441 -1.7651 -2.1918 23 1 16.8163 -0.4456 -2.3033 24 1 16.5389 -2.4161 -0.9169 25 1 16.5496 -2.6248 -3.3328 26 6 3.4333 1.2856 0.0005 27 9 4.1713 0.1540 0.0068 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2136 2.3200 -0.0005 32 1 1.3340 4.5115 -0.0011 33 1 3.7914 4.6406 -0.0014 34 1 5.8742 3.5527 0.4339 35 1 5.9715 1.7822 0.5899 36 1 5.7671 1.5542 -1.8708 37 1 5.6698 3.3246 -2.0267 38 1 7.3007 3.3556 -4.2666 39 1 8.1566 1.8258 -4.5753 40 1 6.6132 1.8189 -3.6887 41 1 10.0643 3.0544 -3.5306 42 1 10.0557 3.2087 -1.7574 43 1 9.9724 0.7398 -1.5429 44 1 9.9809 0.5854 -3.3161 45 1 12.1786 1.7295 -3.4059 46 1 12.1708 1.8840 -1.6328 47 1 11.8118 -0.8391 -2.2908 48 1 13.8637 -3.4585 -2.0554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670118273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:15 Heat of formation + Delta-G solvation = -87.924316 kcal Electronic energy + Delta-G solvation = -28304.606434 eV Core-core repulsion = 24081.682664 eV Total energy + Delta-G solvation = -4222.923770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.00853 -40.47826 -39.92730 -38.15508 -36.18790 -34.76911 -34.11313 -32.22356 -30.72442 -30.32165 -29.37500 -27.79262 -26.90707 -25.87034 -24.26336 -22.97817 -22.59576 -21.43474 -20.83799 -19.07688 -18.50572 -17.47415 -17.36879 -17.01763 -16.98494 -16.54512 -16.10248 -15.78696 -15.34611 -15.18944 -14.92224 -14.59641 -14.47947 -14.10587 -14.03053 -13.56826 -13.25167 -13.15714 -12.98861 -12.95506 -12.76934 -12.58664 -12.50450 -12.28464 -11.98417 -11.85100 -11.81309 -11.49737 -11.41970 -11.22995 -10.87692 -10.81941 -10.67945 -10.33788 -10.00613 -9.77844 -9.65365 -9.13432 -8.81342 -8.62658 -8.62153 -6.85107 -5.70007 -2.98587 0.67303 0.83339 2.64491 2.67647 2.96258 3.16077 3.47928 3.52966 3.55750 3.87311 4.15541 4.31343 4.52445 4.57282 4.65338 4.65522 4.71071 4.76418 4.79110 4.88002 4.95808 5.00290 5.09661 5.21194 5.26446 5.35811 5.44230 5.49878 5.57471 5.59949 5.62818 5.69121 5.75895 5.85910 5.88760 5.98783 6.02538 6.14810 6.22387 6.36367 6.45504 6.58567 6.83909 6.93035 6.95462 7.37467 7.76287 8.19336 8.48995 9.59676 10.18861 10.53459 11.53205 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.001827 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.665081 B =15322.006124 C =16266.512891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.096 3.904 4 C -0.188 4.188 5 C -0.088 4.088 6 C -0.125 4.125 7 C -0.076 4.076 8 C -0.067 4.067 9 C -0.133 4.133 10 C 0.512 3.488 11 O -0.534 6.534 12 N -0.616 5.616 13 C 0.076 3.924 14 C 0.119 3.881 15 C -0.139 4.139 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.072 3.928 27 F -0.126 7.126 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.020 0.980 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.793 14.841 0.158 35.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.050 3.950 4 C -0.207 4.207 5 C -0.106 4.106 6 C -0.143 4.143 7 C -0.077 4.077 8 C -0.105 4.105 9 C -0.173 4.173 10 C 0.299 3.701 11 O -0.410 6.410 12 N -0.350 5.350 13 C -0.067 4.067 14 C -0.004 4.004 15 C -0.178 4.178 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.213 4.213 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.052 3.948 27 F -0.105 7.105 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -32.178 14.710 0.702 35.388 hybrid contribution 0.551 -0.681 -0.132 0.886 sum -31.627 14.029 0.570 34.604 Atomic orbital electron populations 1.23124 0.77860 1.04412 1.01431 1.86164 1.21758 1.25754 1.88605 1.19023 0.90780 0.85721 0.99496 1.21134 1.00254 0.91562 1.07773 1.20994 0.94533 0.97189 0.97909 1.20918 0.93473 0.97714 1.02239 1.19853 0.96898 0.90935 1.00010 1.20319 0.88317 1.05418 0.96400 1.21649 0.92540 1.04531 0.98530 1.20574 0.89795 0.76259 0.83430 1.90731 1.70559 1.48855 1.30901 1.47915 1.07491 1.72945 1.06616 1.21820 0.97466 1.01450 0.85969 1.21492 0.77744 0.98250 1.02914 1.22058 0.97254 0.96033 1.02460 1.20543 0.89743 0.89229 0.97660 1.42368 1.04457 1.02148 1.88791 1.19305 0.83176 0.92473 1.41914 0.91082 1.24767 0.97822 0.95550 1.03152 1.69683 1.33199 0.97842 1.57579 0.86090 0.85298 0.77513 0.77156 1.20544 1.21873 1.21912 1.16862 0.85849 0.82893 1.09157 1.91530 1.76282 1.48633 1.94050 0.92437 0.92412 0.87852 0.84608 0.84988 0.84659 0.89180 0.89319 0.88703 0.88732 0.92594 0.90565 0.91118 0.90568 0.89767 0.91563 0.92047 0.96433 0.96214 0.78316 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.97 10.36 -19.61 -0.20 -3.17 16 3 C 0.10 0.91 6.69 -39.18 -0.26 0.65 16 4 C -0.19 -1.26 9.04 -39.45 -0.36 -1.62 16 5 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 6 C -0.13 -0.87 9.68 -39.57 -0.38 -1.25 16 7 C -0.08 -0.70 5.14 -104.58 -0.54 -1.24 16 8 C -0.07 -0.68 4.41 -27.89 -0.12 -0.80 16 9 C -0.13 -1.28 4.23 -27.88 -0.12 -1.39 16 10 C 0.51 6.89 7.67 -10.98 -0.08 6.81 16 11 O -0.53 -9.39 15.56 5.56 0.09 -9.31 16 12 N -0.62 -7.60 2.87 -181.57 -0.52 -8.12 16 13 C 0.08 0.64 10.24 59.84 0.61 1.25 16 14 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 15 C -0.14 -2.47 5.65 -26.73 -0.15 -2.62 16 16 C 0.16 3.36 6.26 -4.04 -0.03 3.33 16 17 N -0.73 -19.90 5.60 -59.91 -0.34 -20.23 16 18 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 19 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 21 N -0.93 -29.49 13.06 55.49 0.72 -28.76 16 22 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 C 0.07 0.79 7.25 -39.29 -0.28 0.50 16 27 F -0.13 -1.68 16.41 2.25 0.04 -1.64 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 0.56 6.30 -52.48 -0.33 0.23 16 32 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 35 H 0.09 1.10 7.74 -51.92 -0.40 0.69 16 36 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 37 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 41 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.38 10.94 7.67 -40.82 -0.31 10.63 16 48 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -37.05 403.42 -8.09 -45.14 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.55 Total: 4.12 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.39 Total: -2.28 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.13 Total: -57.12 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.12 Total: -12.48 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.05 -8.09 -45.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670118273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.783 kcal (2) G-P(sol) polarization free energy of solvation -37.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds