Wall clock time and date at job start Tue Mar 31 2020 21:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00381 * 359.97438 * 12 10 9 14 14 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 15 15 C 1.53006 * 109.47067 * 90.00004 * 14 12 10 16 16 C 1.53004 * 109.47092 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.46960 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99758 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99561 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00090 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99536 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47383 * 119.99664 * 22 20 18 25 25 H 1.48505 * 109.47218 * 239.99743 * 22 20 18 26 26 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 27 27 F 1.35100 * 120.04992 * 180.28191 * 26 7 6 28 28 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 29 29 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 30 30 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 35 35 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 36 36 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 37 37 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 38 38 H 1.08996 * 109.47507 * 89.99928 * 13 12 10 39 39 H 1.09003 * 109.47633 * 210.00203 * 13 12 10 40 40 H 1.09003 * 109.46949 * 329.99851 * 13 12 10 41 41 H 1.08999 * 109.47022 * 209.99763 * 14 12 10 42 42 H 1.08994 * 109.47278 * 329.99854 * 14 12 10 43 43 H 1.08999 * 109.47003 * 299.99770 * 15 14 12 44 44 H 1.09002 * 109.47010 * 60.00091 * 15 14 12 45 45 H 1.09003 * 109.47076 * 300.00360 * 16 15 14 46 46 H 1.08994 * 109.47118 * 59.99933 * 16 15 14 47 47 H 0.96998 * 120.00042 * 359.97438 * 17 16 15 48 48 H 0.96997 * 119.99715 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 7.5368 2.3709 -3.8634 14 6 9.7249 2.6008 -2.5994 15 6 10.3118 1.1933 -2.4741 16 6 11.8396 1.2760 -2.4745 17 7 12.4015 -0.0717 -2.3551 18 6 13.7594 -0.2478 -2.3334 19 1 14.4159 0.6068 -2.4046 20 6 14.2919 -1.5248 -2.2208 21 7 13.4916 -2.5662 -2.1345 22 14 16.1441 -1.7651 -2.1918 23 1 16.8163 -0.4456 -2.3033 24 1 16.5389 -2.4161 -0.9169 25 1 16.5496 -2.6248 -3.3328 26 6 3.4333 1.2856 0.0005 27 9 4.1713 0.1540 0.0068 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2136 2.3200 -0.0005 32 1 1.3340 4.5115 -0.0011 33 1 3.7914 4.6406 -0.0014 34 1 5.8742 3.5527 0.4339 35 1 5.9715 1.7822 0.5899 36 1 5.7671 1.5542 -1.8708 37 1 5.6698 3.3246 -2.0267 38 1 7.3007 3.3556 -4.2666 39 1 8.1566 1.8258 -4.5753 40 1 6.6132 1.8189 -3.6887 41 1 10.0643 3.0544 -3.5306 42 1 10.0557 3.2087 -1.7574 43 1 9.9724 0.7398 -1.5429 44 1 9.9809 0.5854 -3.3161 45 1 12.1786 1.7295 -3.4059 46 1 12.1708 1.8840 -1.6328 47 1 11.8118 -0.8391 -2.2908 48 1 13.8637 -3.4585 -2.0554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670118273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:15 Heat of formation + Delta-G solvation = -112.111428 kcal Electronic energy + Delta-G solvation = -28305.655266 eV Core-core repulsion = 24081.682664 eV Total energy + Delta-G solvation = -4223.972602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.85258 -41.16905 -40.85288 -38.76530 -37.57516 -36.40597 -34.92729 -34.01749 -31.83692 -31.24602 -30.44620 -28.23700 -27.93239 -27.07746 -25.64602 -24.16436 -23.54398 -22.57740 -22.03096 -20.08665 -19.18724 -19.12879 -18.19000 -18.10869 -17.80053 -17.34120 -17.08618 -16.76924 -16.51261 -16.06847 -15.98143 -15.68903 -15.51337 -15.40307 -15.18805 -14.79818 -14.76200 -14.20674 -13.94826 -13.73921 -13.56843 -13.54953 -13.38892 -13.18389 -13.01098 -12.87898 -12.78625 -12.71307 -12.49858 -12.40813 -12.09081 -12.04746 -11.97477 -11.95376 -11.84019 -11.80690 -10.98498 -10.86854 -9.76318 -9.67765 -9.22433 -9.05689 -7.98674 -5.29212 0.08020 0.25860 1.44845 1.47244 1.57488 1.60361 2.02055 2.19953 2.53864 2.57131 3.26786 3.34680 3.40814 3.79161 3.83307 3.85721 3.96044 4.02291 4.04451 4.21467 4.23794 4.27000 4.33748 4.38130 4.38543 4.46284 4.51745 4.54654 4.62932 4.70366 4.71859 4.75491 4.84707 4.89160 4.97508 4.99015 5.07591 5.13858 5.26894 5.27761 5.32456 5.44104 5.45674 5.54779 5.68973 6.23348 6.30989 6.39502 7.16547 7.28410 8.03515 8.27097 9.25552 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.001827 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.665081 B =15322.006124 C =16266.512891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.082 3.918 4 C -0.183 4.183 5 C -0.076 4.076 6 C -0.123 4.123 7 C -0.081 4.081 8 C -0.063 4.063 9 C -0.120 4.120 10 C 0.503 3.497 11 O -0.586 6.586 12 N -0.616 5.616 13 C 0.069 3.931 14 C 0.127 3.873 15 C -0.122 4.122 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.289 1.289 26 C 0.031 3.969 27 F -0.154 7.154 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.014 0.986 47 H 0.371 0.629 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.664 17.533 -1.340 38.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.036 3.964 4 C -0.201 4.201 5 C -0.094 4.094 6 C -0.141 4.141 7 C -0.082 4.082 8 C -0.101 4.101 9 C -0.160 4.160 10 C 0.293 3.707 11 O -0.466 6.466 12 N -0.348 5.348 13 C -0.073 4.073 14 C 0.003 3.997 15 C -0.162 4.162 16 C 0.028 3.972 17 N -0.393 5.393 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.809 3.191 23 H -0.187 1.187 24 H -0.221 1.221 25 H -0.216 1.216 26 C 0.011 3.989 27 F -0.133 7.133 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.177 0.823 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.032 0.968 47 H 0.202 0.798 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -34.082 17.447 -0.838 38.297 hybrid contribution 1.013 -1.465 0.336 1.812 sum -33.069 15.982 -0.502 36.732 Atomic orbital electron populations 1.23422 0.75621 1.05728 1.02891 1.86120 1.24238 1.26459 1.88786 1.19246 0.90461 0.86730 0.99987 1.21513 1.01572 0.90782 1.06235 1.21447 0.94268 0.98183 0.95487 1.21229 0.94119 0.97597 1.01153 1.19798 0.96097 0.91318 1.01032 1.20200 0.89411 1.04070 0.96373 1.21632 0.89555 1.06015 0.98758 1.21296 0.91343 0.75157 0.82926 1.90705 1.71809 1.51301 1.32805 1.48028 1.06796 1.72032 1.07918 1.22125 0.97619 1.03529 0.84001 1.21305 0.79170 0.95385 1.03827 1.21874 0.94894 0.98492 1.00893 1.20712 0.91951 0.86594 0.97947 1.42635 1.03911 1.03838 1.88884 1.19749 0.84448 0.92882 1.40968 0.90283 1.25709 1.02850 0.95304 1.03465 1.69853 1.35314 0.98145 1.59055 0.84961 0.79410 0.77953 0.76745 1.18726 1.22067 1.21599 1.17343 0.86841 0.82711 1.11998 1.91446 1.77062 1.50138 1.94606 0.91005 0.90747 0.86837 0.81783 0.81315 0.82331 0.88835 0.92882 0.88445 0.85079 0.89660 0.90329 0.89658 0.87408 0.91382 0.94787 0.91581 0.94619 0.96772 0.79752 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.62 10.36 -93.08 -0.96 -7.59 16 3 C 0.08 1.53 6.69 22.53 0.15 1.68 16 4 C -0.18 -1.95 9.04 22.35 0.20 -1.75 16 5 C -0.08 -0.61 10.04 22.26 0.22 -0.39 16 6 C -0.12 -1.38 9.68 22.28 0.22 -1.17 16 7 C -0.08 -1.48 5.14 -19.84 -0.10 -1.58 16 8 C -0.06 -1.33 4.41 29.85 0.13 -1.20 16 9 C -0.12 -2.25 4.23 29.85 0.13 -2.12 16 10 C 0.50 13.67 7.67 87.66 0.67 14.34 16 11 O -0.59 -21.70 15.56 -3.03 -0.05 -21.74 16 12 N -0.62 -14.57 2.87 -846.76 -2.43 -17.01 16 13 C 0.07 0.97 10.24 127.77 1.31 2.28 16 14 C 0.13 3.51 5.41 86.38 0.47 3.97 16 15 C -0.12 -4.43 5.65 30.60 0.17 -4.25 16 16 C 0.15 6.69 6.26 86.38 0.54 7.24 16 17 N -0.75 -41.53 5.60 -343.44 -1.92 -43.46 16 18 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 21 N -0.97 -62.73 13.06 21.65 0.28 -62.45 16 22 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.03 0.70 7.25 22.46 0.16 0.86 16 27 F -0.15 -4.51 16.41 44.97 0.74 -3.77 16 28 H 0.07 0.35 7.66 -2.39 -0.02 0.34 16 29 H 0.07 0.33 7.66 -2.39 -0.02 0.32 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.16 0.73 6.30 -2.91 -0.02 0.71 16 32 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 33 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.09 1.85 8.01 -2.39 -0.02 1.83 16 35 H 0.05 1.48 7.74 -2.38 -0.02 1.46 16 36 H 0.10 1.80 7.40 -2.39 -0.02 1.79 16 37 H 0.13 1.48 8.11 -2.39 -0.02 1.46 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 40 H 0.08 0.97 6.44 -2.39 -0.02 0.96 16 41 H 0.11 2.32 8.07 -2.39 -0.02 2.30 16 42 H 0.07 2.13 7.42 -2.39 -0.02 2.11 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.37 21.95 7.67 -92.71 -0.71 21.24 16 48 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -84.94 403.42 4.62 -80.31 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.25 Total: 24.87 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.69 Total: 0.76 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -4.07 Total: -122.91 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.01 Total: -29.33 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.74 Total: -3.77 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -84.94 4.62 -80.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670118273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.797 kcal (2) G-P(sol) polarization free energy of solvation -84.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds