Wall clock time and date at job start Tue Mar 31 2020 21:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 114.00058 * 2 1 4 4 H 1.09001 * 109.47070 * 30.00181 * 3 2 1 5 5 C 1.50696 * 109.46892 * 270.00534 * 3 2 1 6 6 O 1.21290 * 120.00228 * 336.22785 * 5 3 2 7 7 N 1.34776 * 119.99865 * 156.23580 * 5 3 2 8 8 C 1.46500 * 120.00114 * 354.46038 * 7 5 3 9 9 C 1.46510 * 119.99866 * 174.19071 * 7 5 3 10 10 C 1.52998 * 109.47203 * 89.99652 * 9 7 5 11 11 C 1.53002 * 109.47061 * 179.97438 * 10 9 7 12 12 N 1.46491 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00371 * 90.00255 * 12 11 10 14 14 C 1.36943 * 119.99799 * 269.99444 * 12 11 10 15 15 H 1.07997 * 119.99802 * 24.88751 * 14 12 11 16 16 C 1.38811 * 120.00084 * 204.88230 * 14 12 11 17 17 N 1.31618 * 120.00332 * 5.66067 * 16 14 12 18 18 Si 1.86800 * 119.99942 * 185.66260 * 16 14 12 19 19 H 1.48500 * 109.47419 * 90.00201 * 18 16 14 20 20 H 1.48498 * 109.47096 * 210.00078 * 18 16 14 21 21 H 1.48502 * 109.47227 * 329.99979 * 18 16 14 22 22 C 1.50695 * 109.46885 * 150.00136 * 3 2 1 23 23 C 1.38247 * 119.97498 * 44.62716 * 22 3 2 24 24 C 1.38194 * 120.02359 * 179.76171 * 23 22 3 25 25 C 1.38461 * 119.97703 * 0.51376 * 24 23 22 26 26 F 1.35097 * 120.03119 * 179.76475 * 25 24 23 27 27 C 1.38461 * 119.94713 * 359.74336 * 25 24 23 28 28 C 1.38203 * 119.97144 * 359.97438 * 27 25 24 29 29 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46465 * 299.99958 * 1 2 3 31 31 H 1.08999 * 109.47335 * 59.99580 * 1 2 3 32 32 H 1.08995 * 109.47046 * 274.91134 * 8 7 5 33 33 H 1.09002 * 109.46956 * 34.91223 * 8 7 5 34 34 H 1.08998 * 109.46830 * 154.90586 * 8 7 5 35 35 H 1.08998 * 109.46693 * 210.00065 * 9 7 5 36 36 H 1.09004 * 109.46663 * 329.99283 * 9 7 5 37 37 H 1.08997 * 109.46955 * 300.00159 * 10 9 7 38 38 H 1.09003 * 109.46945 * 59.99871 * 10 9 7 39 39 H 1.09007 * 109.46656 * 300.00139 * 11 10 9 40 40 H 1.08999 * 109.46816 * 60.00169 * 11 10 9 41 41 H 1.08995 * 109.47848 * 95.01547 * 13 12 11 42 42 H 1.09000 * 109.47477 * 215.01715 * 13 12 11 43 43 H 1.09007 * 109.46950 * 335.01326 * 13 12 11 44 44 H 0.96996 * 120.00554 * 180.02562 * 17 16 14 45 45 H 1.07999 * 119.98498 * 0.02562 * 23 22 3 46 46 H 1.08001 * 120.01275 * 180.25166 * 24 23 22 47 47 H 1.07998 * 120.01581 * 179.97438 * 27 25 24 48 48 H 1.07998 * 119.98180 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.3148 0.9489 -2.3130 7 7 2.2858 3.0810 -1.7000 8 6 2.0442 4.0678 -0.6445 9 6 2.6107 3.5253 -3.0578 10 6 1.3206 3.6850 -3.8646 11 6 1.6599 4.1496 -5.2823 12 7 0.4246 4.3031 -6.0546 13 6 -0.2779 5.5886 -6.0650 14 6 -0.0735 3.2449 -6.7670 15 1 0.1682 2.2343 -6.4727 16 6 -0.8891 3.4712 -7.8672 17 7 -1.0937 4.6996 -8.2932 18 14 -1.6964 2.0323 -8.7431 19 1 -3.0209 1.7593 -8.1297 20 1 -1.8750 2.3643 -10.1794 21 1 -0.8349 0.8293 -8.6166 22 6 3.3387 1.2639 0.7104 23 6 4.2297 0.2395 0.4494 24 6 5.4502 0.2031 1.0966 25 6 5.7761 1.1870 2.0146 26 9 6.9670 1.1498 2.6514 27 6 4.8808 2.2095 2.2791 28 6 3.6632 2.2471 1.6263 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.9735 4.2522 -0.5577 33 1 2.4254 3.6870 0.3030 34 1 2.5542 4.9984 -0.8936 35 1 3.1316 4.4817 -3.0122 36 1 3.2508 2.7856 -3.5387 37 1 0.7998 2.7286 -3.9101 38 1 0.6805 4.4247 -3.3836 39 1 2.1805 5.1062 -5.2363 40 1 2.3001 3.4102 -5.7635 41 1 0.0311 6.1646 -6.9372 42 1 -1.3532 5.4148 -6.1068 43 1 -0.0345 6.1430 -5.1586 44 1 -1.6639 4.8578 -9.0618 45 1 3.9736 -0.5301 -0.2637 46 1 6.1478 -0.5950 0.8896 47 1 5.1337 2.9774 2.9952 48 1 2.9649 3.0448 1.8321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673491110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:03 Heat of formation + Delta-G solvation = -64.884462 kcal Electronic energy + Delta-G solvation = -29543.705787 eV Core-core repulsion = 25321.781100 eV Total energy + Delta-G solvation = -4221.924687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.24805 -40.74648 -39.00171 -37.64265 -36.17521 -35.32979 -32.78825 -31.85838 -31.56256 -30.14661 -27.80816 -27.06979 -26.52040 -25.79931 -24.74594 -23.43584 -22.61500 -21.74389 -20.19115 -19.44285 -18.19814 -17.64546 -17.10598 -16.94565 -16.64215 -16.19811 -15.92925 -15.60014 -15.20362 -14.92805 -14.76109 -14.60424 -14.13017 -13.97967 -13.80702 -13.63456 -13.33532 -13.22946 -13.06225 -12.82590 -12.66797 -12.59464 -12.43328 -11.90862 -11.72338 -11.63777 -11.31695 -11.17844 -10.91834 -10.81485 -10.74341 -10.65123 -10.38085 -10.13186 -9.82937 -9.69577 -9.58404 -9.49218 -8.90292 -8.69135 -8.44892 -6.64512 -5.65588 -3.14272 0.63387 0.84056 2.50851 2.78675 3.08172 3.42438 3.48251 3.51188 3.55746 3.85145 4.25623 4.30848 4.35968 4.50822 4.55565 4.62640 4.80312 4.90433 5.01760 5.09109 5.16375 5.22704 5.32219 5.40396 5.48195 5.49247 5.51167 5.52145 5.56223 5.70414 5.79578 5.85432 6.02437 6.05271 6.09050 6.17101 6.45132 6.49226 6.57614 6.72525 6.80084 6.87821 7.07275 7.32839 7.46777 7.80711 7.88584 8.13419 8.48734 9.32515 9.94555 10.43818 11.39109 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002387 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.356495 B =11725.864188 C =12313.169013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.118 3.882 4 H 0.090 0.910 5 C 0.492 3.508 6 O -0.509 6.509 7 N -0.610 5.610 8 C 0.068 3.932 9 C 0.117 3.883 10 C -0.150 4.150 11 C 0.156 3.844 12 N -0.605 5.605 13 C 0.166 3.834 14 C -0.249 4.249 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.913 5.913 18 Si 0.905 3.095 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.097 4.097 23 C -0.051 4.051 24 C -0.154 4.154 25 C 0.104 3.896 26 F -0.139 7.139 27 C -0.155 4.155 28 C -0.079 4.079 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.042 0.958 43 H -0.008 1.008 44 H 0.251 0.749 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.749 -2.796 25.697 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.056 3.944 4 H 0.108 0.892 5 C 0.278 3.722 6 O -0.383 6.383 7 N -0.346 5.346 8 C -0.075 4.075 9 C -0.005 4.005 10 C -0.192 4.192 11 C 0.028 3.972 12 N -0.328 5.328 13 C 0.022 3.978 14 C -0.379 4.379 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.559 5.559 18 Si 0.735 3.265 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.097 4.097 23 C -0.069 4.069 24 C -0.173 4.173 25 C 0.085 3.915 26 F -0.118 7.118 27 C -0.173 4.173 28 C -0.097 4.097 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.011 0.989 44 H 0.061 0.939 45 H 0.160 0.840 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.843 -3.351 25.064 27.135 hybrid contribution -0.632 -0.366 -0.370 0.818 sum 9.211 -3.717 24.694 26.617 Atomic orbital electron populations 1.22938 0.79969 1.03693 1.00366 1.88005 1.20436 1.24177 1.94498 1.20761 0.93467 0.87435 0.92718 0.89193 1.20998 0.77723 0.82526 0.90986 1.90755 1.47610 1.52495 1.47444 1.47953 1.70105 1.05359 1.11164 1.22016 1.01658 0.93117 0.90703 1.21648 0.98532 0.99808 0.80498 1.22603 0.96111 1.02115 0.98325 1.20626 0.89181 0.97824 0.89604 1.43877 1.23537 1.10438 1.54932 1.20787 0.96582 0.85863 0.94596 1.19225 1.26275 0.86951 1.05474 0.91496 1.25104 1.01361 0.96391 0.96885 1.70051 1.41104 1.18172 1.26561 0.86237 0.79396 0.81977 0.78878 1.21577 1.21681 1.20402 1.19397 0.94909 0.96998 0.98429 1.20989 0.91352 0.97315 0.97271 1.21217 0.98564 0.99629 0.97877 1.17793 0.82073 0.96953 0.94656 1.91511 1.43697 1.96304 1.80258 1.21060 0.94290 0.99182 1.02805 1.20864 0.96334 0.97898 0.94591 0.88761 0.93673 0.93324 0.92324 0.91476 0.90288 0.90827 0.90180 0.91794 0.92954 0.94776 0.93463 0.95269 0.93914 0.98924 0.93853 0.83951 0.84323 0.84282 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.35 -4.33 9.49 -53.91 -0.51 -4.85 16 3 C 0.12 1.27 2.00 -29.04 -0.06 1.22 16 4 H 0.09 0.72 6.29 -51.93 -0.33 0.39 16 5 C 0.49 7.01 6.77 -10.99 -0.07 6.94 16 6 O -0.51 -9.59 16.30 -13.13 -0.21 -9.81 16 7 N -0.61 -7.65 2.87 -181.57 -0.52 -8.18 16 8 C 0.07 0.55 9.89 59.85 0.59 1.14 16 9 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 10 C -0.15 -2.71 5.86 -26.73 -0.16 -2.87 16 11 C 0.16 3.28 5.64 -4.05 -0.02 3.26 16 12 N -0.61 -15.82 2.92 -181.12 -0.53 -16.34 16 13 C 0.17 4.21 8.95 59.84 0.54 4.75 16 14 C -0.25 -7.16 9.66 -15.06 -0.15 -7.31 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C 0.00 0.00 5.24 -17.43 -0.09 -0.09 16 17 N -0.91 -27.34 10.45 55.49 0.58 -26.76 16 18 Si 0.90 22.68 29.56 -169.99 -5.02 17.66 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.10 -0.94 4.86 -104.62 -0.51 -1.45 16 23 C -0.05 -0.53 9.31 -39.59 -0.37 -0.90 16 24 C -0.15 -1.41 10.03 -39.52 -0.40 -1.80 16 25 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 26 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 27 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 28 C -0.08 -0.57 8.59 -39.59 -0.34 -0.91 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.39 3.54 -51.93 -0.18 0.21 16 34 H 0.08 0.54 7.83 -51.93 -0.41 0.13 16 35 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.03 0.79 7.35 -51.93 -0.38 0.41 16 42 H 0.04 1.16 7.26 -51.93 -0.38 0.78 16 43 H -0.01 -0.17 8.03 -51.92 -0.42 -0.59 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.14 1.60 7.91 -52.49 -0.42 1.18 16 46 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.14 0.59 6.39 -52.49 -0.34 0.26 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -35.21 397.67 -8.24 -43.45 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -7.40 Total: -3.96 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.65 Total: 4.10 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.47 Total: -51.28 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.73 Total: -14.65 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.21 -8.24 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.437 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds