Wall clock time and date at job start Tue Mar 31 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 114.00058 * 2 1 4 4 H 1.09001 * 109.47070 * 30.00181 * 3 2 1 5 5 C 1.50696 * 109.46892 * 270.00534 * 3 2 1 6 6 O 1.21290 * 120.00228 * 336.22785 * 5 3 2 7 7 N 1.34776 * 119.99865 * 156.23580 * 5 3 2 8 8 C 1.46500 * 120.00114 * 354.46038 * 7 5 3 9 9 C 1.46510 * 119.99866 * 174.19071 * 7 5 3 10 10 C 1.52998 * 109.47203 * 89.99652 * 9 7 5 11 11 C 1.53002 * 109.47061 * 179.97438 * 10 9 7 12 12 N 1.46491 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00371 * 90.00255 * 12 11 10 14 14 C 1.36943 * 119.99799 * 269.99444 * 12 11 10 15 15 H 1.07997 * 119.99802 * 24.88751 * 14 12 11 16 16 C 1.38811 * 120.00084 * 204.88230 * 14 12 11 17 17 N 1.31618 * 120.00332 * 5.66067 * 16 14 12 18 18 Si 1.86800 * 119.99942 * 185.66260 * 16 14 12 19 19 H 1.48500 * 109.47419 * 90.00201 * 18 16 14 20 20 H 1.48498 * 109.47096 * 210.00078 * 18 16 14 21 21 H 1.48502 * 109.47227 * 329.99979 * 18 16 14 22 22 C 1.50695 * 109.46885 * 150.00136 * 3 2 1 23 23 C 1.38247 * 119.97498 * 44.62716 * 22 3 2 24 24 C 1.38194 * 120.02359 * 179.76171 * 23 22 3 25 25 C 1.38461 * 119.97703 * 0.51376 * 24 23 22 26 26 F 1.35097 * 120.03119 * 179.76475 * 25 24 23 27 27 C 1.38461 * 119.94713 * 359.74336 * 25 24 23 28 28 C 1.38203 * 119.97144 * 359.97438 * 27 25 24 29 29 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46465 * 299.99958 * 1 2 3 31 31 H 1.08999 * 109.47335 * 59.99580 * 1 2 3 32 32 H 1.08995 * 109.47046 * 274.91134 * 8 7 5 33 33 H 1.09002 * 109.46956 * 34.91223 * 8 7 5 34 34 H 1.08998 * 109.46830 * 154.90586 * 8 7 5 35 35 H 1.08998 * 109.46693 * 210.00065 * 9 7 5 36 36 H 1.09004 * 109.46663 * 329.99283 * 9 7 5 37 37 H 1.08997 * 109.46955 * 300.00159 * 10 9 7 38 38 H 1.09003 * 109.46945 * 59.99871 * 10 9 7 39 39 H 1.09007 * 109.46656 * 300.00139 * 11 10 9 40 40 H 1.08999 * 109.46816 * 60.00169 * 11 10 9 41 41 H 1.08995 * 109.47848 * 95.01547 * 13 12 11 42 42 H 1.09000 * 109.47477 * 215.01715 * 13 12 11 43 43 H 1.09007 * 109.46950 * 335.01326 * 13 12 11 44 44 H 0.96996 * 120.00554 * 180.02562 * 17 16 14 45 45 H 1.07999 * 119.98498 * 0.02562 * 23 22 3 46 46 H 1.08001 * 120.01275 * 180.25166 * 24 23 22 47 47 H 1.07998 * 120.01581 * 179.97438 * 27 25 24 48 48 H 1.07998 * 119.98180 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.3148 0.9489 -2.3130 7 7 2.2858 3.0810 -1.7000 8 6 2.0442 4.0678 -0.6445 9 6 2.6107 3.5253 -3.0578 10 6 1.3206 3.6850 -3.8646 11 6 1.6599 4.1496 -5.2823 12 7 0.4246 4.3031 -6.0546 13 6 -0.2779 5.5886 -6.0650 14 6 -0.0735 3.2449 -6.7670 15 1 0.1682 2.2343 -6.4727 16 6 -0.8891 3.4712 -7.8672 17 7 -1.0937 4.6996 -8.2932 18 14 -1.6964 2.0323 -8.7431 19 1 -3.0209 1.7593 -8.1297 20 1 -1.8750 2.3643 -10.1794 21 1 -0.8349 0.8293 -8.6166 22 6 3.3387 1.2639 0.7104 23 6 4.2297 0.2395 0.4494 24 6 5.4502 0.2031 1.0966 25 6 5.7761 1.1870 2.0146 26 9 6.9670 1.1498 2.6514 27 6 4.8808 2.2095 2.2791 28 6 3.6632 2.2471 1.6263 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.9735 4.2522 -0.5577 33 1 2.4254 3.6870 0.3030 34 1 2.5542 4.9984 -0.8936 35 1 3.1316 4.4817 -3.0122 36 1 3.2508 2.7856 -3.5387 37 1 0.7998 2.7286 -3.9101 38 1 0.6805 4.4247 -3.3836 39 1 2.1805 5.1062 -5.2363 40 1 2.3001 3.4102 -5.7635 41 1 0.0311 6.1646 -6.9372 42 1 -1.3532 5.4148 -6.1068 43 1 -0.0345 6.1430 -5.1586 44 1 -1.6639 4.8578 -9.0618 45 1 3.9736 -0.5301 -0.2637 46 1 6.1478 -0.5950 0.8896 47 1 5.1337 2.9774 2.9952 48 1 2.9649 3.0448 1.8321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673491110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:02 Heat of formation + Delta-G solvation = -85.799114 kcal Electronic energy + Delta-G solvation = -29544.612714 eV Core-core repulsion = 25321.781100 eV Total energy + Delta-G solvation = -4222.831614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.94289 -41.65630 -39.82249 -38.54463 -37.82353 -36.70926 -34.26320 -33.05279 -32.20037 -31.79410 -28.64713 -28.14028 -27.87318 -27.41867 -26.03499 -24.07454 -23.95404 -22.78118 -21.95911 -20.43246 -18.92928 -18.76378 -18.45166 -18.01109 -17.70531 -17.21269 -16.84712 -16.62148 -16.43690 -16.04901 -15.96809 -15.59836 -15.52361 -15.12462 -14.71979 -14.60386 -14.57661 -14.44532 -14.29190 -13.96696 -13.87990 -13.37743 -13.35438 -13.22691 -12.90924 -12.79764 -12.64337 -12.57331 -12.50490 -12.38174 -12.21775 -12.12725 -11.93516 -11.90002 -11.68808 -11.42054 -10.68895 -10.51188 -10.12602 -9.71792 -9.65570 -8.74523 -7.85393 -5.36591 -0.04780 0.21336 1.41617 1.42172 1.47510 1.52293 1.86362 2.39119 2.47307 2.79536 3.20643 3.27347 3.47061 3.54158 3.68131 3.71581 3.87801 3.95802 4.06490 4.18884 4.29890 4.37380 4.38924 4.41165 4.46275 4.53656 4.58540 4.68866 4.73439 4.78967 4.84812 4.87373 4.89309 4.91549 4.94783 5.09851 5.17383 5.26334 5.28046 5.35691 5.48845 5.55634 5.60611 5.73423 5.80840 5.90835 6.32379 6.36524 7.10384 7.14927 7.87091 8.28612 9.16759 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002387 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.356495 B =11725.864188 C =12313.169013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.378 6.378 3 C 0.124 3.876 4 H 0.127 0.873 5 C 0.484 3.516 6 O -0.571 6.571 7 N -0.609 5.609 8 C 0.057 3.943 9 C 0.125 3.875 10 C -0.128 4.128 11 C 0.153 3.847 12 N -0.625 5.625 13 C 0.180 3.820 14 C -0.262 4.262 15 H 0.056 0.944 16 C -0.051 4.051 17 N -0.938 5.938 18 Si 0.967 3.033 19 H -0.284 1.284 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.108 4.108 23 C -0.071 4.071 24 C -0.161 4.161 25 C 0.092 3.908 26 F -0.145 7.145 27 C -0.145 4.145 28 C -0.066 4.066 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.005 0.995 42 H 0.014 0.986 43 H 0.033 0.967 44 H 0.249 0.751 45 H 0.119 0.881 46 H 0.144 0.856 47 H 0.169 0.831 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -1.012 28.653 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.296 6.296 3 C 0.062 3.938 4 H 0.144 0.856 5 C 0.271 3.729 6 O -0.450 6.450 7 N -0.342 5.342 8 C -0.084 4.084 9 C 0.001 3.999 10 C -0.169 4.169 11 C 0.026 3.974 12 N -0.348 5.348 13 C 0.036 3.964 14 C -0.392 4.392 15 H 0.074 0.926 16 C -0.246 4.246 17 N -0.585 5.585 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.108 4.108 23 C -0.090 4.090 24 C -0.180 4.180 25 C 0.073 3.927 26 F -0.124 7.124 27 C -0.164 4.164 28 C -0.084 4.084 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.137 0.863 46 H 0.162 0.838 47 H 0.187 0.813 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 10.062 -1.541 28.080 29.868 hybrid contribution -0.644 -0.902 -1.231 1.656 sum 9.418 -2.443 26.849 28.558 Atomic orbital electron populations 1.23082 0.78977 1.04512 1.00793 1.87990 1.21709 1.25470 1.94390 1.20861 0.94786 0.87526 0.90585 0.85587 1.21802 0.76427 0.82595 0.92070 1.90722 1.50478 1.54258 1.49523 1.48050 1.68995 1.05840 1.11321 1.22393 1.02902 0.92824 0.90235 1.21447 0.96157 1.00971 0.81278 1.22267 0.97754 0.99740 0.97165 1.20804 0.87389 0.98917 0.90274 1.44151 1.25208 1.09998 1.55488 1.20543 0.94768 0.85671 0.95455 1.19397 1.26512 0.87445 1.05880 0.92594 1.25827 1.02219 0.98865 0.97719 1.70204 1.41716 1.19700 1.26871 0.85274 0.78452 0.79138 0.77649 1.21032 1.21350 1.20036 1.19473 0.94224 0.97762 0.99388 1.20900 0.92443 0.97829 0.97809 1.21268 0.98334 1.00284 0.98134 1.18009 0.82348 0.97587 0.94788 1.91497 1.44144 1.96384 1.80332 1.21415 0.93574 0.98826 1.02543 1.21210 0.96728 0.97605 0.92843 0.88034 0.90397 0.95498 0.91273 0.88936 0.88201 0.87043 0.92533 0.96079 0.91991 0.91924 0.94994 0.97670 0.96723 0.94850 0.94129 0.86268 0.83829 0.81347 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.81 113.37 1.23 1.64 16 2 O -0.38 -9.22 9.49 -131.12 -1.24 -10.47 16 3 C 0.12 2.48 2.00 29.10 0.06 2.54 16 4 H 0.13 1.53 6.29 -2.39 -0.02 1.51 16 5 C 0.48 13.67 6.77 87.66 0.59 14.26 16 6 O -0.57 -22.77 16.30 14.80 0.24 -22.53 16 7 N -0.61 -14.06 2.87 -846.74 -2.43 -16.49 16 8 C 0.06 0.66 9.89 127.77 1.26 1.92 16 9 C 0.12 3.41 5.41 86.38 0.47 3.88 16 10 C -0.13 -4.57 5.86 30.59 0.18 -4.39 16 11 C 0.15 6.37 5.64 86.38 0.49 6.86 16 12 N -0.62 -32.91 2.92 -726.95 -2.13 -35.03 16 13 C 0.18 9.10 8.95 127.77 1.14 10.25 16 14 C -0.26 -15.38 9.66 84.03 0.81 -14.57 16 15 H 0.06 3.33 7.83 -2.91 -0.02 3.31 16 16 C -0.05 -3.03 5.24 84.86 0.44 -2.58 16 17 N -0.94 -57.07 10.45 21.65 0.23 -56.84 16 18 Si 0.97 47.45 29.56 68.60 2.03 49.48 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 22 C -0.11 -1.89 4.86 -19.86 -0.10 -1.99 16 23 C -0.07 -1.50 9.31 22.26 0.21 -1.30 16 24 C -0.16 -2.93 10.03 22.31 0.22 -2.71 16 25 C 0.09 1.49 7.30 22.38 0.16 1.66 16 26 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 27 C -0.15 -1.60 10.03 22.31 0.22 -1.37 16 28 C -0.07 -0.68 8.59 22.26 0.19 -0.49 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 0.92 8.09 -2.38 -0.02 0.90 16 31 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.57 3.54 -2.39 -0.01 0.56 16 34 H 0.10 0.80 7.83 -2.39 -0.02 0.78 16 35 H 0.11 2.23 7.85 -2.39 -0.02 2.21 16 36 H 0.06 1.83 7.51 -2.38 -0.02 1.81 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.26 8.07 -2.38 -0.02 2.24 16 40 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 41 H 0.00 0.27 7.35 -2.39 -0.02 0.26 16 42 H 0.01 0.78 7.26 -2.39 -0.02 0.76 16 43 H 0.03 1.38 8.03 -2.38 -0.02 1.36 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.12 2.98 7.91 -2.91 -0.02 2.96 16 46 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 48 H 0.18 0.37 6.39 -2.91 -0.02 0.35 16 Total: -1.00 -81.40 397.67 6.01 -75.39 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 0.95 Total: 4.69 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.59 Total: 13.61 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.33 Total: -108.37 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.00 Total: -33.00 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -81.40 6.01 -75.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.406 kcal (2) G-P(sol) polarization free energy of solvation -81.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds