Wall clock time and date at job start Tue Mar 31 2020 21:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99943 * 2 1 4 4 H 1.09005 * 109.47040 * 29.99663 * 3 2 1 5 5 C 1.50692 * 109.47523 * 149.99526 * 3 2 1 6 6 O 1.21277 * 119.99957 * 19.14785 * 5 3 2 7 7 N 1.34773 * 120.00207 * 199.14697 * 5 3 2 8 8 C 1.46506 * 120.00122 * 5.35857 * 7 5 3 9 9 C 1.46509 * 120.00240 * 185.35298 * 7 5 3 10 10 C 1.53000 * 109.47009 * 90.00203 * 9 7 5 11 11 C 1.52999 * 109.46978 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46785 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99662 * 90.00465 * 12 11 10 14 14 C 1.36939 * 120.00358 * 269.99773 * 12 11 10 15 15 H 1.07999 * 119.99297 * 21.40387 * 14 12 11 16 16 C 1.38812 * 120.00184 * 201.39488 * 14 12 11 17 17 N 1.31619 * 119.99760 * 11.01229 * 16 14 12 18 18 Si 1.86797 * 120.00116 * 191.00832 * 16 14 12 19 19 H 1.48501 * 109.46905 * 60.00005 * 18 16 14 20 20 H 1.48497 * 109.47191 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47035 * 300.00318 * 18 16 14 22 22 C 1.50707 * 109.47111 * 270.00061 * 3 2 1 23 23 C 1.38244 * 119.96758 * 312.82111 * 22 3 2 24 24 C 1.38200 * 120.02235 * 179.72901 * 23 22 3 25 25 C 1.38462 * 119.97104 * 0.52130 * 24 23 22 26 26 F 1.35105 * 120.02258 * 179.72548 * 25 24 23 27 27 C 1.38458 * 119.95278 * 359.75374 * 25 24 23 28 28 C 1.38200 * 119.97039 * 359.97438 * 27 25 24 29 29 H 1.08997 * 109.47143 * 60.00838 * 1 2 3 30 30 H 1.09002 * 109.46688 * 180.02562 * 1 2 3 31 31 H 1.08988 * 109.47450 * 300.00043 * 1 2 3 32 32 H 1.09001 * 109.47082 * 87.03052 * 8 7 5 33 33 H 1.09003 * 109.46925 * 207.02744 * 8 7 5 34 34 H 1.08994 * 109.46797 * 327.02725 * 8 7 5 35 35 H 1.08993 * 109.47112 * 210.00309 * 9 7 5 36 36 H 1.09000 * 109.46555 * 330.00391 * 9 7 5 37 37 H 1.09004 * 109.46919 * 300.00314 * 10 9 7 38 38 H 1.08998 * 109.47209 * 59.99880 * 10 9 7 39 39 H 1.08993 * 109.47057 * 300.00054 * 11 10 9 40 40 H 1.09006 * 109.47088 * 60.00126 * 11 10 9 41 41 H 1.08994 * 109.47273 * 93.84659 * 13 12 11 42 42 H 1.09006 * 109.46703 * 213.84266 * 13 12 11 43 43 H 1.08998 * 109.47330 * 333.84111 * 13 12 11 44 44 H 0.97006 * 119.99667 * 179.97438 * 17 16 14 45 45 H 1.08007 * 119.99024 * 359.97438 * 23 22 3 46 46 H 1.08001 * 120.01661 * 180.29922 * 24 23 22 47 47 H 1.07994 * 120.01661 * 179.97438 * 27 25 24 48 48 H 1.07996 * 119.98502 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3385 1.2640 0.7105 6 8 3.9116 0.2062 0.8634 7 7 3.8896 2.4025 1.1759 8 6 3.1459 3.6622 1.0964 9 6 5.2325 2.3803 1.7614 10 6 6.2709 2.6277 0.6653 11 6 7.6732 2.6039 1.2766 12 7 8.6675 2.8401 0.2270 13 6 9.0930 4.2070 -0.0847 14 6 9.1993 1.7834 -0.4628 15 1 8.6718 0.8417 -0.4986 16 6 10.4162 1.9228 -1.1160 17 7 11.1616 2.9856 -0.8990 18 14 10.9958 0.6019 -2.3028 19 1 10.0110 0.4603 -3.4052 20 1 12.3161 0.9854 -2.8640 21 1 11.1213 -0.6906 -1.5822 22 6 2.2145 1.7644 -1.4209 23 6 2.7985 0.9163 -2.3433 24 6 2.9813 1.3339 -3.6479 25 6 2.5891 2.6062 -4.0283 26 9 2.7724 3.0176 -5.3021 27 6 2.0096 3.4568 -3.1022 28 6 1.8227 3.0349 -1.7995 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.5146 3.7677 1.9787 33 1 3.8469 4.4956 1.0496 34 1 2.5231 3.6606 0.2019 35 1 5.3113 3.1598 2.5191 36 1 5.4128 1.4081 2.2200 37 1 6.1919 1.8481 -0.0925 38 1 6.0905 3.5998 0.2066 39 1 7.7523 3.3831 2.0346 40 1 7.8533 1.6315 1.7350 41 1 9.9917 4.4463 0.4837 42 1 9.3052 4.2872 -1.1508 43 1 8.2985 4.9043 0.1811 44 1 12.0122 3.0827 -1.3552 45 1 3.1084 -0.0745 -2.0452 46 1 3.4331 0.6695 -4.3696 47 1 1.7037 4.4495 -3.3976 48 1 1.3703 3.6980 -1.0770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673491111.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:06 Heat of formation + Delta-G solvation = -83.813282 kcal Electronic energy + Delta-G solvation = -30121.880960 eV Core-core repulsion = 25899.135458 eV Total energy + Delta-G solvation = -4222.745502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.98746 -41.64320 -39.86462 -38.49960 -37.85394 -36.70981 -34.25645 -32.98708 -32.22745 -31.75852 -28.85433 -28.12352 -27.86897 -27.20977 -26.01921 -24.11934 -23.95852 -22.79119 -21.96274 -20.36599 -18.94055 -18.78891 -18.43370 -17.89175 -17.77396 -17.23303 -16.87266 -16.67313 -16.37962 -16.18407 -15.88559 -15.59745 -15.55667 -15.03637 -14.76829 -14.65490 -14.56530 -14.44547 -14.33245 -13.95876 -13.76930 -13.41358 -13.32709 -13.22676 -12.92235 -12.78443 -12.71031 -12.58700 -12.50811 -12.37169 -12.24898 -12.12524 -11.99580 -11.90120 -11.43441 -11.14695 -10.70956 -10.64553 -10.15899 -9.72518 -9.66350 -8.78016 -7.85889 -5.32661 -0.07051 0.17433 1.40683 1.42707 1.48669 1.50032 1.75639 2.42913 2.47480 2.92583 3.17875 3.27105 3.46548 3.56866 3.65950 3.71248 3.85070 3.94982 4.07778 4.17944 4.29169 4.34803 4.38251 4.50648 4.53384 4.56982 4.61152 4.72360 4.74659 4.84021 4.85485 4.86444 4.87036 4.93526 4.94181 5.07056 5.14004 5.26018 5.27719 5.31275 5.48821 5.56093 5.59473 5.71867 5.78638 6.00879 6.30821 6.38371 7.11621 7.14334 7.87718 8.27922 9.16995 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.003496 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.617541 B = 8007.610033 C = 9209.017130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.127 3.873 4 H 0.135 0.865 5 C 0.507 3.493 6 O -0.571 6.571 7 N -0.607 5.607 8 C 0.055 3.945 9 C 0.124 3.876 10 C -0.128 4.128 11 C 0.152 3.848 12 N -0.623 5.623 13 C 0.180 3.820 14 C -0.263 4.263 15 H 0.057 0.943 16 C -0.050 4.050 17 N -0.937 5.937 18 Si 0.963 3.037 19 H -0.283 1.283 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.131 4.131 23 C -0.073 4.073 24 C -0.168 4.168 25 C 0.088 3.912 26 F -0.147 7.147 27 C -0.147 4.147 28 C -0.066 4.066 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.016 0.984 43 H 0.033 0.967 44 H 0.249 0.751 45 H 0.116 0.884 46 H 0.135 0.865 47 H 0.168 0.832 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.030 5.378 2.386 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.066 3.934 4 H 0.152 0.848 5 C 0.294 3.706 6 O -0.449 6.449 7 N -0.340 5.340 8 C -0.086 4.086 9 C 0.001 3.999 10 C -0.170 4.170 11 C 0.026 3.974 12 N -0.347 5.347 13 C 0.036 3.964 14 C -0.393 4.393 15 H 0.075 0.925 16 C -0.245 4.245 17 N -0.585 5.585 18 Si 0.791 3.209 19 H -0.210 1.210 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.132 4.132 23 C -0.091 4.091 24 C -0.187 4.187 25 C 0.069 3.931 26 F -0.126 7.126 27 C -0.165 4.165 28 C -0.084 4.084 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.134 0.866 46 H 0.153 0.847 47 H 0.186 0.814 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -28.459 4.729 2.373 28.947 hybrid contribution 1.028 -0.922 -1.358 1.937 sum -27.431 3.807 1.015 27.713 Atomic orbital electron populations 1.23139 0.78267 1.04367 1.01722 1.88058 1.22296 1.25355 1.94822 1.20744 0.93046 0.87733 0.91914 0.84765 1.20849 0.87534 0.83679 0.78493 1.90711 1.64527 1.31752 1.57947 1.47912 1.17147 1.08905 1.60076 1.22453 0.97824 0.84315 1.04042 1.21434 0.79894 1.03273 0.95284 1.22280 0.96111 1.00250 0.98309 1.20804 0.87509 0.99156 0.89944 1.44154 1.47073 1.02977 1.40467 1.20528 0.94663 0.83410 0.97847 1.19393 1.00597 0.93251 1.26071 0.92476 1.25676 0.96083 0.99907 1.02848 1.70214 1.12441 1.30298 1.45510 0.85413 0.77092 0.79202 0.79215 1.20987 1.21173 1.20306 1.20148 1.02274 0.95943 0.94857 1.20872 0.95927 1.00052 0.92265 1.21278 1.03438 0.96110 0.97845 1.18070 1.01143 0.94242 0.79634 1.91491 1.93383 1.90622 1.37113 1.21454 1.00951 1.01182 0.92940 1.21301 0.97179 0.93993 0.95887 0.92496 0.88583 0.91505 0.89179 0.89328 0.89552 0.86822 0.92041 0.96316 0.92102 0.91756 0.94841 0.97843 0.96563 0.94817 0.94155 0.86631 0.84671 0.81402 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.81 113.37 1.23 1.49 16 2 O -0.39 -9.04 9.54 -130.68 -1.25 -10.29 16 3 C 0.13 2.52 1.99 29.10 0.06 2.57 16 4 H 0.14 1.36 6.52 -2.38 -0.02 1.34 16 5 C 0.51 14.46 6.82 87.65 0.60 15.06 16 6 O -0.57 -22.92 16.16 15.28 0.25 -22.67 16 7 N -0.61 -13.99 2.87 -846.75 -2.43 -16.42 16 8 C 0.05 0.61 9.91 127.77 1.27 1.88 16 9 C 0.12 3.38 5.44 86.38 0.47 3.85 16 10 C -0.13 -4.60 5.86 30.59 0.18 -4.42 16 11 C 0.15 6.36 5.65 86.38 0.49 6.85 16 12 N -0.62 -32.97 2.93 -726.93 -2.13 -35.10 16 13 C 0.18 9.17 8.96 127.77 1.15 10.31 16 14 C -0.26 -15.55 9.68 84.03 0.81 -14.74 16 15 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 16 C -0.05 -2.98 5.14 84.86 0.44 -2.54 16 17 N -0.94 -57.48 10.51 21.65 0.23 -57.26 16 18 Si 0.96 48.01 29.57 68.60 2.03 50.03 16 19 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 C -0.13 -2.62 4.72 -19.86 -0.09 -2.71 16 23 C -0.07 -1.89 9.29 22.26 0.21 -1.68 16 24 C -0.17 -4.19 10.03 22.31 0.22 -3.97 16 25 C 0.09 1.99 7.30 22.38 0.16 2.15 16 26 F -0.15 -3.64 17.27 44.97 0.78 -2.86 16 27 C -0.15 -2.29 10.03 22.31 0.22 -2.07 16 28 C -0.07 -0.86 8.29 22.26 0.18 -0.67 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.92 8.05 -2.39 -0.02 0.90 16 34 H 0.09 0.68 3.16 -2.39 -0.01 0.67 16 35 H 0.11 2.24 8.07 -2.39 -0.02 2.22 16 36 H 0.06 1.98 7.36 -2.39 -0.02 1.96 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 40 H 0.03 1.47 8.04 -2.38 -0.02 1.45 16 41 H 0.00 0.18 7.47 -2.39 -0.02 0.16 16 42 H 0.02 0.88 7.08 -2.38 -0.02 0.86 16 43 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 44 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 45 H 0.12 3.48 7.98 -2.91 -0.02 3.46 16 46 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 47 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.18 0.60 6.54 -2.91 -0.02 0.58 16 Total: -1.00 -83.46 397.53 6.01 -77.45 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.95 Total: 5.76 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 7.59 Total: 11.36 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.33 Total: -108.78 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.00 Total: -32.96 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -83.46 6.01 -77.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673491111.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.364 kcal (2) G-P(sol) polarization free energy of solvation -83.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds