Wall clock time and date at job start Tue Mar 31 2020 20:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.36943 * 119.99781 * 274.99955 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99694 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48505 * 109.47256 * 330.00020 * 9 7 5 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 O 1.42899 * 109.46876 * 179.72354 * 19 17 16 21 21 C 1.42901 * 113.99607 * 179.97438 * 20 19 17 22 22 C 1.53006 * 109.46807 * 179.97438 * 21 20 19 23 23 C 1.50705 * 109.46815 * 180.02562 * 22 21 20 24 24 C 1.38267 * 119.98378 * 269.72700 * 23 22 21 25 25 C 1.38232 * 120.04468 * 179.72962 * 24 23 22 26 26 C 1.38211 * 120.02527 * 0.54618 * 25 24 23 27 27 C 1.38438 * 119.97726 * 359.72190 * 26 25 24 28 28 F 1.35102 * 120.02772 * 180.02562 * 27 26 25 29 29 C 1.38173 * 119.98729 * 89.99997 * 23 22 21 30 30 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 32 32 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 33 33 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 34 34 H 0.96999 * 119.99735 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 36 36 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 37 37 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 38 38 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 1.09003 * 109.47075 * 299.99807 * 21 20 19 42 42 H 1.09001 * 109.47248 * 60.00362 * 21 20 19 43 43 H 1.08998 * 109.46948 * 299.99486 * 22 21 20 44 44 H 1.08993 * 109.46974 * 59.99940 * 22 21 20 45 45 H 1.07997 * 119.97637 * 359.97438 * 24 23 22 46 46 H 1.08001 * 119.98055 * 180.26894 * 25 24 23 47 47 H 1.08004 * 120.00805 * 179.75033 * 26 25 24 48 48 H 1.08005 * 120.01557 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.9251 -1.9386 3.4501 9 14 2.7898 0.2703 5.1183 10 1 1.5221 0.1781 5.8864 11 1 3.8947 -0.3222 5.9141 12 1 3.0937 1.6958 4.8340 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 8 0.8836 -0.9084 -5.9334 21 6 0.4234 -0.3313 -7.1570 22 6 0.4189 -1.3979 -8.2540 23 6 -0.0658 -0.7891 -9.5446 24 6 -1.4137 -0.8047 -9.8526 25 6 -1.8604 -0.2417 -11.0334 26 6 -0.9587 0.3275 -11.9127 27 6 0.3917 0.3388 -11.6079 28 9 1.2739 0.8955 -12.4664 29 6 0.8374 -0.2205 -10.4221 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2490 -1.6316 1.1528 34 1 3.2491 -2.3956 4.2420 35 1 3.9337 0.3057 -1.2486 36 1 3.9330 -1.2358 -0.3588 37 1 3.9335 -1.2361 -2.1385 38 1 1.3210 0.9104 -2.4018 39 1 -0.0733 0.4008 -4.6533 40 1 1.6006 0.8308 -5.0792 41 1 -0.5872 0.0535 -7.0198 42 1 1.0865 0.4840 -7.4462 43 1 1.4296 -1.7822 -8.3912 44 1 -0.2439 -2.2135 -7.9651 45 1 -2.1184 -1.2537 -9.1683 46 1 -2.9139 -0.2507 -11.2709 47 1 -1.3075 0.7638 -12.8371 48 1 1.8907 -0.2119 -10.1831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674672810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:07 Heat of formation + Delta-G solvation = -100.468507 kcal Electronic energy + Delta-G solvation = -27685.037184 eV Core-core repulsion = 23461.569457 eV Total energy + Delta-G solvation = -4223.467727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.32768 -39.92416 -39.65145 -37.96204 -36.57767 -33.94140 -33.88610 -31.85410 -31.08421 -30.12711 -29.25363 -28.42780 -27.21358 -24.08285 -24.00126 -23.21194 -22.72868 -21.64197 -20.35223 -20.02737 -17.84958 -17.48239 -17.26845 -17.03971 -16.69955 -16.52403 -16.41188 -16.03417 -15.50440 -14.92817 -14.63804 -14.54452 -14.36789 -13.86251 -13.68325 -13.57196 -13.51569 -13.29459 -13.11124 -12.88157 -12.57352 -12.42893 -12.28599 -11.86548 -11.73262 -11.67436 -11.59655 -11.47876 -11.18222 -10.95979 -10.85711 -10.69207 -10.23238 -9.99776 -9.90940 -9.79569 -9.58161 -9.47710 -9.17032 -9.03397 -8.77298 -7.00825 -5.79222 -3.09032 0.62212 0.68350 2.72111 2.72918 3.08103 3.41628 3.46570 3.48631 3.67867 3.86323 4.22201 4.31311 4.55332 4.56724 4.63449 4.66718 4.71815 4.84510 4.87489 4.93843 4.99011 5.00318 5.29646 5.31707 5.33158 5.47921 5.53614 5.61599 5.64483 5.66640 5.74500 5.79775 5.88722 6.01198 6.09287 6.20731 6.37498 6.38444 6.40963 6.50524 6.60173 6.73922 6.80235 6.94905 7.01934 7.66140 7.66692 8.36264 8.39107 9.49727 10.05042 10.40015 11.43077 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.001447 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.165522 B =19343.334465 C =19494.759959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.718 5.718 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.137 3.863 14 H 0.085 0.915 15 C -0.153 4.153 16 N -0.716 5.716 17 C 0.511 3.489 18 O -0.521 6.521 19 C 0.045 3.955 20 O -0.361 6.361 21 C 0.066 3.934 22 C -0.081 4.081 23 C -0.051 4.051 24 C -0.124 4.124 25 C -0.088 4.088 26 C -0.158 4.158 27 C 0.099 3.901 28 F -0.140 7.140 29 C -0.149 4.149 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.397 0.603 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 6.924 -30.552 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.068 0.932 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.033 3.967 14 H 0.103 0.897 15 C -0.211 4.211 16 N -0.369 5.369 17 C 0.295 3.705 18 O -0.396 6.396 19 C -0.035 4.035 20 O -0.280 6.280 21 C -0.010 4.010 22 C -0.119 4.119 23 C -0.051 4.051 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.177 4.177 27 C 0.080 3.920 28 F -0.118 7.118 29 C -0.168 4.168 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.231 0.769 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.572 5.990 -30.455 32.200 hybrid contribution 0.075 1.112 0.724 1.329 sum -8.497 7.102 -29.731 31.727 Atomic orbital electron populations 1.22451 0.99071 1.01139 0.99783 1.20390 0.92105 0.95571 0.86129 0.93152 1.42290 1.78206 1.10706 1.04789 1.19191 1.36919 0.93894 0.87123 0.91148 1.24743 1.01994 0.95971 0.98047 1.69666 1.50550 1.08641 1.28940 0.86197 0.77294 0.78748 0.83947 1.21754 1.21785 1.20801 1.21349 0.94459 0.97613 0.83286 0.89658 1.22055 0.94888 1.01757 1.02411 1.45968 1.67444 1.13912 1.09621 1.20125 0.78615 0.87614 0.84124 1.90738 1.48533 1.15709 1.84587 1.22228 1.01688 0.92562 0.86998 1.88000 1.87336 1.35384 1.17237 1.22481 0.98760 0.95625 0.84176 1.20488 1.03756 0.97967 0.89662 1.19584 0.93126 0.96982 0.95428 1.21217 0.95164 1.00348 0.97530 1.21042 0.99800 0.96371 0.93435 1.21192 0.91528 1.03176 1.01771 1.17712 0.87234 0.97915 0.89126 1.91515 1.68283 1.83035 1.69013 1.21111 1.01248 1.00872 0.93555 0.93389 0.92649 0.94616 0.78024 0.93436 0.93076 0.90058 0.93424 0.76909 0.90318 0.90359 0.92812 0.92924 0.89443 0.89243 0.84991 0.84810 0.84752 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.33 37.16 0.35 -2.47 16 2 C 0.17 3.14 2.52 -67.93 -0.17 2.97 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.22 4.43 -53.43 -0.24 -17.46 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 9 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.14 2.31 2.20 -67.93 -0.15 2.16 16 14 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 15 C -0.15 -2.64 9.33 37.16 0.35 -2.29 16 16 N -0.72 -9.36 4.38 -53.81 -0.24 -9.60 16 17 C 0.51 7.23 7.87 -10.98 -0.09 7.14 16 18 O -0.52 -9.93 16.16 -14.35 -0.23 -10.16 16 19 C 0.05 0.44 6.42 36.01 0.23 0.68 16 20 O -0.36 -4.18 9.88 -55.14 -0.54 -4.73 16 21 C 0.07 0.51 5.92 37.16 0.22 0.73 16 22 C -0.08 -0.57 5.72 -27.88 -0.16 -0.73 16 23 C -0.05 -0.34 5.13 -104.63 -0.54 -0.87 16 24 C -0.12 -0.71 9.70 -39.57 -0.38 -1.09 16 25 C -0.09 -0.46 10.04 -39.59 -0.40 -0.85 16 26 C -0.16 -0.96 10.03 -39.52 -0.40 -1.36 16 27 C 0.10 0.76 7.30 -39.42 -0.29 0.47 16 28 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 29 C -0.15 -1.06 9.68 -39.52 -0.38 -1.44 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 33 H 0.39 10.02 7.58 -40.82 -0.31 9.71 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.60 7.44 -51.93 -0.39 1.21 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.92 8.39 -40.82 -0.34 3.57 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 44 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 45 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 47 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 48 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -33.49 408.87 -9.10 -42.59 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.70 Total: 8.30 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.05 Total: -3.94 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.25 Total: -53.96 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.78 Total: -14.89 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.49 -9.10 -42.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674672810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.880 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds