Wall clock time and date at job start Tue Mar 31 2020 20:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.36943 * 119.99781 * 274.99955 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99694 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48505 * 109.47256 * 330.00020 * 9 7 5 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 O 1.42899 * 109.46876 * 179.72354 * 19 17 16 21 21 C 1.42901 * 113.99607 * 179.97438 * 20 19 17 22 22 C 1.53006 * 109.46807 * 179.97438 * 21 20 19 23 23 C 1.50705 * 109.46815 * 180.02562 * 22 21 20 24 24 C 1.38267 * 119.98378 * 269.72700 * 23 22 21 25 25 C 1.38232 * 120.04468 * 179.72962 * 24 23 22 26 26 C 1.38211 * 120.02527 * 0.54618 * 25 24 23 27 27 C 1.38438 * 119.97726 * 359.72190 * 26 25 24 28 28 F 1.35102 * 120.02772 * 180.02562 * 27 26 25 29 29 C 1.38173 * 119.98729 * 89.99997 * 23 22 21 30 30 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 32 32 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 33 33 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 34 34 H 0.96999 * 119.99735 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 36 36 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 37 37 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 38 38 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 1.09003 * 109.47075 * 299.99807 * 21 20 19 42 42 H 1.09001 * 109.47248 * 60.00362 * 21 20 19 43 43 H 1.08998 * 109.46948 * 299.99486 * 22 21 20 44 44 H 1.08993 * 109.46974 * 59.99940 * 22 21 20 45 45 H 1.07997 * 119.97637 * 359.97438 * 24 23 22 46 46 H 1.08001 * 119.98055 * 180.26894 * 25 24 23 47 47 H 1.08004 * 120.00805 * 179.75033 * 26 25 24 48 48 H 1.08005 * 120.01557 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8917 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.9251 -1.9386 3.4501 9 14 2.7898 0.2703 5.1183 10 1 1.5221 0.1781 5.8864 11 1 3.8947 -0.3222 5.9141 12 1 3.0937 1.6958 4.8340 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 8 0.8836 -0.9084 -5.9334 21 6 0.4234 -0.3313 -7.1570 22 6 0.4189 -1.3979 -8.2540 23 6 -0.0658 -0.7891 -9.5446 24 6 -1.4137 -0.8047 -9.8526 25 6 -1.8604 -0.2417 -11.0334 26 6 -0.9587 0.3275 -11.9127 27 6 0.3917 0.3388 -11.6079 28 9 1.2739 0.8955 -12.4664 29 6 0.8374 -0.2205 -10.4221 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 2.2490 -1.6316 1.1528 34 1 3.2491 -2.3956 4.2420 35 1 3.9337 0.3057 -1.2486 36 1 3.9330 -1.2358 -0.3588 37 1 3.9335 -1.2361 -2.1385 38 1 1.3210 0.9104 -2.4018 39 1 -0.0733 0.4008 -4.6533 40 1 1.6006 0.8308 -5.0792 41 1 -0.5872 0.0535 -7.0198 42 1 1.0865 0.4840 -7.4462 43 1 1.4296 -1.7822 -8.3912 44 1 -0.2439 -2.2135 -7.9651 45 1 -2.1184 -1.2537 -9.1683 46 1 -2.9139 -0.2507 -11.2709 47 1 -1.3075 0.7638 -12.8371 48 1 1.8907 -0.2119 -10.1831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674672810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:06 Heat of formation + Delta-G solvation = -120.765452 kcal Electronic energy + Delta-G solvation = -27685.917325 eV Core-core repulsion = 23461.569457 eV Total energy + Delta-G solvation = -4224.347868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.91172 -40.97705 -40.22439 -38.84882 -37.96682 -35.57075 -34.43030 -33.56657 -31.57374 -31.41539 -30.13765 -29.97509 -28.08214 -25.89943 -24.65929 -24.16263 -23.66789 -22.17329 -21.54570 -21.48202 -19.37225 -18.38754 -18.25781 -17.63816 -17.53243 -17.10462 -17.06662 -16.84928 -16.60788 -16.38818 -15.87274 -15.56317 -15.30667 -14.97507 -14.93244 -14.75034 -14.40043 -14.19768 -14.07844 -14.05461 -13.69791 -13.40572 -13.17520 -13.16400 -12.90877 -12.73668 -12.70928 -12.56800 -12.27593 -12.23302 -12.18937 -12.13620 -11.95033 -11.71396 -11.44870 -10.97217 -10.80705 -10.65565 -10.08484 -9.94422 -9.65373 -8.99776 -7.90586 -5.19572 0.15304 0.22869 1.50128 1.51360 1.59554 1.64401 1.81681 2.56169 2.61041 2.98035 3.29693 3.43789 3.72284 3.77900 3.84405 3.87086 4.05719 4.09961 4.17877 4.21248 4.21564 4.28363 4.33740 4.36722 4.37612 4.42801 4.49579 4.61368 4.80622 4.81352 4.88358 4.90070 4.98031 5.06677 5.08664 5.13344 5.17015 5.20455 5.32666 5.37500 5.52025 5.54251 5.54897 5.61074 5.93709 6.09866 6.30205 6.64075 7.31649 7.36551 8.10530 8.33306 9.32962 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035927 B = 0.001447 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.165522 B =19343.334465 C =19494.759959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.065 0.935 4 N -0.731 5.731 5 C -0.233 4.233 6 H 0.082 0.918 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.290 1.290 11 H -0.301 1.301 12 H -0.266 1.266 13 C 0.152 3.848 14 H 0.055 0.945 15 C -0.144 4.144 16 N -0.701 5.701 17 C 0.507 3.493 18 O -0.578 6.578 19 C 0.051 3.949 20 O -0.397 6.397 21 C 0.066 3.934 22 C -0.079 4.079 23 C -0.055 4.055 24 C -0.125 4.125 25 C -0.086 4.086 26 C -0.160 4.160 27 C 0.075 3.925 28 F -0.152 7.152 29 C -0.159 4.159 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.371 0.629 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.418 0.582 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.149 0.851 46 H 0.161 0.839 47 H 0.149 0.851 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 9.592 -31.905 35.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.083 0.917 4 N -0.372 5.372 5 C -0.364 4.364 6 H 0.100 0.900 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.218 1.218 11 H -0.228 1.228 12 H -0.191 1.191 13 C 0.046 3.954 14 H 0.074 0.926 15 C -0.202 4.202 16 N -0.355 5.355 17 C 0.294 3.706 18 O -0.457 6.457 19 C -0.028 4.028 20 O -0.316 6.316 21 C -0.010 4.010 22 C -0.116 4.116 23 C -0.056 4.056 24 C -0.143 4.143 25 C -0.104 4.104 26 C -0.179 4.179 27 C 0.056 3.944 28 F -0.131 7.131 29 C -0.178 4.178 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.256 0.744 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.167 0.833 46 H 0.179 0.821 47 H 0.167 0.833 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.458 8.751 -31.852 34.648 hybrid contribution 0.598 0.297 1.023 1.221 sum -9.861 9.049 -30.829 33.609 Atomic orbital electron populations 1.22307 0.97393 1.00496 1.01264 1.20584 0.93045 0.95677 0.84831 0.91739 1.42490 1.78480 1.10223 1.05970 1.19617 1.34602 0.94346 0.87883 0.89994 1.25536 1.03121 0.96807 1.01439 1.69836 1.52709 1.10348 1.29299 0.85169 0.76610 0.78191 0.79951 1.21759 1.22776 1.19085 1.20871 0.93994 0.96298 0.84270 0.92639 1.21932 0.95277 1.02220 1.00779 1.45696 1.66835 1.14703 1.08277 1.21018 0.77268 0.87052 0.85267 1.90722 1.51013 1.18441 1.85488 1.22303 1.04044 0.91989 0.84468 1.87958 1.87954 1.37062 1.18628 1.22629 0.99854 0.95769 0.82774 1.20437 1.03213 0.97996 0.89956 1.19556 0.93603 0.97287 0.95111 1.21489 0.94976 0.99827 0.98008 1.21368 1.00981 0.95262 0.92758 1.21457 0.90988 1.02898 1.02562 1.17983 0.87876 0.99050 0.89450 1.91478 1.68818 1.83405 1.69422 1.21194 1.01580 1.01226 0.93753 0.95116 0.93812 0.90397 0.79754 0.94249 0.91437 0.93126 0.93610 0.74442 0.86894 0.87144 0.91031 0.91872 0.90441 0.89405 0.83301 0.82132 0.83324 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.33 71.98 0.67 -4.33 16 2 C 0.17 6.03 2.52 44.99 0.11 6.14 16 3 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 4 N -0.73 -35.33 4.43 -322.94 -1.43 -36.76 16 5 C -0.23 -12.35 9.93 84.03 0.83 -11.52 16 6 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 9 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 13 C 0.15 5.02 2.20 44.99 0.10 5.12 16 14 H 0.06 2.21 7.58 -2.38 -0.02 2.19 16 15 C -0.14 -4.96 9.33 71.98 0.67 -4.29 16 16 N -0.70 -16.64 4.38 -442.53 -1.94 -18.59 16 17 C 0.51 13.45 7.87 87.66 0.69 14.14 16 18 O -0.58 -22.16 16.16 16.00 0.26 -21.90 16 19 C 0.05 0.83 6.42 71.24 0.46 1.29 16 20 O -0.40 -8.41 9.88 -129.94 -1.28 -9.69 16 21 C 0.07 0.86 5.92 71.98 0.43 1.28 16 22 C -0.08 -1.02 5.72 29.85 0.17 -0.85 16 23 C -0.06 -0.66 5.13 -19.87 -0.10 -0.76 16 24 C -0.13 -1.13 9.70 22.28 0.22 -0.91 16 25 C -0.09 -0.66 10.04 22.26 0.22 -0.44 16 26 C -0.16 -1.70 10.03 22.31 0.22 -1.48 16 27 C 0.08 1.11 7.30 22.37 0.16 1.27 16 28 F -0.15 -2.69 17.27 44.97 0.78 -1.91 16 29 C -0.16 -2.18 9.68 22.31 0.22 -1.96 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.84 7.45 -2.38 -0.02 1.82 16 33 H 0.37 19.96 7.58 -92.72 -0.70 19.26 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.06 7.44 -2.39 -0.02 2.04 16 37 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.42 6.53 8.39 -92.71 -0.78 5.75 16 39 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 44 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 45 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 46 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 47 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 48 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.51 408.87 3.72 -71.79 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.51 Total: 29.85 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.54 Total: -1.16 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.09 Total: -114.31 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.02 Total: -31.60 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -75.51 3.72 -71.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674672810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.974 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds