Wall clock time and date at job start Tue Mar 31 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47275 * 2 1 4 4 C 1.35710 * 117.00319 * 179.97438 * 3 2 1 5 5 C 1.38920 * 120.15982 * 270.22969 * 4 3 2 6 6 F 1.35096 * 119.97698 * 0.04457 * 5 4 3 7 7 C 1.38205 * 120.04306 * 180.29514 * 5 4 3 8 8 C 1.38562 * 120.36727 * 359.72877 * 7 5 4 9 9 C 1.37760 * 120.31627 * 0.02562 * 8 7 5 10 10 C 1.39756 * 119.94890 * 359.97438 * 9 8 7 11 11 C 1.47540 * 120.17834 * 179.97438 * 10 9 8 12 12 O 1.21590 * 120.00267 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00035 * 0.02562 * 11 10 9 14 14 C 1.46500 * 119.99732 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47381 * 35.00069 * 14 13 11 16 16 C 1.53006 * 109.47249 * 274.99921 * 14 13 11 17 17 C 1.52999 * 109.46944 * 155.00564 * 14 13 11 18 18 C 1.53009 * 109.46984 * 294.99645 * 17 14 13 19 19 C 1.52989 * 109.47113 * 179.97438 * 18 17 14 20 20 N 1.46504 * 109.46924 * 180.02562 * 19 18 17 21 21 C 1.36940 * 120.00218 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99900 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00274 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00229 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00184 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47325 * 89.99771 * 25 23 21 27 27 H 1.48500 * 109.47347 * 209.99954 * 25 23 21 28 28 H 1.48505 * 109.46632 * 329.99479 * 25 23 21 29 29 H 1.09001 * 109.47004 * 60.00273 * 1 2 3 30 30 H 1.09000 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47193 * 299.99877 * 1 2 3 32 32 H 1.09003 * 109.47146 * 240.00037 * 2 1 3 33 33 H 1.08997 * 109.47289 * 120.00424 * 2 1 3 34 34 H 1.08001 * 119.81704 * 179.74170 * 7 5 4 35 35 H 1.07995 * 119.84383 * 179.97438 * 8 7 5 36 36 H 1.08001 * 120.02420 * 179.97438 * 9 8 7 37 37 H 0.96998 * 119.99903 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47002 * 60.00085 * 16 14 13 39 39 H 1.08993 * 109.46955 * 180.02562 * 16 14 13 40 40 H 1.09000 * 109.47050 * 300.00351 * 16 14 13 41 41 H 1.08997 * 109.47756 * 54.99315 * 17 14 13 42 42 H 1.09001 * 109.47317 * 175.00198 * 17 14 13 43 43 H 1.08999 * 109.47112 * 300.00392 * 18 17 14 44 44 H 1.09001 * 109.46642 * 60.00139 * 18 17 14 45 45 H 1.08999 * 109.47464 * 300.00192 * 19 18 17 46 46 H 1.09001 * 109.47240 * 60.00521 * 19 18 17 47 47 H 0.96997 * 119.99900 * 359.97438 * 20 19 18 48 48 H 0.97000 * 120.00344 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.0438 1.6119 1.2020 6 9 3.3772 1.5184 2.3732 7 6 5.4131 1.7992 1.1997 8 6 6.1049 1.8958 0.0031 9 6 5.4344 1.8066 -1.1970 10 6 4.0498 1.6173 -1.2102 11 6 3.3264 1.5217 -2.4925 12 8 2.1218 1.3565 -2.5003 13 7 4.0011 1.6164 -3.6555 14 6 3.2828 1.5209 -4.9288 15 1 2.3001 1.9812 -4.8270 16 6 3.1192 0.0489 -5.3129 17 6 4.0759 2.2468 -6.0173 18 6 4.1328 3.7417 -5.6958 19 6 4.9263 4.4675 -6.7839 20 7 4.9813 5.8987 -6.4758 21 6 5.6432 6.7549 -7.3148 22 1 6.1252 6.3750 -8.2036 23 6 5.6957 8.1108 -7.0226 24 7 5.1088 8.5738 -5.9393 25 14 6.5993 9.2787 -8.1668 26 1 5.6587 9.7902 -9.1957 27 1 7.1431 10.4171 -7.3836 28 1 7.7146 8.5570 -8.8306 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9469 1.8704 2.1359 35 1 7.1749 2.0425 0.0112 36 1 5.9783 1.8830 -2.1269 37 1 4.9622 1.7471 -3.6494 38 1 2.5543 -0.4683 -4.5374 39 1 2.5853 -0.0221 -6.2605 40 1 4.1020 -0.4114 -5.4147 41 1 5.0884 1.8453 -6.0582 42 1 3.5879 2.1008 -6.9810 43 1 3.1203 4.1433 -5.6549 44 1 4.6208 3.8877 -4.7322 45 1 5.9388 4.0658 -6.8244 46 1 4.4387 4.3215 -7.7478 47 1 4.5481 6.2399 -5.6778 48 1 5.1452 9.5214 -5.7352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675998338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:10 Heat of formation + Delta-G solvation = -93.914540 kcal Electronic energy + Delta-G solvation = -29261.190933 eV Core-core repulsion = 25038.007408 eV Total energy + Delta-G solvation = -4223.183525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.19277 -40.76516 -39.04945 -37.74338 -36.67555 -34.83368 -32.82103 -32.13641 -31.74740 -30.40263 -29.68487 -29.32090 -25.72649 -24.68670 -23.50308 -23.04841 -22.51829 -21.35923 -20.80471 -20.60004 -18.76849 -17.87029 -17.27774 -17.00953 -16.42070 -16.20042 -16.14591 -15.46048 -15.26380 -14.98745 -14.71516 -14.62161 -14.56067 -14.04968 -13.77826 -13.63918 -13.47083 -13.01989 -12.92183 -12.79768 -12.71484 -12.38767 -12.24364 -12.16695 -12.10662 -11.83268 -11.54930 -11.31997 -11.17436 -10.85448 -10.81063 -10.46749 -10.41564 -10.19077 -10.00674 -9.85108 -9.68027 -9.41036 -9.09658 -9.01489 -8.85777 -6.90512 -5.74783 -3.03756 0.29349 0.63184 2.53801 2.92570 3.13329 3.44089 3.48738 3.49586 3.50796 3.87368 4.28292 4.40483 4.54462 4.59112 4.74627 4.77523 4.87300 4.94704 5.00579 5.03547 5.13498 5.16617 5.37586 5.40375 5.52816 5.53920 5.58227 5.58542 5.61151 5.62842 5.76547 5.78047 5.82843 5.95316 5.98483 6.04064 6.10830 6.19733 6.20388 6.35743 6.41033 6.44870 6.86883 6.90035 7.22212 7.38360 7.70571 8.11068 8.44137 9.54849 10.14014 10.48213 11.48123 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.002454 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.267373 B =11405.752640 C =12557.798455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 O -0.310 6.310 4 C 0.125 3.875 5 C 0.069 3.931 6 F -0.129 7.129 7 C -0.118 4.118 8 C -0.103 4.103 9 C -0.082 4.082 10 C -0.130 4.130 11 C 0.558 3.442 12 O -0.515 6.515 13 N -0.716 5.716 14 C 0.142 3.858 15 H 0.091 0.909 16 C -0.161 4.161 17 C -0.123 4.123 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.399 0.601 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -23.279 13.653 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.002 3.998 3 O -0.226 6.226 4 C 0.078 3.922 5 C 0.049 3.951 6 F -0.108 7.108 7 C -0.137 4.137 8 C -0.121 4.121 9 C -0.101 4.101 10 C -0.134 4.134 11 C 0.344 3.656 12 O -0.391 6.391 13 N -0.369 5.369 14 C 0.038 3.962 15 H 0.109 0.891 16 C -0.220 4.220 17 C -0.161 4.161 18 C -0.164 4.164 19 C 0.026 3.974 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.234 0.766 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.099 -23.210 13.522 26.943 hybrid contribution 0.950 0.874 -0.092 1.295 sum -1.149 -22.335 13.431 26.088 Atomic orbital electron populations 1.21699 0.92817 1.02264 1.03637 1.22636 0.96070 0.81154 0.99986 1.86042 1.15148 1.27617 1.93793 1.18643 0.84530 0.99056 0.89973 1.18010 0.90494 1.05616 0.80947 1.91517 1.80684 1.93668 1.44904 1.21307 0.91766 1.00113 1.00525 1.21008 1.00945 0.99230 0.90900 1.21380 0.92359 0.96956 0.99368 1.20320 0.93947 1.05777 0.93346 1.17861 0.87089 0.77343 0.83267 1.90818 1.13370 1.47704 1.87214 1.46011 1.11491 1.73905 1.05456 1.21070 0.97122 0.95824 0.82138 0.89115 1.22169 1.01911 0.96057 1.01830 1.21857 1.00365 0.95890 0.98007 1.21740 1.01362 0.93391 0.99918 1.20641 0.96084 0.85770 0.94938 1.42389 1.65363 1.01210 1.28921 1.19234 1.26082 0.88687 1.03111 0.91234 1.24755 1.01361 0.96990 0.98002 1.69662 1.48690 1.13472 1.26373 0.86190 0.79268 0.80859 0.79874 1.21711 1.21759 1.20783 0.90924 0.90883 0.91920 0.92518 0.93638 0.83760 0.83801 0.84263 0.76552 0.92376 0.91457 0.92542 0.91423 0.90165 0.91887 0.92081 0.96608 0.96523 0.78315 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.08 0.84 6.13 37.16 0.23 1.07 16 3 O -0.31 -4.37 8.35 -40.72 -0.34 -4.71 16 4 C 0.12 1.58 5.74 -38.65 -0.22 1.36 16 5 C 0.07 0.76 7.30 -39.34 -0.29 0.48 16 6 F -0.13 -1.53 17.11 2.25 0.04 -1.49 16 7 C -0.12 -0.96 10.01 -39.47 -0.40 -1.35 16 8 C -0.10 -0.74 10.02 -39.64 -0.40 -1.14 16 9 C -0.08 -0.69 9.53 -39.19 -0.37 -1.07 16 10 C -0.13 -1.51 5.88 -104.86 -0.62 -2.12 16 11 C 0.56 7.27 7.73 -12.47 -0.10 7.17 16 12 O -0.52 -8.22 13.66 -16.60 -0.23 -8.44 16 13 N -0.72 -7.71 4.48 -54.84 -0.25 -7.96 16 14 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 15 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 16 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 17 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16 18 C -0.13 -1.97 5.22 -26.73 -0.14 -2.11 16 19 C 0.15 3.05 6.26 -4.05 -0.03 3.02 16 20 N -0.73 -19.00 5.60 -59.91 -0.34 -19.33 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.02 -0.44 5.50 -17.44 -0.10 -0.54 16 24 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 25 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.14 -51.94 -0.42 0.16 16 32 H 0.06 0.65 7.49 -51.93 -0.39 0.26 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.14 0.86 6.40 -52.49 -0.34 0.52 16 37 H 0.40 3.44 6.63 -40.82 -0.27 3.17 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -34.81 403.03 -9.04 -43.86 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.57 Total: 6.96 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.14 Total: -4.53 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.14 Total: -55.28 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.57 Total: -13.16 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.81 -9.04 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675998338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.056 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds