Wall clock time and date at job start Tue Mar 31 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47041 * 2 1 4 4 C 1.35706 * 116.99571 * 179.97438 * 3 2 1 5 5 C 1.38917 * 120.16122 * 269.97685 * 4 3 2 6 6 F 1.35109 * 119.97705 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.04547 * 180.02562 * 5 4 3 8 8 C 1.38557 * 120.36628 * 0.02562 * 7 5 4 9 9 C 1.37754 * 120.31616 * 359.72118 * 8 7 5 10 10 C 1.39756 * 119.95275 * 0.53668 * 9 8 7 11 11 C 1.47537 * 120.18126 * 179.74090 * 10 9 8 12 12 O 1.21593 * 119.99856 * 179.72594 * 11 10 9 13 13 N 1.34777 * 120.00133 * 359.45146 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27865 * 13 11 10 15 15 H 1.08999 * 109.46902 * 324.99605 * 14 13 11 16 16 C 1.52995 * 109.47009 * 84.99752 * 14 13 11 17 17 C 1.53001 * 109.46711 * 204.99467 * 14 13 11 18 18 C 1.52999 * 109.47063 * 65.00206 * 17 14 13 19 19 C 1.52999 * 109.47407 * 179.97438 * 18 17 14 20 20 N 1.46501 * 109.47506 * 179.97438 * 19 18 17 21 21 C 1.36933 * 120.00196 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99970 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00213 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99763 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00032 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47037 * 90.00381 * 25 23 21 27 27 H 1.48502 * 109.46848 * 209.99809 * 25 23 21 28 28 H 1.48492 * 109.47274 * 330.00108 * 25 23 21 29 29 H 1.09003 * 109.46775 * 60.00131 * 1 2 3 30 30 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47210 * 299.99862 * 1 2 3 32 32 H 1.09007 * 109.47036 * 239.99934 * 2 1 3 33 33 H 1.08994 * 109.46922 * 120.00150 * 2 1 3 34 34 H 1.08007 * 119.81620 * 180.02562 * 7 5 4 35 35 H 1.08004 * 119.84079 * 180.02562 * 8 7 5 36 36 H 1.08005 * 120.02848 * 180.29959 * 9 8 7 37 37 H 0.97000 * 119.99736 * 0.27139 * 13 11 10 38 38 H 1.09001 * 109.47135 * 299.99446 * 16 14 13 39 39 H 1.08999 * 109.47409 * 60.00164 * 16 14 13 40 40 H 1.09007 * 109.46569 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46960 * 184.99759 * 17 14 13 42 42 H 1.09000 * 109.47563 * 304.99932 * 17 14 13 43 43 H 1.09001 * 109.47390 * 299.99641 * 18 17 14 44 44 H 1.09005 * 109.47602 * 59.99582 * 18 17 14 45 45 H 1.08996 * 109.47540 * 300.00111 * 19 18 17 46 46 H 1.09000 * 109.47048 * 59.99832 * 19 18 17 47 47 H 0.97001 * 119.99859 * 359.97438 * 20 19 18 48 48 H 0.96998 * 120.00396 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5250 0.0005 5 6 4.0431 1.6171 1.2019 6 9 3.3757 1.5291 2.3734 7 6 5.4132 1.7986 1.1997 8 6 6.1056 1.8904 0.0031 9 6 5.4358 1.7959 -1.1969 10 6 4.0497 1.6178 -1.2102 11 6 3.3264 1.5216 -2.4926 12 8 2.1211 1.3616 -2.5002 13 7 4.0010 1.6167 -3.6555 14 6 3.2820 1.5274 -4.9288 15 1 2.4562 0.8226 -4.8310 16 6 2.7343 2.9060 -5.3030 17 6 4.2380 1.0446 -6.0215 18 6 4.6887 -0.3840 -5.7100 19 6 5.6442 -0.8671 -6.8029 20 7 6.0763 -2.2347 -6.5044 21 6 6.9404 -2.8794 -7.3486 22 1 7.3032 -2.3798 -8.2347 23 6 7.3494 -4.1755 -7.0660 24 7 6.9069 -4.7845 -5.9864 25 14 8.5278 -5.0552 -8.2180 26 1 9.9259 -4.7870 -7.7953 27 1 8.2680 -6.5165 -8.1704 28 1 8.3262 -4.5614 -9.6039 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.9471 1.8693 2.1359 35 1 7.1763 2.0319 0.0112 36 1 5.9808 1.8633 -2.1270 37 1 4.9626 1.7444 -3.6493 38 1 2.0532 3.2500 -4.5246 39 1 3.5601 3.6108 -5.4008 40 1 2.1997 2.8396 -6.2507 41 1 3.7278 1.0627 -6.9845 42 1 5.1080 1.7001 -6.0587 43 1 5.1988 -0.4023 -4.7469 44 1 3.8186 -1.0396 -5.6727 45 1 5.1338 -0.8490 -7.7659 46 1 6.5143 -0.2116 -6.8406 47 1 5.7507 -2.6833 -5.7084 48 1 7.1923 -5.6903 -5.7891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675998339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:14 Heat of formation + Delta-G solvation = -94.479287 kcal Electronic energy + Delta-G solvation = -29326.914558 eV Core-core repulsion = 25103.706544 eV Total energy + Delta-G solvation = -4223.208014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.18545 -40.75578 -39.03872 -37.72396 -36.67946 -34.84876 -32.82800 -32.09686 -31.74805 -30.40492 -29.66613 -29.32216 -25.73062 -24.68282 -23.46620 -23.05970 -22.49080 -21.35630 -20.82451 -20.59645 -18.75663 -17.84795 -17.26257 -17.03163 -16.41694 -16.23788 -16.11594 -15.43703 -15.20113 -14.99210 -14.68972 -14.61102 -14.58174 -14.08992 -13.80493 -13.57546 -13.49645 -13.01485 -12.86520 -12.79374 -12.72050 -12.36749 -12.21540 -12.15618 -12.11862 -11.79935 -11.50474 -11.32573 -11.17120 -10.87525 -10.81961 -10.49325 -10.42488 -10.16846 -10.02799 -9.82874 -9.69729 -9.40684 -9.09490 -9.00805 -8.87794 -6.92752 -5.77202 -3.05971 0.29647 0.63682 2.53892 2.93555 3.13775 3.42354 3.47393 3.49405 3.53419 3.87276 4.28473 4.40810 4.54105 4.58659 4.74540 4.77891 4.93948 4.97209 5.03418 5.07767 5.13186 5.26441 5.38530 5.40908 5.53526 5.56554 5.57420 5.60937 5.62322 5.64889 5.76826 5.82412 5.84342 5.94803 6.02406 6.06450 6.09666 6.18693 6.21067 6.33857 6.38896 6.45003 6.84614 6.88010 7.23933 7.38535 7.68730 8.11266 8.41846 9.52655 10.11591 10.45829 11.45768 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002521 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.087348 B =11101.997918 C =11871.661706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 O -0.312 6.312 4 C 0.125 3.875 5 C 0.069 3.931 6 F -0.129 7.129 7 C -0.118 4.118 8 C -0.103 4.103 9 C -0.082 4.082 10 C -0.130 4.130 11 C 0.558 3.442 12 O -0.515 6.515 13 N -0.716 5.716 14 C 0.143 3.857 15 H 0.090 0.910 16 C -0.162 4.162 17 C -0.123 4.123 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.399 0.601 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 17.817 13.764 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.229 6.229 4 C 0.078 3.922 5 C 0.049 3.951 6 F -0.108 7.108 7 C -0.137 4.137 8 C -0.121 4.121 9 C -0.101 4.101 10 C -0.134 4.134 11 C 0.344 3.656 12 O -0.391 6.391 13 N -0.369 5.369 14 C 0.039 3.961 15 H 0.108 0.892 16 C -0.220 4.220 17 C -0.162 4.162 18 C -0.164 4.164 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.234 0.766 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.216 0.784 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.688 17.774 13.622 23.677 hybrid contribution 1.205 -0.822 -0.088 1.462 sum -6.483 16.952 13.534 22.640 Atomic orbital electron populations 1.21694 0.92803 1.02441 1.03345 1.22679 0.96021 0.80908 1.00417 1.86001 1.15106 1.27915 1.93833 1.18634 0.84663 0.98949 0.89956 1.18010 0.90488 1.05632 0.80946 1.91520 1.80648 1.93714 1.44902 1.21305 0.91720 1.00163 1.00519 1.21004 1.00876 0.99337 0.90902 1.21378 0.92283 0.97030 0.99365 1.20318 0.93954 1.05783 0.93354 1.17862 0.87133 0.77302 0.83271 1.90820 1.13381 1.47696 1.87213 1.46014 1.11398 1.74004 1.05462 1.21061 0.95395 0.97518 0.82112 0.89189 1.22173 1.01232 0.96743 1.01900 1.21860 0.98925 0.97352 0.98015 1.21737 1.00008 0.94721 0.99895 1.20645 0.94311 0.87550 0.94956 1.42383 1.55299 1.11174 1.29018 1.19239 1.18726 0.95951 1.03174 0.91223 1.24750 1.01021 0.97251 0.98068 1.69661 1.48318 1.13509 1.26774 0.86186 0.80824 0.79014 0.80159 1.21723 1.21750 1.20762 0.91046 0.90713 0.92064 0.92177 0.93471 0.83771 0.83813 0.84272 0.76552 0.92216 0.92531 0.91491 0.90152 0.91396 0.92118 0.91940 0.96487 0.96588 0.78353 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.07 0.90 6.14 37.16 0.23 1.13 16 3 O -0.31 -4.41 8.34 -40.71 -0.34 -4.75 16 4 C 0.12 1.58 5.74 -38.65 -0.22 1.36 16 5 C 0.07 0.76 7.30 -39.34 -0.29 0.48 16 6 F -0.13 -1.53 17.11 2.25 0.04 -1.49 16 7 C -0.12 -0.96 10.01 -39.48 -0.40 -1.36 16 8 C -0.10 -0.74 10.02 -39.64 -0.40 -1.14 16 9 C -0.08 -0.69 9.53 -39.19 -0.37 -1.07 16 10 C -0.13 -1.51 5.88 -104.86 -0.62 -2.13 16 11 C 0.56 7.27 7.73 -12.47 -0.10 7.17 16 12 O -0.52 -8.22 13.67 -16.61 -0.23 -8.44 16 13 N -0.72 -7.72 4.48 -54.85 -0.25 -7.96 16 14 C 0.14 1.59 2.57 -67.93 -0.17 1.41 16 15 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 16 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 17 C -0.12 -1.39 4.75 -26.73 -0.13 -1.51 16 18 C -0.13 -1.92 5.22 -26.73 -0.14 -2.06 16 19 C 0.15 3.00 6.26 -4.04 -0.03 2.97 16 20 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 21 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 25 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.80 7.50 -51.92 -0.39 0.41 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.14 0.86 6.40 -52.48 -0.34 0.53 16 37 H 0.40 3.44 6.63 -40.82 -0.27 3.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 10.31 7.67 -40.82 -0.31 9.99 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -34.22 403.05 -9.04 -43.26 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.57 Total: 7.23 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.14 Total: -4.54 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.14 Total: -54.71 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.57 Total: -13.19 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.22 -9.04 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675998339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.218 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds