Wall clock time and date at job start Tue Mar 31 2020 21:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47041 * 2 1 4 4 C 1.35706 * 116.99571 * 179.97438 * 3 2 1 5 5 C 1.38917 * 120.16122 * 269.97685 * 4 3 2 6 6 F 1.35109 * 119.97705 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.04547 * 180.02562 * 5 4 3 8 8 C 1.38557 * 120.36628 * 0.02562 * 7 5 4 9 9 C 1.37754 * 120.31616 * 359.72118 * 8 7 5 10 10 C 1.39756 * 119.95275 * 0.53668 * 9 8 7 11 11 C 1.47537 * 120.18126 * 179.74090 * 10 9 8 12 12 O 1.21593 * 119.99856 * 179.72594 * 11 10 9 13 13 N 1.34777 * 120.00133 * 359.45146 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27865 * 13 11 10 15 15 H 1.08999 * 109.46902 * 324.99605 * 14 13 11 16 16 C 1.52995 * 109.47009 * 84.99752 * 14 13 11 17 17 C 1.53001 * 109.46711 * 204.99467 * 14 13 11 18 18 C 1.52999 * 109.47063 * 65.00206 * 17 14 13 19 19 C 1.52999 * 109.47407 * 179.97438 * 18 17 14 20 20 N 1.46501 * 109.47506 * 179.97438 * 19 18 17 21 21 C 1.36933 * 120.00196 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99970 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00213 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99763 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00032 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47037 * 90.00381 * 25 23 21 27 27 H 1.48502 * 109.46848 * 209.99809 * 25 23 21 28 28 H 1.48492 * 109.47274 * 330.00108 * 25 23 21 29 29 H 1.09003 * 109.46775 * 60.00131 * 1 2 3 30 30 H 1.08999 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47210 * 299.99862 * 1 2 3 32 32 H 1.09007 * 109.47036 * 239.99934 * 2 1 3 33 33 H 1.08994 * 109.46922 * 120.00150 * 2 1 3 34 34 H 1.08007 * 119.81620 * 180.02562 * 7 5 4 35 35 H 1.08004 * 119.84079 * 180.02562 * 8 7 5 36 36 H 1.08005 * 120.02848 * 180.29959 * 9 8 7 37 37 H 0.97000 * 119.99736 * 0.27139 * 13 11 10 38 38 H 1.09001 * 109.47135 * 299.99446 * 16 14 13 39 39 H 1.08999 * 109.47409 * 60.00164 * 16 14 13 40 40 H 1.09007 * 109.46569 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.46960 * 184.99759 * 17 14 13 42 42 H 1.09000 * 109.47563 * 304.99932 * 17 14 13 43 43 H 1.09001 * 109.47390 * 299.99641 * 18 17 14 44 44 H 1.09005 * 109.47602 * 59.99582 * 18 17 14 45 45 H 1.08996 * 109.47540 * 300.00111 * 19 18 17 46 46 H 1.09000 * 109.47048 * 59.99832 * 19 18 17 47 47 H 0.97001 * 119.99859 * 359.97438 * 20 19 18 48 48 H 0.96998 * 120.00396 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5250 0.0005 5 6 4.0431 1.6171 1.2019 6 9 3.3757 1.5291 2.3734 7 6 5.4132 1.7986 1.1997 8 6 6.1056 1.8904 0.0031 9 6 5.4358 1.7959 -1.1969 10 6 4.0497 1.6178 -1.2102 11 6 3.3264 1.5216 -2.4926 12 8 2.1211 1.3616 -2.5002 13 7 4.0010 1.6167 -3.6555 14 6 3.2820 1.5274 -4.9288 15 1 2.4562 0.8226 -4.8310 16 6 2.7343 2.9060 -5.3030 17 6 4.2380 1.0446 -6.0215 18 6 4.6887 -0.3840 -5.7100 19 6 5.6442 -0.8671 -6.8029 20 7 6.0763 -2.2347 -6.5044 21 6 6.9404 -2.8794 -7.3486 22 1 7.3032 -2.3798 -8.2347 23 6 7.3494 -4.1755 -7.0660 24 7 6.9069 -4.7845 -5.9864 25 14 8.5278 -5.0552 -8.2180 26 1 9.9259 -4.7870 -7.7953 27 1 8.2680 -6.5165 -8.1704 28 1 8.3262 -4.5614 -9.6039 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.9471 1.8693 2.1359 35 1 7.1763 2.0319 0.0112 36 1 5.9808 1.8633 -2.1270 37 1 4.9626 1.7444 -3.6493 38 1 2.0532 3.2500 -4.5246 39 1 3.5601 3.6108 -5.4008 40 1 2.1997 2.8396 -6.2507 41 1 3.7278 1.0627 -6.9845 42 1 5.1080 1.7001 -6.0587 43 1 5.1988 -0.4023 -4.7469 44 1 3.8186 -1.0396 -5.6727 45 1 5.1338 -0.8490 -7.7659 46 1 6.5143 -0.2116 -6.8406 47 1 5.7507 -2.6833 -5.7084 48 1 7.1923 -5.6903 -5.7891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675998339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:13 Heat of formation + Delta-G solvation = -115.088563 kcal Electronic energy + Delta-G solvation = -29327.808244 eV Core-core repulsion = 25103.706544 eV Total energy + Delta-G solvation = -4224.101700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.02589 -41.63900 -39.96850 -38.53574 -37.86348 -36.47729 -34.24377 -33.12505 -32.88110 -31.61044 -30.58213 -30.43848 -27.23146 -25.60636 -24.69404 -24.31444 -23.37610 -22.49808 -22.08066 -21.54733 -19.62390 -19.11178 -18.68395 -18.10994 -17.32271 -17.14174 -17.00693 -16.62306 -16.21223 -16.08218 -15.93524 -15.78767 -15.51201 -15.31929 -15.29455 -14.99860 -14.48489 -14.36737 -13.87909 -13.63642 -13.47752 -13.39304 -13.23464 -13.10633 -12.99963 -12.91646 -12.76540 -12.65063 -12.39069 -12.37042 -12.23413 -12.06694 -11.85027 -11.69892 -11.49120 -11.15149 -10.92313 -10.79327 -10.24780 -9.96537 -9.77760 -8.99695 -7.95127 -5.24301 -0.47548 -0.10538 1.47760 1.49625 1.58172 1.72033 2.05430 2.29192 2.56405 2.72502 3.08527 3.38768 3.52560 3.65966 3.76054 3.86137 3.98945 4.04752 4.09528 4.12998 4.16029 4.26043 4.30176 4.31846 4.41363 4.59690 4.65937 4.68961 4.80467 4.83476 4.86029 4.88046 4.93334 4.95409 5.01439 5.03515 5.13794 5.15517 5.16674 5.32309 5.37955 5.44289 5.51544 5.53908 5.57819 6.27411 6.34454 6.51486 7.19470 7.33054 8.10542 8.32272 9.28623 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002521 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.087348 B =11101.997918 C =11871.661706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 O -0.334 6.334 4 C 0.094 3.906 5 C 0.049 3.951 6 F -0.140 7.140 7 C -0.106 4.106 8 C -0.091 4.091 9 C -0.075 4.075 10 C -0.151 4.151 11 C 0.552 3.448 12 O -0.555 6.555 13 N -0.706 5.706 14 C 0.146 3.854 15 H 0.064 0.936 16 C -0.154 4.154 17 C -0.109 4.109 18 C -0.113 4.113 19 C 0.150 3.850 20 N -0.751 5.751 21 C -0.246 4.246 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.975 3.025 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.165 0.835 37 H 0.411 0.589 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.018 0.982 46 H 0.028 0.972 47 H 0.371 0.629 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 19.299 13.169 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 O -0.251 6.251 4 C 0.047 3.953 5 C 0.029 3.971 6 F -0.119 7.119 7 C -0.124 4.124 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.155 4.155 11 C 0.340 3.660 12 O -0.434 6.434 13 N -0.359 5.359 14 C 0.042 3.958 15 H 0.082 0.918 16 C -0.212 4.212 17 C -0.147 4.147 18 C -0.151 4.151 19 C 0.024 3.976 20 N -0.393 5.393 21 C -0.378 4.378 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.191 0.809 35 H 0.201 0.799 36 H 0.183 0.817 37 H 0.249 0.751 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.203 0.797 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.284 19.311 12.993 23.867 hybrid contribution 0.504 -1.226 0.094 1.329 sum -4.780 18.084 13.087 22.829 Atomic orbital electron populations 1.21688 0.91646 1.03557 1.02828 1.22717 0.97038 0.80668 0.99721 1.85964 1.16550 1.28535 1.94034 1.18994 0.84363 1.00681 0.91214 1.18267 0.91664 1.07052 0.80106 1.91484 1.81135 1.93986 1.45275 1.21714 0.90351 0.97984 1.02389 1.21486 1.02593 0.97099 0.89700 1.21737 0.90892 0.95492 1.01282 1.20331 0.95331 1.07655 0.92173 1.18201 0.86868 0.76674 0.84281 1.90794 1.15151 1.49656 1.87809 1.45935 1.11968 1.73132 1.04841 1.20979 0.94739 0.97923 0.82174 0.91783 1.22092 1.01515 0.95846 1.01768 1.21756 0.99815 0.94786 0.98324 1.21596 0.98223 0.96854 0.98433 1.20858 0.95426 0.84999 0.96306 1.42660 1.55078 1.13291 1.28301 1.19670 1.18398 0.96276 1.03423 0.90493 1.25604 1.03265 0.98287 0.99841 1.69824 1.50069 1.13591 1.28735 0.85123 0.78647 0.77195 0.78708 1.21112 1.22348 1.19375 0.92690 0.88785 0.91289 0.94176 0.92676 0.80854 0.79862 0.81743 0.75072 0.94110 0.90698 0.90259 0.89065 0.88997 0.92227 0.93801 0.96371 0.95367 0.79731 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 10.28 71.98 0.74 -2.37 16 2 C 0.07 1.92 6.14 71.98 0.44 2.36 16 3 O -0.33 -10.12 8.34 -69.34 -0.58 -10.69 16 4 C 0.09 2.46 5.74 22.88 0.13 2.60 16 5 C 0.05 1.07 7.30 22.42 0.16 1.23 16 6 F -0.14 -3.38 17.11 44.97 0.77 -2.61 16 7 C -0.11 -1.46 10.01 22.34 0.22 -1.24 16 8 C -0.09 -0.99 10.02 22.23 0.22 -0.77 16 9 C -0.08 -1.11 9.53 22.52 0.21 -0.89 16 10 C -0.15 -3.51 5.88 -20.02 -0.12 -3.62 16 11 C 0.55 14.78 7.73 86.70 0.67 15.45 16 12 O -0.56 -18.92 13.67 16.92 0.23 -18.69 16 13 N -0.71 -14.62 4.48 -445.70 -2.00 -16.62 16 14 C 0.15 3.11 2.57 44.99 0.12 3.23 16 15 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 16 C -0.15 -2.78 9.48 71.98 0.68 -2.10 16 17 C -0.11 -2.20 4.75 30.59 0.15 -2.05 16 18 C -0.11 -3.34 5.22 30.59 0.16 -3.18 16 19 C 0.15 5.68 6.26 86.38 0.54 6.22 16 20 N -0.75 -38.14 5.60 -343.46 -1.92 -40.07 16 21 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 24 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 25 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.19 7.50 -2.38 -0.02 1.17 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 36 H 0.17 1.47 6.40 -2.91 -0.02 1.45 16 37 H 0.41 6.18 6.63 -92.71 -0.61 5.57 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 44 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.37 20.27 7.67 -92.71 -0.71 19.56 16 48 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -76.85 403.05 4.10 -72.75 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.35 Total: 29.55 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.64 Total: -2.02 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.64 Total: -116.09 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.35 Total: -29.38 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.77 Total: -2.61 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -76.85 4.10 -72.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675998339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.335 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds