Wall clock time and date at job start Tue Mar 31 2020 21:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00010 * 2 1 4 4 C 1.52995 * 109.47361 * 270.00240 * 3 2 1 5 5 H 1.09000 * 109.47530 * 59.99400 * 4 3 2 6 6 O 1.42910 * 109.46854 * 299.99888 * 4 3 2 7 7 C 1.53001 * 109.47416 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47086 * 184.99500 * 7 4 3 9 9 C 1.36945 * 119.99892 * 179.97438 * 8 7 4 10 10 H 1.08000 * 119.99422 * 359.72792 * 9 8 7 11 11 C 1.38811 * 120.00031 * 179.72716 * 9 8 7 12 12 N 1.31616 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47389 * 59.99917 * 13 11 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47102 * 299.99569 * 13 11 9 17 17 C 1.34778 * 120.00040 * 180.02562 * 2 1 3 18 18 O 1.21275 * 120.00021 * 180.02562 * 17 2 1 19 19 C 1.50698 * 119.99925 * 359.97438 * 17 2 1 20 20 C 1.53004 * 109.46858 * 180.02562 * 19 17 2 21 21 C 1.53001 * 109.46879 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.47212 * 180.02562 * 21 20 19 23 23 C 1.38242 * 119.97059 * 269.73050 * 22 21 20 24 24 C 1.38203 * 120.02292 * 179.72299 * 23 22 21 25 25 C 1.38455 * 119.97325 * 0.57027 * 24 23 22 26 26 F 1.35100 * 120.02636 * 179.68435 * 25 24 23 27 27 C 1.38461 * 119.94889 * 359.70243 * 25 24 23 28 28 C 1.38193 * 119.97280 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.46816 * 90.00016 * 1 2 3 30 30 H 1.09006 * 109.47227 * 209.99426 * 1 2 3 31 31 H 1.08996 * 109.47331 * 329.99780 * 1 2 3 32 32 H 1.09000 * 109.47289 * 149.99492 * 3 2 1 33 33 H 1.09008 * 109.46897 * 29.99999 * 3 2 1 34 34 H 0.96698 * 113.99389 * 299.99879 * 6 4 3 35 35 H 1.08998 * 109.47065 * 64.99277 * 7 4 3 36 36 H 1.09001 * 109.46892 * 304.99541 * 7 4 3 37 37 H 0.97000 * 120.00738 * 359.73142 * 8 7 4 38 38 H 0.97004 * 119.99151 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.47644 * 300.00268 * 19 17 2 40 40 H 1.08998 * 109.47105 * 60.00513 * 19 17 2 41 41 H 1.08993 * 109.47064 * 299.99995 * 20 19 17 42 42 H 1.08996 * 109.47076 * 60.00842 * 20 19 17 43 43 H 1.09003 * 109.47634 * 300.00268 * 21 20 19 44 44 H 1.09002 * 109.47024 * 59.99994 * 21 20 19 45 45 H 1.07998 * 119.99035 * 359.97336 * 23 22 21 46 46 H 1.07999 * 120.01145 * 180.24753 * 24 23 22 47 47 H 1.07996 * 120.01289 * 179.97438 * 27 25 24 48 48 H 1.08004 * 119.98592 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2180 3.0352 -1.4424 8 7 3.3580 3.5182 -2.8183 9 6 4.0123 4.6951 -3.0676 10 1 4.4213 5.2693 -2.2493 11 6 4.1499 5.1501 -4.3718 12 7 3.6511 4.4505 -5.3688 13 14 5.0431 6.7551 -4.7117 14 1 6.4396 6.6591 -4.2161 15 1 5.0530 7.0160 -6.1736 16 1 4.3461 7.8665 -4.0158 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1672 -0.0001 19 6 1.3854 -2.4723 -0.0005 20 6 2.3797 -3.6352 -0.0005 21 6 1.6147 -4.9602 -0.0012 22 6 2.5940 -6.1057 -0.0005 23 6 3.0393 -6.6342 -1.1978 24 6 3.9418 -7.6809 -1.1985 25 6 4.3908 -8.2079 0.0005 26 9 5.2681 -9.2354 0.0011 27 6 3.9397 -7.6815 1.1990 28 6 3.0416 -6.6311 1.1972 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.1499 1.1384 0.5139 33 1 1.6083 2.0284 0.5139 34 1 4.0873 0.5461 -1.7125 35 1 4.2062 2.8837 -1.0082 36 1 2.6710 3.7709 -0.8529 37 1 2.9903 3.0028 -3.5532 38 1 3.7469 4.7686 -6.2801 39 1 0.7590 -2.5303 0.8897 40 1 0.7585 -2.5299 -0.8903 41 1 3.0063 -3.5774 -0.8905 42 1 3.0062 -3.5775 0.8895 43 1 0.9877 -5.0183 0.8886 44 1 0.9883 -5.0177 -0.8914 45 1 2.6850 -6.2264 -2.1329 46 1 4.2927 -8.0910 -2.1340 47 1 4.2889 -8.0920 2.1349 48 1 2.6899 -6.2200 2.1320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677116147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:54 Heat of formation + Delta-G solvation = -107.184003 kcal Electronic energy + Delta-G solvation = -28126.035664 eV Core-core repulsion = 23902.276732 eV Total energy + Delta-G solvation = -4223.758932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.19131 -40.09875 -39.51208 -37.32934 -35.29152 -35.03555 -33.95469 -31.55556 -31.49739 -31.13405 -29.44624 -27.23737 -26.87849 -25.11180 -23.42420 -23.20539 -22.24576 -21.23109 -21.06740 -19.16883 -18.00536 -17.15193 -17.12768 -16.83221 -16.53827 -16.19876 -15.89965 -15.81531 -15.25535 -15.01739 -14.67549 -14.40892 -14.36211 -13.93891 -13.76404 -13.59703 -13.42491 -13.34646 -13.01343 -12.93445 -12.68978 -12.45157 -12.31336 -12.17005 -12.01751 -11.75440 -11.52181 -11.39135 -11.32757 -10.92376 -10.91665 -10.78186 -10.62482 -10.16892 -9.86535 -9.73225 -9.52076 -9.47363 -8.87320 -8.86547 -8.48335 -6.89241 -5.72355 -3.01637 0.77583 0.86767 2.67529 2.95836 3.22028 3.45886 3.49855 3.51372 3.92938 4.29069 4.32274 4.41359 4.54247 4.60003 4.69022 4.81731 4.88322 4.90109 4.93644 4.99569 5.05555 5.15363 5.21898 5.30586 5.36749 5.39791 5.41432 5.53063 5.54514 5.57490 5.69334 5.72034 5.76436 5.77269 5.84224 5.87608 6.04657 6.09830 6.20149 6.27173 6.47415 6.53763 6.56026 6.78095 7.35769 7.70701 8.19638 8.25726 8.46141 9.57119 10.15507 10.51150 11.50050 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.001763 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.552082 B =15875.854188 C =17016.689932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.084 3.916 4 C 0.087 3.913 5 H 0.094 0.906 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.518 3.482 18 O -0.535 6.535 19 C -0.138 4.138 20 C -0.099 4.099 21 C -0.081 4.081 22 C -0.088 4.088 23 C -0.086 4.086 24 C -0.151 4.151 25 C 0.090 3.910 26 F -0.142 7.142 27 C -0.152 4.152 28 C -0.088 4.088 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.374 0.626 35 H 0.020 0.980 36 H 0.024 0.976 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -24.357 16.120 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.039 4.039 4 C 0.026 3.974 5 H 0.112 0.888 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.306 3.694 18 O -0.412 6.412 19 C -0.178 4.178 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.105 4.105 24 C -0.169 4.169 25 C 0.070 3.930 26 F -0.121 7.121 27 C -0.171 4.171 28 C -0.106 4.106 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.221 0.779 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.052 -24.255 15.748 30.302 hybrid contribution 0.901 0.723 -0.133 1.162 sum -8.151 -23.532 15.614 29.394 Atomic orbital electron populations 1.21825 0.79680 1.02944 1.02189 1.47730 1.06780 1.06138 1.73880 1.22262 0.98264 0.84700 0.98691 1.22471 0.95636 0.88256 0.91038 0.88764 1.86531 1.33100 1.58922 1.56787 1.21242 0.96783 0.92559 0.89714 1.42243 1.68176 1.25138 1.01414 1.19186 1.28302 0.97800 0.92115 0.91327 1.24764 1.01540 0.99059 0.95614 1.69675 1.50383 1.39241 0.98582 0.86252 0.79564 0.83378 0.76871 1.21267 1.21667 1.21297 1.20543 0.88076 0.85170 0.75610 1.90668 1.14011 1.87242 1.49239 1.21700 0.99489 0.92559 1.04036 1.21332 0.97290 0.90823 1.04242 1.20656 0.96110 0.91812 1.03257 1.19965 0.98630 0.97264 0.92945 1.20982 0.96046 0.95042 0.98382 1.21178 0.99835 0.98746 0.97181 1.17749 0.92246 0.88155 0.94807 1.91498 1.66685 1.56477 1.97453 1.21144 1.00041 0.98800 0.97113 1.20928 0.96300 0.95192 0.98224 0.92338 0.91135 0.90972 0.89590 0.89810 0.77855 0.96184 0.95841 0.77771 0.93470 0.89219 0.88851 0.90660 0.91030 0.90725 0.90538 0.84822 0.84725 0.84833 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.29 59.85 0.62 1.19 16 2 N -0.61 -6.92 2.83 -181.57 -0.51 -7.44 16 3 C 0.08 1.09 5.19 -4.05 -0.02 1.07 16 4 C 0.09 1.46 3.27 -26.73 -0.09 1.37 16 5 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 6 O -0.55 -10.46 12.09 -43.98 -0.53 -10.99 16 7 C 0.13 2.56 5.90 -4.04 -0.02 2.53 16 8 N -0.73 -19.10 5.55 -59.91 -0.33 -19.43 16 9 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 13 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.52 6.36 7.18 -10.99 -0.08 6.28 16 18 O -0.54 -8.56 14.35 -3.18 -0.05 -8.60 16 19 C -0.14 -1.09 4.25 -27.88 -0.12 -1.21 16 20 C -0.10 -0.83 4.49 -26.73 -0.12 -0.95 16 21 C -0.08 -0.48 5.34 -27.88 -0.15 -0.63 16 22 C -0.09 -0.65 5.13 -104.62 -0.54 -1.19 16 23 C -0.09 -0.66 9.70 -39.59 -0.38 -1.04 16 24 C -0.15 -1.24 10.03 -39.51 -0.40 -1.63 16 25 C 0.09 0.81 7.30 -39.42 -0.29 0.53 16 26 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 27 C -0.15 -1.19 10.03 -39.52 -0.40 -1.59 16 28 C -0.09 -0.63 9.70 -39.60 -0.38 -1.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 31 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 32 H 0.09 1.20 7.42 -51.93 -0.39 0.81 16 33 H 0.08 0.90 7.89 -51.92 -0.41 0.49 16 34 H 0.37 6.80 8.45 45.56 0.38 7.19 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.39 11.01 7.67 -40.82 -0.31 10.69 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.09 0.49 7.40 -51.93 -0.38 0.11 16 40 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 44 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 48 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -35.57 403.88 -9.09 -44.67 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.88 Total: 11.50 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.61 Total: -3.93 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.12 Total: -55.16 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.58 Total: -19.59 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.57 -9.09 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677116147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.519 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds